mRNA_H-elongata_contig7466.15145.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7466.15145.1
Unique NamemRNA_H-elongata_contig7466.15145.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7466.15145.1 vs. uniprot
Match: D8LET6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET6_ECTSI)

HSP 1 Score: 590 bits (1521), Expect = 1.360e-179
Identity = 473/1155 (40.95%), Postives = 610/1155 (52.81%), Query Frame = 1 
Query:    1 DDIPERSGSSSSDVMSACALTLLRILSHAANCKIRKASSVGIPSY-------QMERKDR-----STNSAFN---SECNGLNSIHSCPDTYHRCIISDAVVGVVGSCLSRVAHEIDLAAGPRGAMESVLYFLLPSAGMLVREQAALALSAIAGEGYDAMLQASRSAGELHLLSVATDGARRKSSAPEGVVV------SDGADLAKEGP------QLKLWRHFCVGMVEGTGAQIVLDSALPGPSSIPNSPLLRERATRAMAFVCLCAGATRASPTVLAGLVLLLQCRAGDAIGVSVTRALWVLARLPENRKALARIRVVASLM--------PLCEWTLEQGYRELHLYCLATL-----YVLSQ--EPENATQVLEQNSSIAKFVSWGTPAKVTSLGSLGMMR----KENAKTTSCLGIIRRCLLRPEGLKTVAEGLVSFSLLELVLRLLRIEIWEKSASPLMLREALGILFTIQDRAEYRSYLKRICGGKIFTVEDTMSLQLERPGTLYAALTNDAVIGLACVSMTLESRRRLAVNGTMESVERLLAHGM-LEWEHGRED----DHHAVQNLMKLTKNLSSVSEAHEKLSSRLLLPLIVRLWKGNANEKASRLASHVLGNLSRSKVPGVQNRLFRCHLAAEFD-------SLGERFTEAQLLNSAREQLPIAFVP-----------------CRKELDPNGSLPSSVFRHKNADSGVP-KGNINSNQGGRT------RALQREARLNAQRRLRLTPDALWGDKAHRLTYGAENSVTSSTKAPTVTVAKSLMQRRSSNRDPDAEG------------MNEEETKGVGIRETNAIMTSKMGSAVAY---GSVGVCNPASDGYKYILSVGTS-YADTASLEKPTATATVPLRWQSRVMSLSSLRDH---GGNRSHTSL---TASWKIRARPGKCGKIKSKRYMKDHPAMPVVCGWQPPRNTRENVRDEEGETRPDTLT-DVLATPCTVGGCKPRTARLNEDNN---PGSTKDRRRQSKWAVLHRGDDSILSEIQE-RASTAPTHSDGKVVVRSLG--------PGASAEWNPPSVVIKSGSSRLQIQWAVLDRLYRFTRHREGNDSRCSSAGPKHHKTNNFASCNTRFATAQPAKHSPI-SNGLLHPPGEYAGGRQSTE 3111
            D I +R   S   ++S CALTLL +LS  A     + SSVG+ S        +M R  R     ST  + N   SE  G ++ +    +     +  ++V + GSCLSRVA +IDLAAGP GAMESVL  LLPSAG+LVR+QAAL LSAIAG+G+  +        +      A   A R S               D A    +G       +L LW  FC G+VEGTGAQI+LD ALPGPSS PNS LLRERA  A + VCLCAG   AS  V  G+V LL+CR G+ +G + T ALW L R+P NRKA A+ R    L+         L   TL +    +  +C   L     Y +S   EPENA Q+     SIAK VSW TP       S  + R    ++NAKT SCLG+IRRCLL PEG+K +A+GL S+SL++LVL+LLR+ +W KS  PL LREA G+LF +QDRAEYR Y + ICGG  F VEDT++LQL+RPG  YAAL  DAV+GLA +S+TL SRRRLAVNGT+ESV+RLLA  M +E   GRE     DH AV+N+ KL KNLSSV EAH +LS+R LLPLI RLW+ + +E  S+LA HVL NLSRS VPGV+NRLF+ HLAAE +       S G   T A +     +Q P A VP                      D   SL SSVFR      G   KGN  ++            AL+R+AR +AQ RLRL P ALWG +A  +  G          A  V   ++     ++  D +A G            +N    +    R+ +     K+G A A     SVG  +    G   I+  GT+  +  ASL++P  TA VPLRWQSRV++LSSLRD    G  R   S+    A  + RAR       +SK   +        C      N     ++ +  T  D+ + D    P  +G  +   A      +   PG  K            RG + ILS ++  R STAP HSDGKV++R LG        PG S E  PPSVV + GSSRL+ +  +LDR+YRFTRH+E +    + +G     TN   +   + +   PA  + + S+G    PG+ AGG  S E
