mRNA_H-elongata_contig74679.15147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74679.15147.1
Unique NamemRNA_H-elongata_contig74679.15147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74679.15147.1 vs. uniprot
Match: D8LIA4_ECTSI (Kinesin-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.210e-16
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 IRNISTWTFRSQEGMKNPDREYKERTLWESNIEPLLDLATETENQDLLVE 150
            +RNIS WTFRSQE M +P++EY+ERTLW+  +EPLLDLATETE+ +LLVE
Sbjct:  516 VRNISMWTFRSQEAMDSPEKEYRERTLWDPLVEPLLDLATETESHELLVE 565
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BLAST of mRNA_H-elongata_contig74679.15147.1 vs. uniprot
Match: A0A812QE41_SYMMI (KAP115 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QE41_SYMMI)

HSP 1 Score: 53.1 bits (126), Expect = 8.320e-7
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 IRNISTWTFRSQEGMKNPDREYKERTLWESNIEPLLDLATETENQDLLVE 150
            IRNIS W+F SQ+ ++N D +YK R LW  +I+ +  LA + ++ DLLVE
Sbjct:  189 IRNISLWSFNSQQSLENADLQYKYRGLWSPHIKNICRLAVDADSHDLLVE 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74679.15147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIA4_ECTSI9.210e-1670.00Kinesin-associated protein n=1 Tax=Ectocarpus sili... [more]
A0A812QE41_SYMMI8.320e-748.00KAP115 protein n=1 Tax=Symbiodinium microadriaticu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74679contigH-elongata_contig74679:256..405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue9.4e-13
Seed eggNOG ortholog2880.D8LIA4
Preferred nameKIFAP3
GOsGO:0000226,GO:0000228,GO:0000793,GO:0000794,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005783,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0005886,GO:0005929,GO:0005930,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007163,GO:0007165,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008088,GO:0008089,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0009987,GO:0010638,GO:0010639,GO:0010941,GO:0010970,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016939,GO:0017111,GO:0019882,GO:0019884,GO:0019886,GO:0019894,GO:0022407,GO:0022409,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030155,GO:0030705,GO:0030951,GO:0030952,GO:0030993,GO:0031344,GO:0031345,GO:0031346,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0035720,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045785,GO:0046586,GO:0046587,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060271,GO:0060491,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072383,GO:0072384,GO:0072386,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0098590,GO:0098930,GO:0099111,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902117,GO:1902855,GO:1902856,GO:1902857,GO:1905515,GO:1990075
EggNOG free text desc.positive regulation of calcium-dependent cell-cell adhesion
EggNOG OGsKOG1222@1,KOG1222@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.8856995-CDS-H-elongata_contig74679:255..4051622931150.8856995-CDS-H-elongata_contig74679:255..405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74679 256..405 -
1691679719.1754146-CDS-H-elongata_contig74679:255..4051691679719.1754146-CDS-H-elongata_contig74679:255..405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74679 256..405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74679.15147.1prot_H-elongata_contig74679.15147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74679 256..405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74679.15147.1

>prot_H-elongata_contig74679.15147.1 ID=prot_H-elongata_contig74679.15147.1|Name=mRNA_H-elongata_contig74679.15147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
IRNISTWTFRSQEGMKNPDREYKERTLWESNIEPLLDLATETENQDLLVE
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mRNA from alignment at H-elongata_contig74679:256..405-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74679.15147.1 ID=mRNA_H-elongata_contig74679.15147.1|Name=mRNA_H-elongata_contig74679.15147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig74679:256..405- (Himanthalia elongata Himel1 dioecious)
ATCCGAAACATCTCGACGTGGACGTTCCGATCTCAGGAGGGGATGAAAAA
CCCCGATCGAGAGTACAAGGAGCGAACGCTCTGGGAGTCGAACATCGAGC
CGCTACTGGACCTCGCGACGGAGACCGAAAACCAAGACCTTCTCGTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig74679:256..405-

>mRNA_H-elongata_contig74679.15147.1 ID=mRNA_H-elongata_contig74679.15147.1|Name=mRNA_H-elongata_contig74679.15147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig74679:256..405- (Himanthalia elongata Himel1 dioecious)
ATCCGAAACATCTCGACGTGGACGTTCCGATCTCAGGAGGGGATGAAAAA
CCCCGATCGAGAGTACAAGGAGCGAACGCTCTGGGAGTCGAACATCGAGC
CGCTACTGGACCTCGCGACGGAGACCGAAAACCAAGACCTTCTCGTCGAG
ATCCGAAACATCTCGACGTGGACGTTCCGATCTCAGGAGGGGATGAAAAA
CCCCGATCGAGAGTACAAGGAGCGAACGCTCTGGGAGTCGAACATCGAGC
CGCTACTGGACCTCGCGACGGAGACCGAAAACCAAGACCTTCTCGTCGAG
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