mRNA_H-elongata_contig74622.15143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74622.15143.1
Unique NamemRNA_H-elongata_contig74622.15143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74622.15143.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 6.920e-57
Identity = 184/440 (41.82%), Postives = 214/440 (48.64%), Query Frame = 1 
Query:  274 QSAALNAVVADASTHVIRGTTVSVQWSRGAKD---GGDRPRRRNSSNSGSVSGNGGSPR--SGRSSSKSGMFLPKGHRGGG-------------GSCGSGCSRGFSPLRSRSQGH-LHQAGSGGAGIPYSYCGGGHGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAM---GPCTSRGSPPRDVHFPTLAHSTSAGSAHGXXXXXYPSHTRSHSYSIPPTSHGHNSGGAGGGYS--------HHASQGADQHLAVGPQHHIALKTS--------------------------------HSYNVPPPMHMSPVYRERRERSESRGYQVPLNSGSSSATGGAIVGGHPLTEYERSKYDMSVPSTSYPPPGWSGDGAGIRGMGHET----------IRSQSPPTAVRSAHGTRNGGGAPRPVQTQSRGYDKQYPPSRYSPASG 1377
            ++AALNAVVADASTHVIRGTTVSVQWSRGAKD   GGDRPRR               P   SGRS ++ GMF    H+GGG             G+CG GCS GFSP+RSR  GH +H   +GG G+PY + GG HG +H NQPMVCVVVPAQRAAALG +  P H     G CTSRG+ P D HF +LA S +A     XX   Y SHTRS+S    P SHG                   H          A G  HH+ +  S                                 SY  PP MHM P+ RER+ R+E R Y      G+S ++G +   G    EYERS    S   + +  P W  D AG  G G              RSQSPP  VRS    R GGGAPRP     R YD  Y  +RY+   G
Sbjct:  295 EAAALNAVVADASTHVIRGTTVSVQWSRGAKDAGSGGDRPRRXXXXXXXXXXXXXXXPSNGSGRSCARPGMFP---HKGGGXXXXXXXXXXXXAGACGVGCSHGFSPMRSRGAGHSMHGPSAGGGGVPYGFGGGRHG-EHHNQPMVCVVVPAQRAAALGFAPHPPHGFHSTGKCTSRGTAPCDGHFSSLAQSNAASXXXXXXHPGYASHTRSNSQ---PMSHGXXXXXXXXXXXXXXXXXXXHXXFXXXXXGAASGTPHHLLVNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGAPPAMHMPPMPRERQGRAEPRDYPA----GASGSSGSSPSFG----EYERSSQSESHLHSPHALPEWGYDDAGGSGAGRAVGGSMATALGVTRSQSPPPMVRS----RIGGGAPRPPSASPRAYDGHYSSTRYNGRGG 715
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BLAST of mRNA_H-elongata_contig74622.15143.1 vs. uniprot
Match: D7FM18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM18_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 2.440e-45
Identity = 145/354 (40.96%), Postives = 170/354 (48.02%), Query Frame = 1 
Query:  502 GSCGSGCSRGFSPLRSRSQGH-LHQAGSGGAGIPYSYCGGGHGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAM---GPCTSRGSPPRDVHFPTLAHSTSAGSAHGXXXXX----YPSHTRSHSYSIPPTSHG------------HNSGGAGGGYSHHA---SQGADQHLAVGPQHHIALKT------------------------SHSYNVPPPMHMSPVYRERRERSESRGYQVPLNSGSSSATGGAIVGGHPLTEYERSKYDMSVPSTSYPPPGWSGDGAGIRGMG----------HETIRSQSPPTAVRSAHGTRNGGGAPRPVQTQSRGYDKQYPPSRYSPASGPVDSF 1392