Sbjct:  785 DSITDRPSMSPRHILSKCALTLLGLLSQVAKHHAHRRSSVGVESTGNDPNCKRMSRSGRTGSTSSTKVSSNIDHSETTGKSNSNGGNSSIGG--VPHSIVAIAGSCLSRVAQDIDLAAGPPGAMESVLALLLPSAGLLVRQQAALTLSAIAGQGFQTL-------SDFRTEKAAVAAAARWSCGXXXXXXXXXXXXDDAAQWPGQGEGGRERKRLLLWGTFCAGVVEGTGAQIILDCALPGPSSRPNSRLLRERAALAFSLVCLCAGLRPASSAVQGGIVSLLRCRDGEVVGGAATAALWALCRVPVNRKAFAKTRCFDYLLLTSITRSRALVCCTLSENEGVVTSFCSKRLQKRQIYPISLLVEPENALQITNHGGSIAKLVSWATPLNGDH-NSEDLSRMITVEDNAKTASCLGVIRRCLLLPEGMKALADGLASYSLIQLVLQLLRVGVWVKSVLPLTLREAQGVLFAVQDRAEYRGYCESICGGDPFGVEDTLALQLQRPGVKYAALAGDAVVGLASLSVTLASRRRLAVNGTVESVDRLLARSMAIESGGGREKGSKGDHEAVRNMAKLLKNLSSVPEAHRRLSNRPLLPLITRLWEESPDEATSQLACHVLANLSRSDVPGVRNRLFQLHLAAESEVVRRTRASGGAGTTPAPIA----KQKPSAAVPRQGFAASSTATRAQHGETNSRDDDTVSLSSSVFRRDGFVEGHRYKGNGCTSDAKSAAVLLSQEALRRDARRDAQYRLRLMPAALWGSRARHVDDGCSGGEDGLDVAGIVEKQRTRQTFLTAGLD-EASGAVAVESATVTSTLNARHDRHQAKRDGSCPSKQKIGGAAAVVVQPSVGDFDDG--GGDGIVFQGTAKVSQAASLKRPAVTANVPLRWQSRVVALSSLRDSLNGGATRGSPSMGQRMAKARCRARQ------RSKENRQHEFTSTTACKDMNKGNNSNETQESKEVTSSDSASPDQRCRPSKIGDTRMTLAEWTSREDVHVPGGEKST---DDSGGCGRGAEGILSLVEGGRPSTAPMHSDGKVIMRPLGLGQVDNGVPGGSLE--PPSVVFEPGSSRLRTRRIILDRVYRFTRHQEQSTIMGAPSGST--DTNRGTTEFNKGSAPDPAPQAGLTSSGSPEDPGK-AGGHFSKE 1908
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7466.15145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LET6_ECTSI1.360e-17940.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7466contigH-elongata_contig7466:1026..7023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons11
Model size3192
Cds size3192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.1073513-CDS-H-elongata_contig7466:1025..13021622931150.1073513-CDS-H-elongata_contig7466:1025..1302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 1026..1302 -
1691679719.0183847-CDS-H-elongata_contig7466:1025..13021691679719.0183847-CDS-H-elongata_contig7466:1025..1302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 1026..1302 -
1622931150.6213942-CDS-H-elongata_contig7466:1524..16991622931150.6213942-CDS-H-elongata_contig7466:1524..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 1525..1699 -
1691679719.027952-CDS-H-elongata_contig7466:1524..16991691679719.027952-CDS-H-elongata_contig7466:1524..1699Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 1525..1699 -
1622931150.6370075-CDS-H-elongata_contig7466:1735..19351622931150.6370075-CDS-H-elongata_contig7466:1735..1935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 1736..1935 -
1691679719.038114-CDS-H-elongata_contig7466:1735..19351691679719.038114-CDS-H-elongata_contig7466:1735..1935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 1736..1935 -
1622931150.6528358-CDS-H-elongata_contig7466:2137..29281622931150.6528358-CDS-H-elongata_contig7466:2137..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 2138..2928 -
1691679719.0486403-CDS-H-elongata_contig7466:2137..29281691679719.0486403-CDS-H-elongata_contig7466:2137..2928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 2138..2928 -
1622931150.6676533-CDS-H-elongata_contig7466:3162..33511622931150.6676533-CDS-H-elongata_contig7466:3162..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 3163..3351 -
1691679719.069442-CDS-H-elongata_contig7466:3162..33511691679719.069442-CDS-H-elongata_contig7466:3162..3351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 3163..3351 -
1622931150.684879-CDS-H-elongata_contig7466:3762..40501622931150.684879-CDS-H-elongata_contig7466:3762..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 3763..4050 -
1691679719.079235-CDS-H-elongata_contig7466:3762..40501691679719.079235-CDS-H-elongata_contig7466:3762..4050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 3763..4050 -
1622931150.6994371-CDS-H-elongata_contig7466:4354..45051622931150.6994371-CDS-H-elongata_contig7466:4354..4505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 4355..4505 -
1691679719.0889697-CDS-H-elongata_contig7466:4354..45051691679719.0889697-CDS-H-elongata_contig7466:4354..4505Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 4355..4505 -
1622931150.7140203-CDS-H-elongata_contig7466:4821..49761622931150.7140203-CDS-H-elongata_contig7466:4821..4976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 4822..4976 -
1691679719.0992322-CDS-H-elongata_contig7466:4821..49761691679719.0992322-CDS-H-elongata_contig7466:4821..4976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 4822..4976 -
1622931150.7263024-CDS-H-elongata_contig7466:5173..52731622931150.7263024-CDS-H-elongata_contig7466:5173..5273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 5174..5273 -
1691679719.1132703-CDS-H-elongata_contig7466:5173..52731691679719.1132703-CDS-H-elongata_contig7466:5173..5273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 5174..5273 -
1622931150.7416892-CDS-H-elongata_contig7466:5805..60561622931150.7416892-CDS-H-elongata_contig7466:5805..6056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 5806..6056 -
1691679719.1262898-CDS-H-elongata_contig7466:5805..60561691679719.1262898-CDS-H-elongata_contig7466:5805..6056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 5806..6056 -
1622931150.7559848-CDS-H-elongata_contig7466:6408..70231622931150.7559848-CDS-H-elongata_contig7466:6408..7023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 6409..7023 -
1691679719.1356-CDS-H-elongata_contig7466:6408..70231691679719.1356-CDS-H-elongata_contig7466:6408..7023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7466 6409..7023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7466.15145.1prot_H-elongata_contig7466.15145.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7466 1026..7023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7466.15145.1

>prot_H-elongata_contig7466.15145.1 ID=prot_H-elongata_contig7466.15145.1|Name=mRNA_H-elongata_contig7466.15145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1064bp
DDIPERSGSSSSDVMSACALTLLRILSHAANCKIRKASSVGIPSYQMERK