            G+CG GCS GFSP+RSR  GH +H   +GG G+PY Y GG HG +H NQPMVCVVVPAQRAAALGL+  P H +   G CTSRG+ P D HF +LA S+       XXXXX    Y SHTRSHS    P SHG            H+ G   G + H     + G   HL+V P                                  SY  PP MHM P+ RER+ R+E R Y  P  +                 EYERS    S   ++Y  P W  D AG  G G          H  +RSQSPP  VRS    RNGGGAPRP     R YD  Y  +RY+   G V+ F
Sbjct:   23 GACGVGCSNGFSPMRSRGAGHSIHGPSAGGGGVPYGYGGGRHG-EHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSTGKCTSRGTAPCDGHFSSLAQSSXXXXXXXXXXXXXHPGYASHTRSHSQ---PISHGXXXXXXXXXXYGHHGGSPHGNFDHXXXXXAAGTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSYGGPPAMHMPPMPRERQGRAEPRDY--PSGASGXXXXXXXXXXSPSFGEYERSSQSESHLHSAYALPEWGYDDAGGSGAGRAGGGAMATAHGVVRSQSPPPMVRS----RNGGGAPRPPSASPRAYDGHYSSTRYNGRGG-VEGF 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74622.15143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCH7_9PHAE6.920e-5741.82RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM18_ECTSI2.440e-4540.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74622contigH-elongata_contig74622:1035..2929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1539
Cds size1071
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74622.15143.1prot_H-elongata_contig74622.15143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74622 1503..2929 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.984052-UTR-H-elongata_contig74622:1034..15021622931149.984052-UTR-H-elongata_contig74622:1034..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74622 1035..1502 +
1691679718.9427483-UTR-H-elongata_contig74622:1034..15021691679718.9427483-UTR-H-elongata_contig74622:1034..1502Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74622 1035..1502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.9993296-CDS-H-elongata_contig74622:1502..16851622931149.9993296-CDS-H-elongata_contig74622:1502..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74622 1503..1685 +
1691679718.954014-CDS-H-elongata_contig74622:1502..16851691679718.954014-CDS-H-elongata_contig74622:1502..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74622 1503..1685 +
1622931150.0102181-CDS-H-elongata_contig74622:2041..29291622931150.0102181-CDS-H-elongata_contig74622:2041..2929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74622 2042..2929 +
1691679718.9648829-CDS-H-elongata_contig74622:2041..29291691679718.9648829-CDS-H-elongata_contig74622:2041..2929Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74622 2042..2929 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74622.15143.1

>prot_H-elongata_contig74622.15143.1 ID=prot_H-elongata_contig74622.15143.1|Name=mRNA_H-elongata_contig74622.15143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=357bp
MFLPKGHRGGGGSCGSGCSRGFSPLRSRSQGHLHQAGSGGAGIPYSYCGG
GHGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAMGPCTSRGSPPRDVHFP
TLAHSTSAGSAHGHGHGRYPSHTRSHSYSIPPTSHGHNSGGAGGGYSHHA
SQGADQHLAVGPQHHIALKTSHSYNVPPPMHMSPVYRERRERSESRGYQV
PLNSGSSSATGGAIVGGHPLTEYERSKYDMSVPSTSYPPPGWSGDGAGIR
GMGHETIRSQSPPTAVRSAHGTRNGGGAPRPVQTQSRGYDKQYPPSRYSP
ASGPVDSFPPGIPLTGRRHSGSSLLAGRDSMRQDALAASNYFYSLGDHGN
EHAYDHD
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mRNA from alignment at H-elongata_contig74622:1035..2929+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74622.15143.1 ID=mRNA_H-elongata_contig74622.15143.1|Name=mRNA_H-elongata_contig74622.15143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1895bp|location=Sequence derived from alignment at H-elongata_contig74622:1035..2929+ (Himanthalia elongata Himel1 dioecious)
CCACCGCCTGACGACCACCGTCCACATCCACCTCCTCCTCCTCCTCCCCC
TCCCACCCAGCTTGCGCGAGGACCACCATCTGAAAAAATATGAAATGTCT
TGAGTGTGGATGCTTTGAAACTCCTATAGCAGCAAACCTGCTCTTAAGCC
TCTTCTCTGCTTGTCGCACACCTAAACAACCATTAATTTATGTAAAGAAG
TATCTGCTATTAACAGTCGTCCGTTGTTCGACTTCTCGCCTCGTTTTCTC
TCGGAACCTGTTCATTGGCCCTCCAGTCCGCAGCTCTTAACGCCGTTGTC
GCAGATGCGTCGACGCACGTCATTCGAGGTACAACGGTAAGCGTCCAGTG
GTCTAGGGGCGCTAAAGATGGCGGAGACCGGCCACGACGCCGAAACTCAT
CGAACTCTGGCTCGGTTTCTGGTAATGGAGGTTCTCCTCGCAGCGGAAGG
TCTTCGTCAAAAAGTGGAATGTTTCTGCCGAAGGGCCATCGTGGCGGAGG
CGGTTCCTGCGGGTCGGGTTGCAGTCGTGGATTCAGTCCTCTTCGGAGCC
GAAGCCAAGGCCATCTACACCAGGCCGGATCCGGGGGAGCGGGAATTCCT
TACTCGTACTGCGGAGGTGGTCACGGCGGGGATCACCTTAACCAACCTAT
GGTAAGGGCGGTCTACCTCAGATTTATTTTTACCTGGACGATAGATGGGT
ACTGTAGCGGCGTTAAGGATGGTTACAGGTATGTTGATGGCGCGCAATTG
ATCCGTTGGATGAAAACACACACACACACACACACACACAATAGGCACAT
GGGCACGCACACACTTTCCGTTACGTATCGTATAGTAAAGATCCCCGTTT
CGAGCGTCAAGTTTTTTTATTCGAGACTTCGTTGGGTCTTCGTTTTTTCG
CCATTGTACTTTCAAGGTTTATGTTAAGCATAATAAAAAATTCTTTCGCG
TGTCTTGCTCAAGCCACCCCACTCATCCCACCACTTTTACGCACCGTCGC
GGCGCAGGTATGCGTCGTCGTTCCTGCGCAGCGCGCGGCCGCACTCGGGT
TGTCGCACCTTCCTCAGCATGCGATGGGCCCGTGCACATCGAGGGGCAGC
CCCCCTCGGGACGTCCACTTCCCAACTCTAGCTCACTCCACCTCCGCCGG
TAGTGCGCATGGCCACGGGCATGGACGTTACCCTTCGCATACCCGCTCCC
ACTCGTACTCGATACCCCCTACCAGCCACGGTCATAACAGCGGCGGTGCC
GGAGGAGGCTACTCCCACCACGCGTCGCAAGGCGCCGACCAACATCTCGC
GGTTGGCCCGCAGCACCACATCGCCTTGAAGACGAGCCACTCATACAACG
TGCCTCCTCCGATGCACATGTCGCCGGTGTACCGCGAGCGAAGGGAACGC
TCCGAGTCAAGGGGGTACCAAGTGCCGTTAAACAGCGGCAGTAGTAGTGC
TACCGGAGGGGCTATCGTTGGGGGCCATCCTCTCACCGAGTACGAGCGAT
CGAAGTATGATATGTCCGTCCCTTCCACGTCTTACCCGCCTCCGGGCTGG
AGCGGTGACGGCGCGGGTATCCGAGGAATGGGCCACGAGACTATAAGGTC
GCAGTCGCCGCCCACAGCGGTGCGCTCTGCGCACGGCACTAGAAACGGAG
GTGGGGCGCCTCGTCCGGTGCAAACTCAGTCCCGAGGATATGACAAGCAG
TACCCGCCGTCTAGGTATAGCCCAGCGAGCGGCCCCGTGGACAGTTTTCC
TCCGGGAATACCGTTAACCGGCCGTCGCCATTCGGGGAGCTCCCTCTTGG
CGGGACGTGACAGCATGAGACAGGACGCGCTCGCCGCCTCTAACTACTTC