DRSTNSAFNSECNGLNSIHSCPDTYHRCIISDAVVGVVGSCLSRVAHEID
LAAGPRGAMESVLYFLLPSAGMLVREQAALALSAIAGEGYDAMLQASRSA
GELHLLSVATDGARRKSSAPEGVVVSDGADLAKEGPQLKLWRHFCVGMVE
GTGAQIVLDSALPGPSSIPNSPLLRERATRAMAFVCLCAGATRASPTVLA
GLVLLLQCRAGDAIGVSVTRALWVLARLPENRKALARIRVVASLMPLCEW
TLEQGYRELHLYCLATLYVLSQEPENATQVLEQNSSIAKFVSWGTPAKVT
SLGSLGMMRKENAKTTSCLGIIRRCLLRPEGLKTVAEGLVSFSLLELVLR
LLRIEIWEKSASPLMLREALGILFTIQDRAEYRSYLKRICGGKIFTVEDT
MSLQLERPGTLYAALTNDAVIGLACVSMTLESRRRLAVNGTMESVERLLA
HGMLEWEHGREDDHHAVQNLMKLTKNLSSVSEAHEKLSSRLLLPLIVRLW
KGNANEKASRLASHVLGNLSRSKVPGVQNRLFRCHLAAEFDSLGERFTEA
QLLNSAREQLPIAFVPCRKELDPNGSLPSSVFRHKNADSGVPKGNINSNQ
GGRTRALQREARLNAQRRLRLTPDALWGDKAHRLTYGAENSVTSSTKAPT
VTVAKSLMQRRSSNRDPDAEGMNEEETKGVGIRETNAIMTSKMGSAVAYG
SVGVCNPASDGYKYILSVGTSYADTASLEKPTATATVPLRWQSRVMSLSS
LRDHGGNRSHTSLTASWKIRARPGKCGKIKSKRYMKDHPAMPVVCGWQPP
RNTRENVRDEEGETRPDTLTDVLATPCTVGGCKPRTARLNEDNNPGSTKD
RRRQSKWAVLHRGDDSILSEIQERASTAPTHSDGKVVVRSLGPGASAEWN
PPSVVIKSGSSRLQIQWAVLDRLYRFTRHREGNDSRCSSAGPKHHKTNNF
ASCNTRFATAQPAKHSPISNGLLHPPGEYAGGRQSTEGSNGGRNNQYPNK
MVPWKPPLLFQFCK
back to top

mRNA from alignment at H-elongata_contig7466:1026..7023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7466.15145.1 ID=mRNA_H-elongata_contig7466.15145.1|Name=mRNA_H-elongata_contig7466.15145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5998bp|location=Sequence derived from alignment at H-elongata_contig7466:1026..7023- (Himanthalia elongata Himel1 dioecious)
GACGATATACCGGAGAGGTCGGGATCCTCAAGCAGCGATGTCATGTCGGC
TTGCGCCCTCACGCTCCTGCGCATATTATCTCACGCTGCCAACTGCAAGA
TAAGGAAGGCAAGCTCAGTTGGAATTCCTAGCTACCAGATGGAGCGAAAG
GATAGGAGCACCAACAGTGCCTTCAACAGTGAGTGCAATGGTTTGAACAG
CATCCACAGCTGTCCCGACACCTACCACCGCTGCATCATCTCCGACGCGG
TTGTCGGCGTTGTCGGGTCATGTCTCTCCCGCGTGGCTCACGAGATTGAC
CTAGCGGCTGGTCCACGTGGAGCTATGGAGTCTGTTCTATACTTTCTTCT
ACCGTCAGCCGGAATGCTTGTGAGAGAGCAGGCGGCCCTCGCGCTGAGCG
CGATTGCGGGCGAGGGATACGACGCCATGCTGCAAGCCTCTAGGTCGGCG
GGTGAGCTGCATCTATTGTCGGTAGCTACAGACGGTGCGCGCCGCAAATC
AAGCGCACCTGAGGGGGTCGTGGTGTCAGACGGTGCTGATCTAGCGAAGG
AGGGACCGCAGTTGAAGTTATGGAGGCATTTTTGTGTCGGGATGGTGGAG
GGAACGGGTGCCCAGGTGTGGTCGTCGTTAAGTGAAAATAGAATAAGAAA
GTGACGAGTAGGATCTGTAGGTTGAAACACTCGGAGAAATATAGGAGGGC
GATCTGAATTATGCACGAGGTCGGGATAAACATGAGCCTTAAAGTATTTA
ATCACTAGCCATCCATAGTGGAACAGCAGGATGATATGCGTGAATTTCAA
GGGTCAACCTCTATTGCGACTCACGTCTCGAACGAATTCCTTGATGTCTT
ATGTGTACCCCTTGATAATGACGCTTTTCGTTTAGGCATTCACACTACCT
CGCCCGCTAATAATGTAATTTCCTTCCCCTCGTCTCTTTGATATATCTTC
TTCCTCGCGCGACGAAGATCGTGCTTGATAGCGCCCTCCCGGGACCATCT
TCAATCCCCAACAGTCCCTTGCTCCGAGAACGAGCTACCCGTGCGATGGC
TTTTGTCTGTCTCTGCGCCGGTGCCACTCGCGCATCTCCGACGGTTTTGG
CGGGGCTCGTATTGTTACTGCAGTGCCGTGCTGGGGATGCTATCGGGGTG
TCGGTGACGAGGGCATTGTGGGTGCTTGCTCGGTTGCCAGAGAACAGGAA
GGCACTCGCAAGAATAAGGTGGGGAGGTTGGACTTCAGGAAATGTCGGTA
AGAATAAATTACCGATGGGAAGGTGATGGAGAAGCGAGCGGGTTAGATAC
GCCATTTTTTACCAATTTTCCGGCCCTAACCGTAGGGAGGACAACAAATT
ACTTTACCGTTCACTTGTCTCATCAACTACGCAGATATAAATGCCAAACG
TCACACACTTCAAAAATATATTAGCCCAATTTTTCCAACAACGTAGCTTG