TATTCCCTTGGCGACCACGGAAACGAGCACGCGTACGATCACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig74622:1035..2929+

>mRNA_H-elongata_contig74622.15143.1 ID=mRNA_H-elongata_contig74622.15143.1|Name=mRNA_H-elongata_contig74622.15143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2142bp|location=Sequence derived from alignment at H-elongata_contig74622:1035..2929+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCTGCCGAAGGGCCATCGTGGCGGAGGCGGTTCCTGCGGGTCGGG
TTGCAGTCGTGGATTCAGTCCTCTTCGGAGCCGAAGCCAAGGCCATCTAC
ACCAGGCCGGATCCGGGGGAGCGGGAATTCCTTACTCGTACTGCGGAGGT
GGTCACGGCGGGGATCACCTTAACCAACCTATGATGTTTCTGCCGAAGGG
CCATCGTGGCGGAGGCGGTTCCTGCGGGTCGGGTTGCAGTCGTGGATTCA
GTCCTCTTCGGAGCCGAAGCCAAGGCCATCTACACCAGGCCGGATCCGGG
GGAGCGGGAATTCCTTACTCGTACTGCGGAGGTGGTCACGGCGGGGATCA
CCTTAACCAACCTATGGTATGCGTCGTCGTTCCTGCGCAGCGCGCGGCCG
CACTCGGGTTGTCGCACCTTCCTCAGCATGCGATGGGCCCGTGCACATCG
AGGGGCAGCCCCCCTCGGGACGTCCACTTCCCAACTCTAGCTCACTCCAC
CTCCGCCGGTAGTGCGCATGGCCACGGGCATGGACGTTACCCTTCGCATA
CCCGCTCCCACTCGTACTCGATACCCCCTACCAGCCACGGTCATAACAGC
GGCGGTGCCGGAGGAGGCTACTCCCACCACGCGTCGCAAGGCGCCGACCA
ACATCTCGCGGTTGGCCCGCAGCACCACATCGCCTTGAAGACGAGCCACT
CATACAACGTGCCTCCTCCGATGCACATGTCGCCGGTGTACCGCGAGCGA
AGGGAACGCTCCGAGTCAAGGGGGTACCAAGTGCCGTTAAACAGCGGCAG
TAGTAGTGCTACCGGAGGGGCTATCGTTGGGGGCCATCCTCTCACCGAGT
ACGAGCGATCGAAGTATGATATGTCCGTCCCTTCCACGTCTTACCCGCCT
CCGGGCTGGAGCGGTGACGGCGCGGGTATCCGAGGAATGGGCCACGAGAC
TATAAGGTCGCAGTCGCCGCCCACAGCGGTGCGCTCTGCGCACGGCACTA
GAAACGGAGGTGGGGCGCCTCGTCCGGTGCAAACTCAGTCCCGAGGATAT
GACAAGCAGTACCCGCCGTCTAGGTATAGCCCAGCGAGCGGCCCCGTGGA
CAGTTTTCCTCCGGGAATACCGTTAACCGGCCGTCGCCATTCGGGGAGCT
CCCTCTTGGCGGGACGTGACAGCATGAGACAGGACGCGCTCGCCGCCTCT
AACTACTTCTATTCCCTTGGCGACCACGGAAACGAGCACGCGTACGATCA
CGACGTATGCGTCGTCGTTCCTGCGCAGCGCGCGGCCGCACTCGGGTTGT
CGCACCTTCCTCAGCATGCGATGGGCCCGTGCACATCGAGGGGCAGCCCC
CCTCGGGACGTCCACTTCCCAACTCTAGCTCACTCCACCTCCGCCGGTAG
TGCGCATGGCCACGGGCATGGACGTTACCCTTCGCATACCCGCTCCCACT
CGTACTCGATACCCCCTACCAGCCACGGTCATAACAGCGGCGGTGCCGGA
GGAGGCTACTCCCACCACGCGTCGCAAGGCGCCGACCAACATCTCGCGGT
TGGCCCGCAGCACCACATCGCCTTGAAGACGAGCCACTCATACAACGTGC
CTCCTCCGATGCACATGTCGCCGGTGTACCGCGAGCGAAGGGAACGCTCC
GAGTCAAGGGGGTACCAAGTGCCGTTAAACAGCGGCAGTAGTAGTGCTAC
CGGAGGGGCTATCGTTGGGGGCCATCCTCTCACCGAGTACGAGCGATCGA
AGTATGATATGTCCGTCCCTTCCACGTCTTACCCGCCTCCGGGCTGGAGC
GGTGACGGCGCGGGTATCCGAGGAATGGGCCACGAGACTATAAGGTCGCA
GTCGCCGCCCACAGCGGTGCGCTCTGCGCACGGCACTAGAAACGGAGGTG
GGGCGCCTCGTCCGGTGCAAACTCAGTCCCGAGGATATGACAAGCAGTAC
CCGCCGTCTAGGTATAGCCCAGCGAGCGGCCCCGTGGACAGTTTTCCTCC
GGGAATACCGTTAACCGGCCGTCGCCATTCGGGGAGCTCCCTCTTGGCGG
GACGTGACAGCATGAGACAGGACGCGCTCGCCGCCTCTAACTACTTCTAT
TCCCTTGGCGACCACGGAAACGAGCACGCGTACGATCACGAC
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