AGACACAAGTGCCGCATGTGACAATGAGAAGGTTGGGCGATGAAGTTTAC
ATCCCTGAGGGGTGGTTTAACAATAGAACGACTCACCTATAATATTAGAA
CACGAGGCGGCTTCTTCACAAAGGGTCGGTACGCAAGTGTGCAAAACAGA
TTAAAAGTTTAAAATAGTATTGAATGGATCATCGGCCCTCTCCACCCGCC
CAAAACTTGCGAAAGGACACTGTTTAGTTTGCGACCCTTAAATATCGCAT
GCTCCCATCATGGCCACGGGACGTGTGGCGGTCAATAATGGTGGCGCTAG
GGTGGTGGCCTCTCTCATGCCGTTGTGCGAGTGGACCCTCGAGCAAGGCT
ACCGTGAGCTTCACCTGTACTGCTTGGCCACCCTATATGTTCTGTCTCAG
GTTTGCCACGGAATGCGCCGTGGTAGACGAAATAAGCTCTCTTTCTACTA
CTGCATATGTGCGACTCGAACCACATTCCAGGTGGCATACACGTTCAAGA
ATAGAGGACATGCAAACGGTTGTCCTCTCCACTTTGCCTGAGCTATAGCG
GAGTAGGCTAAAATCACCCCTTTCGCTGTCCGCGCGTGCTCCTCTAGGAG
CCTGAAAATGCCACCCAAGTTTTGGAACAAAATAGCAGCATTGCGAAGTT
TGTGTCGTGGGGAACTCCTGCCAAGGTTACCAGCCTTGGTTCGTTGGGCA
TGATGCGAAAGGAAAACGCTAAAACCACGAGCTGTCTTGGTATCATTCGC
AGGTAAGTATTTAGTCTCGGTGTCCAATCGTTCAAGGGGGTGGTTTTCTG
ATAAGACTCGCCGGTATTAATAAATCTGGAAAGCTTGAGCGTCAGTGATA
CCGTTCTTGCTTCTTCTATTGCTCTCAGAGCGCTCCGTTCCAACACTTAC
ATGTCTGAAACATTTTATATGCGTGTCTTTCTCCCCTTCCTTTTGTCGCG
ACCTCTTTTCCTCGTGGAATGACTGCTTCAACGACAATGCTCTGGCCGTT
AGCGTTGCCAAACACTTCCTATGCAGGGCTTTGGCGTGATCAACAGATCT
TTCTTCTGGCTGCTGCAGGTGTCTCCTCCGCCCGGAAGGTCTAAAGACTG
TAGCGGAGGGCCTTGTCAGCTTTTCGTTGTTAGAATTGGTGCTTCGACTA
CTCCGGATCGAAATCTGGGAGAAGTCTGCATCGCCGCTGATGCTCAGAGA
GGCGCTGGGAATTCTATTTGTCTTGCAGGTATACATCGACCGTTGGTCCT
GAGCATTGTCCAAGCATCATAATATGTGTAGGGATCTTGACGCGCACAAA
ACTTTCGATTACATGGGCTTTGACGTGAGCTCTGGGTTTCATTTCTACGT
CGACAGAGCATGAGGCCGGTCCAGGTTAATTATAAGGATCGTTTCAACAT
ACTCATAAATATTACCCCTTTTCAGTGTTTGACTACACCTTGTAACGGTC
GGACATAAATTCCATCACCGCACATATCAATCAAAGCTTTCACTCTAACG
TCACGATAACCGCTGATGGCGAGACCATTCAGGACCGTGCAGAGTACCGC
AGCTACTTAAAGCGCATCTGCGGTGGGAAAATTTTCACCGTCGAGGACAC
GATGTCCCTGCAGCTTGAGCGTCCCGGAACGTTGTACGCCGCGTTGACGA
ATGATGCCGTAATCGGACTGGCTTGTGTGTCGATGACCCTCGAGTCGAGA
CGGCGACTAGCTGTGAACGGTACGATGGAGAGCGTCGAAAGACTGCTTGC
GCACGGCATGTTGGAGTGGGAGCATGGAAGGGAGGACGATCACCACGCCG
TCCAAAACCTGGTGGGATAATCTCACCAGCTTCGAGGGGAATTGGTTCAC
ACGTTACCTATGTGATGGCTACGATCGGCGATGTGTGAAATCATGTTTCT
TTGTAGTTTAAAGGAGGTCCACCGGCGGAAACATGATACTATGTTGATAC
ACACAAGGAGCGCAAGGAAGCCACAGTAAAAACTGTAGCAAGAGAGAGAG
CTTGGGTCGAAGACAGAGATTTTGAGGTGGCAAACACGTCAAACTACCAA
CACCACCCCTTGCCCGTGCCACAAGACTTACCCCTACGGCGTGAAGTATT
GTCACACATGAGCACAAGCGCGTAAATTGACTTTGCTGCCACTTATAGCG
TGAACTATTCTCCTTATAATCTTCTGTCATGACGACGTAATATCACCTTG
TTTCACCTAAACCAAAATATAGATGAAACTCACAAAAAATCTGTCGAGCG
TATCGGAGGCGCACGAAAAGCTGTCAAGCCGCTTGCTACTACCCCTCATC
GTACGCCTTTGGAAGGGAAACGCCAACGAAAAGGCGTCAAGACTCGCCAG
TCACGTTCTGGGGAATCTTAGCCGTAGCAAGGTACCTGGGGTCCAAAACC
GTCTCTTTCGGGTAAGTGGGGGAAAATTGTGCTTACCTGAGGATCGAGGG
AGTCGGGGTTGGTTTCGGTAGGACCCTCTTTGGGGACATCGTACTCTCAT
TCGGCCTTGACCAGAAAGTGTGGTTACGAACTCACTTTCGACTATGATTA
CGTCAAACCCTGACAAAGGCAAAGCACGTTTCTTGACCTCTACCCACTAG
CGTTGTCTCCTTCTCCTTTCTCGCTCTTCGGACTGCTCCAAAAAGTGCCA
CCTTGCAGCAGAGTTCGACAGTCTCGGCGAACGTTTCACTGAGGCACAAT
TGCTCAATTCTGCGCGTGAACAGCTTCCGATTGCTTTCGTGCCCTGCCGC
AAAGAGCTTGACCCCAACGGGAGCCTGCCGTCCAGCGTCTTTCGGCATAA
GAACGCGGACAGCGGGGTGCCGAAAGGAAATATCAACAGTAATCAAGGTG
GAAGGACGAGAGCTTTGCAAAGGGAAGCTCGTCTCAACGCCCAGCGCCGC
CTTCGATTGACGCCTGACGCACTATGGGGAGACAAGGCACACCGACTCAC
ATACGGAGCAGAAAACTCGGTGACGTCTTCAACAAAAGCACCCACAGTCA
CCGTTGCGAAATCATTGATGCAACGCCGAAGCTCCAATCGGGATCCGGAT
GCCGAGGGAATGAACGAAGAAGAAACAAAAGGGGTCGGTATTCGAGAGAC
TAACGCGATTATGACGAGCAAGATGGGCTCCGCTGTGGCTTATGGAAGTG
TAGGAGTTTGCAATCCCGCCAGCGATGGCTATAAATATATCCTTTCAGTG
GGAACCAGTTATGCCGACACGGCGTCACTGGAGAAGCCAACCGCCACAGC
GACCGTACCATTGAGGTGGCAGTCAAGAGTCATGTCGCTGTCGAGTCTGC
GAGATCACGGGGGGAATCGAAGCCACACCTCGTTGACTGCGAGCTGGAAG
ATCAGGGCACGACCTGGAAAATGCGGAAAAATAAAATCTAAGAGGTACAT
GAAGGATCACCCAGCAATGCCTGTCGTCTGCGGATGGTTGACACGTTTCC
ACTATGATCGGCACATGTTTGATCATTATCACCACGGCAGTCGAATCCCT
TAGAGGATTACATATTTATGGGTGAAAATGGCCGCAGTCAACTGACTGAA
TGTGCTACAGTTTTCGCCCGAAAAGGCGTTTACCTTGTCCTGCGTTGTGA
GTATTTTTGTCGCGCTCCAACATGACTCTCATTCCCAGGCAGCCGCCACG
CAACACGCGTGAGAACGTTAGAGACGAAGAAGGTGAGACTCGACCAGATA
CTCTGACAGATGTCCTGGCGACTCCTTGTACCGTCGGAGGATGTAAACCC
CGTACAGCTAGACTGAACGAGGACAATAATCCAGGAAGCACCAAAGATAG
AAGACGCCAATCTAAGTGGGCGGTACTGCACCGCGGAGGTAGCTATGGTT
GGGAACAACCACTCTGCGAGAAAGACGACAGCATCCTTTCGGAGATTCAG
GAAAGAGCTTCTACGGCGCCAACGCACTCGGATGGGAAGGTGGTCGTAAG
ATCGCTGGGGCCAGGCGCCAGCGCTGAGTGGAATCCTCCGTCTGTCGTGA
TCAAGTCAGGGTCCTCACGACTCCAGATACAGTGGGCAGTTCTGGACAGG
TTAGTACCGATGGTGTGGAGGTTTCGTACTACGTTACTCTCACCTTCATC
GGACCTTTGCTTGAGCGATATAATCGACCCTGAAGTTCACACATTATTCT
TGGGCCAACTACCCGGCGCACCTCGATTTCGTTCTGGAAATATTTAGGCT
AGCATCGAGATATACACCGCTAGCACATATCTCAACGCGCAAAGATTCCT
ATTTGATCGCACATTCGATAGGCTTTATCGCTTTACGAGGCATCGAGAGG
GCAACGACAGCAGATGTAGCAGCGCTGGCCCCAAACATCACAAGACAAAT
AATTTCGCTAGCTGTAATACACGCTTTGCGACAGCGCAACCCGCCAAGCA
TTCGCCGATAAGCAATGGCCTCCTTCACCCACCGGGTGAATACGCCGGAG
GGCGGCAAAGTACCGAGGGTTCCAACGGCGGGCGCAACAATCAGTACCCT
AACAAGATGGTACCTTGGAAGCCACCACTACTCTTCCAGTTCTGCAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7466:1026..7023-

>mRNA_H-elongata_contig7466.15145.1 ID=mRNA_H-elongata_contig7466.15145.1|Name=mRNA_H-elongata_contig7466.15145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6384bp|location=Sequence derived from alignment at H-elongata_contig7466:1026..7023- (Himanthalia elongata Himel1 dioecious)
GACGATATACCGGAGAGGTCGGGATCCTCAAGCAGCGATGTCATGTCGGC
TTGCGCCCTCACGCTCCTGCGCATATTATCTCACGCTGCCAACTGCAAGA
TAAGGAAGGCAAGCTCAGTTGGAATTCCTAGCTACCAGATGGAGCGAAAG
GATAGGAGCACCAACAGTGCCTTCAACAGTGAGTGCAATGGTTTGAACAG
CATCCACAGCTGTCCCGACACCTACCACCGCTGCATCATCTCCGACGCGG
TTGTCGGCGTTGTCGGGTCATGTCTCTCCCGCGTGGCTCACGAGATTGAC
CTAGCGGCTGGTCCACGTGGAGCTATGGAGTCTGTTCTATACTTTCTTCT
ACCGTCAGCCGGAATGCTTGTGAGAGAGCAGGCGGCCCTCGCGCTGAGCG
CGATTGCGGGCGAGGGATACGACGCCATGCTGCAAGCCTCTAGGTCGGCG
GGTGAGCTGCATCTATTGTCGGTAGCTACAGACGGTGCGCGCCGCAAATC
AAGCGCACCTGAGGGGGTCGTGGTGTCAGACGGTGCTGATCTAGCGAAGG
AGGGACCGCAGTTGAAGTTATGGAGGCATTTTTGTGTCGGGATGGTGGAG
GGAACGGGTGCCCAGGACGATATACCGGAGAGGTCGGGATCCTCAAGCAG
CGATGTCATGTCGGCTTGCGCCCTCACGCTCCTGCGCATATTATCTCACG
CTGCCAACTGCAAGATAAGGAAGGCAAGCTCAGTTGGAATTCCTAGCTAC
CAGATGGAGCGAAAGGATAGGAGCACCAACAGTGCCTTCAACAGTGAGTG
CAATGGTTTGAACAGCATCCACAGCTGTCCCGACACCTACCACCGCTGCA
TCATCTCCGACGCGGTTGTCGGCGTTGTCGGGTCATGTCTCTCCCGCGTG
GCTCACGAGATTGACCTAGCGGCTGGTCCACGTGGAGCTATGGAGTCTGT
TCTATACTTTCTTCTACCGTCAGCCGGAATGCTTGTGAGAGAGCAGGCGG
CCCTCGCGCTGAGCGCGATTGCGGGCGAGGGATACGACGCCATGCTGCAA
GCCTCTAGGTCGGCGGGTGAGCTGCATCTATTGTCGGTAGCTACAGACGG
TGCGCGCCGCAAATCAAGCGCACCTGAGGGGGTCGTGGTGTCAGACGGTG
CTGATCTAGCGAAGGAGGGACCGCAGTTGAAGTTATGGAGGCATTTTTGT
GTCGGGATGGTGGAGGGAACGGGTGCCCAGATCGTGCTTGATAGCGCCCT
CCCGGGACCATCTTCAATCCCCAACAGTCCCTTGCTCCGAGAACGAGCTA
CCCGTGCGATGGCTTTTGTCTGTCTCTGCGCCGGTGCCACTCGCGCATCT
CCGACGGTTTTGGCGGGGCTCGTATTGTTACTGCAGTGCCGTGCTGGGGA
TGCTATCGGGGTGTCGGTGACGAGGGCATTGTGGGTGCTTGCTCGGTTGC
CAGAGAACAGGAAGGCACTCGCAAGAATAAGATCGTGCTTGATAGCGCCC
TCCCGGGACCATCTTCAATCCCCAACAGTCCCTTGCTCCGAGAACGAGCT
ACCCGTGCGATGGCTTTTGTCTGTCTCTGCGCCGGTGCCACTCGCGCATC
TCCGACGGTTTTGGCGGGGCTCGTATTGTTACTGCAGTGCCGTGCTGGGG
ATGCTATCGGGGTGTCGGTGACGAGGGCATTGTGGGTGCTTGCTCGGTTG
CCAGAGAACAGGAAGGCACTCGCAAGAATAAGGGTGGTGGCCTCTCTCAT
GCCGTTGTGCGAGTGGACCCTCGAGCAAGGCTACCGTGAGCTTCACCTGT
ACTGCTTGGCCACCCTATATGTTCTGTCTCAGGGTGGTGGCCTCTCTCAT
GCCGTTGTGCGAGTGGACCCTCGAGCAAGGCTACCGTGAGCTTCACCTGT
ACTGCTTGGCCACCCTATATGTTCTGTCTCAGGAGCCTGAAAATGCCACC
CAAGTTTTGGAACAAAATAGCAGCATTGCGAAGTTTGTGTCGTGGGGAAC
TCCTGCCAAGGTTACCAGCCTTGGTTCGTTGGGCATGATGCGAAAGGAAA
ACGCTAAAACCACGAGCTGTCTTGGTATCATTCGCAGGAGCCTGAAAATG
CCACCCAAGTTTTGGAACAAAATAGCAGCATTGCGAAGTTTGTGTCGTGG
GGAACTCCTGCCAAGGTTACCAGCCTTGGTTCGTTGGGCATGATGCGAAA
GGAAAACGCTAAAACCACGAGCTGTCTTGGTATCATTCGCAGGTGTCTCC
TCCGCCCGGAAGGTCTAAAGACTGTAGCGGAGGGCCTTGTCAGCTTTTCG
TTGTTAGAATTGGTGCTTCGACTACTCCGGATCGAAATCTGGGAGAAGTC
TGCATCGCCGCTGATGCTCAGAGAGGCGCTGGGAATTCTATTTGTGTCTC
CTCCGCCCGGAAGGTCTAAAGACTGTAGCGGAGGGCCTTGTCAGCTTTTC
GTTGTTAGAATTGGTGCTTCGACTACTCCGGATCGAAATCTGGGAGAAGT
CTGCATCGCCGCTGATGCTCAGAGAGGCGCTGGGAATTCTATTTACCATT
CAGGACCGTGCAGAGTACCGCAGCTACTTAAAGCGCATCTGCGGTGGGAA
AATTTTCACCGTCGAGGACACGATGTCCCTGCAGCTTGAGCGTCCCGGAA
CGTTGTACGCCGCGTTGACGAATGATGCCGTAATCGGACTGGCTTGTGTG
TCGATGACCCTCGAGTCGAGACGGCGACTAGCTGTGAACGGTACGATGGA
GAGCGTCGAAAGACTGCTTGCGCACGGCATGTTGGAGTGGGAGCATGGAA
GGGAGGACGATCACCACGCCGTCCAAAACCTGACCATTCAGGACCGTGCA
GAGTACCGCAGCTACTTAAAGCGCATCTGCGGTGGGAAAATTTTCACCGT
CGAGGACACGATGTCCCTGCAGCTTGAGCGTCCCGGAACGTTGTACGCCG
CGTTGACGAATGATGCCGTAATCGGACTGGCTTGTGTGTCGATGACCCTC
GAGTCGAGACGGCGACTAGCTGTGAACGGTACGATGGAGAGCGTCGAAAG
ACTGCTTGCGCACGGCATGTTGGAGTGGGAGCATGGAAGGGAGGACGATC
ACCACGCCGTCCAAAACCTGATGAAACTCACAAAAAATCTGTCGAGCGTA
TCGGAGGCGCACGAAAAGCTGTCAAGCCGCTTGCTACTACCCCTCATCGT
ACGCCTTTGGAAGGGAAACGCCAACGAAAAGGCGTCAAGACTCGCCAGTC
ACGTTCTGGGGAATCTTAGCCGTAGCAAGGTACCTGGGGTCCAAAACCGT
CTCTTTCGGATGAAACTCACAAAAAATCTGTCGAGCGTATCGGAGGCGCA
CGAAAAGCTGTCAAGCCGCTTGCTACTACCCCTCATCGTACGCCTTTGGA
AGGGAAACGCCAACGAAAAGGCGTCAAGACTCGCCAGTCACGTTCTGGGG
AATCTTAGCCGTAGCAAGGTACCTGGGGTCCAAAACCGTCTCTTTCGGTG
CCACCTTGCAGCAGAGTTCGACAGTCTCGGCGAACGTTTCACTGAGGCAC
AATTGCTCAATTCTGCGCGTGAACAGCTTCCGATTGCTTTCGTGCCCTGC
CGCAAAGAGCTTGACCCCAACGGGAGCCTGCCGTCCAGCGTCTTTCGGCA
TAAGAACGCGGACAGCGGGGTGCCGAAAGGAAATATCAACAGTAATCAAG
GTGGAAGGACGAGAGCTTTGCAAAGGGAAGCTCGTCTCAACGCCCAGCGC
CGCCTTCGATTGACGCCTGACGCACTATGGGGAGACAAGGCACACCGACT
CACATACGGAGCAGAAAACTCGGTGACGTCTTCAACAAAAGCACCCACAG
TCACCGTTGCGAAATCATTGATGCAACGCCGAAGCTCCAATCGGGATCCG
GATGCCGAGGGAATGAACGAAGAAGAAACAAAAGGGGTCGGTATTCGAGA
GACTAACGCGATTATGACGAGCAAGATGGGCTCCGCTGTGGCTTATGGAA
GTGTAGGAGTTTGCAATCCCGCCAGCGATGGCTATAAATATATCCTTTCA
GTGGGAACCAGTTATGCCGACACGGCGTCACTGGAGAAGCCAACCGCCAC
AGCGACCGTACCATTGAGGTGGCAGTCAAGAGTCATGTCGCTGTCGAGTC
TGCGAGATCACGGGGGGAATCGAAGCCACACCTCGTTGACTGCGAGCTGG
AAGATCAGGGCACGACCTGGAAAATGCGGAAAAATAAAATCTAAGAGGTA
CATGAAGGATCACCCAGCAATGCCTGTCGTCTGCGGATGTGCCACCTTGC
AGCAGAGTTCGACAGTCTCGGCGAACGTTTCACTGAGGCACAATTGCTCA
ATTCTGCGCGTGAACAGCTTCCGATTGCTTTCGTGCCCTGCCGCAAAGAG
CTTGACCCCAACGGGAGCCTGCCGTCCAGCGTCTTTCGGCATAAGAACGC
GGACAGCGGGGTGCCGAAAGGAAATATCAACAGTAATCAAGGTGGAAGGA
CGAGAGCTTTGCAAAGGGAAGCTCGTCTCAACGCCCAGCGCCGCCTTCGA
TTGACGCCTGACGCACTATGGGGAGACAAGGCACACCGACTCACATACGG
AGCAGAAAACTCGGTGACGTCTTCAACAAAAGCACCCACAGTCACCGTTG
CGAAATCATTGATGCAACGCCGAAGCTCCAATCGGGATCCGGATGCCGAG
GGAATGAACGAAGAAGAAACAAAAGGGGTCGGTATTCGAGAGACTAACGC
GATTATGACGAGCAAGATGGGCTCCGCTGTGGCTTATGGAAGTGTAGGAG
TTTGCAATCCCGCCAGCGATGGCTATAAATATATCCTTTCAGTGGGAACC
AGTTATGCCGACACGGCGTCACTGGAGAAGCCAACCGCCACAGCGACCGT
ACCATTGAGGTGGCAGTCAAGAGTCATGTCGCTGTCGAGTCTGCGAGATC
ACGGGGGGAATCGAAGCCACACCTCGTTGACTGCGAGCTGGAAGATCAGG
GCACGACCTGGAAAATGCGGAAAAATAAAATCTAAGAGGTACATGAAGGA
TCACCCAGCAATGCCTGTCGTCTGCGGATGGCAGCCGCCACGCAACACGC
GTGAGAACGTTAGAGACGAAGAAGGTGAGACTCGACCAGATACTCTGACA
GATGTCCTGGCGACTCCTTGTACCGTCGGAGGATGTAAACCCCGTACAGC
TAGACTGAACGAGGACAATAATCCAGGAAGCACCAAAGATAGAAGACGCC
AATCTAAGTGGGCGGTACTGCACCGCGGAGGCAGCCGCCACGCAACACGC
GTGAGAACGTTAGAGACGAAGAAGGTGAGACTCGACCAGATACTCTGACA
GATGTCCTGGCGACTCCTTGTACCGTCGGAGGATGTAAACCCCGTACAGC
TAGACTGAACGAGGACAATAATCCAGGAAGCACCAAAGATAGAAGACGCC
AATCTAAGTGGGCGGTACTGCACCGCGGAGACGACAGCATCCTTTCGGAG
ATTCAGGAAAGAGCTTCTACGGCGCCAACGCACTCGGATGGGAAGGTGGT
CGTAAGATCGCTGGGGCCAGGCGCCAGCGCTGAGTGGAATCCTCCGTCTG
TCGTGATCAAGTCAGGGTCCTCACGACTCCAGATACAGTGGGCAGTTCTG
GACAGACGACAGCATCCTTTCGGAGATTCAGGAAAGAGCTTCTACGGCGC
CAACGCACTCGGATGGGAAGGTGGTCGTAAGATCGCTGGGGCCAGGCGCC
AGCGCTGAGTGGAATCCTCCGTCTGTCGTGATCAAGTCAGGGTCCTCACG
ACTCCAGATACAGTGGGCAGTTCTGGACAGGCTTTATCGCTTTACGAGGC
ATCGAGAGGGCAACGACAGCAGATGTAGCAGCGCTGGCCCCAAACATCAC
AAGACAAATAATTTCGCTAGCTGTAATACACGCTTTGCGACAGCGCAACC
CGCCAAGCATTCGCCGATAAGCAATGGCCTCCTTCACCCACCGGGTGAAT
ACGCCGGAGGGCGGCAAAGTACCGAGGGTTCCAACGGCGGGCGCAACAAT
CAGTACCCTAACAAGATGGTACCTTGGAAGCCACCACTACTCTTCCAGTT
CTGCAAGGCTTTATCGCTTTACGAGGCATCGAGAGGGCAACGACAGCAGA
TGTAGCAGCGCTGGCCCCAAACATCACAAGACAAATAATTTCGCTAGCTG
TAATACACGCTTTGCGACAGCGCAACCCGCCAAGCATTCGCCGATAAGCA
ATGGCCTCCTTCACCCACCGGGTGAATACGCCGGAGGGCGGCAAAGTACC
GAGGGTTCCAACGGCGGGCGCAACAATCAGTACCCTAACAAGATGGTACC
TTGGAAGCCACCACTACTCTTCCAGTTCTGCAAG
back to top