mRNA_H-elongata_contig74605.15141.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74605.15141.1
Unique NamemRNA_H-elongata_contig74605.15141.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74605.15141.1 vs. uniprot
Match: D8LQE4_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE4_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-8
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 2 
Query:   68 CPWERHWDEDSASFFFFNPTTEASEWEVPAGWEAHFAELDAQEAGG 205
            CPW+RHWD D+ + F++N  TE SEW+VP GWEAHFA LD + +GG
Sbjct:    8 CPWQRHWD-DTGTVFYYNENTEESEWDVPPGWEAHFAGLDEKASGG 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74605.15141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE4_ECTSI1.180e-860.87WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74605contigH-elongata_contig74605:1651..2916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog2880.D8LQE4
Preferred nameWAC
KEGG koko:K15181
GOsGO:0000075,GO:0000077,GO:0000323,GO:0000993,GO:0001098,GO:0001099,GO:0003008,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005764,GO:0005773,GO:0006325,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010390,GO:0010468,GO:0010506,GO:0010507,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031331,GO:0031570,GO:0031974,GO:0031981,GO:0032006,GO:0032008,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032446,GO:0032501,GO:0032991,GO:0033523,GO:0033554,GO:0036211,GO:0042176,GO:0042177,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044783,GO:0044877,GO:0045786,GO:0045861,GO:0045893,GO:0045935,GO:0046958,GO:0046959,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0071894,GO:0080090,GO:1901564,GO:1901799,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903432,GO:1903506,GO:1903508,GO:1904263,GO:1990904,GO:2000058,GO:2000059,GO:2000112,GO:2001141
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5104@1,KOG0152@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Exons2
Model size1243
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74605.15141.1prot_H-elongata_contig74605.15141.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74605 2026..2861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.794727-UTR-H-elongata_contig74605:1650..20251622931149.794727-UTR-H-elongata_contig74605:1650..2025Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74605 1651..2025 -
1691679718.8103883-UTR-H-elongata_contig74605:1650..20251691679718.8103883-UTR-H-elongata_contig74605:1650..2025Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74605 1651..2025 -
1622931149.8430085-UTR-H-elongata_contig74605:2861..29161622931149.8430085-UTR-H-elongata_contig74605:2861..2916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74605 2862..2916 -
1691679718.8439589-UTR-H-elongata_contig74605:2861..29161691679718.8439589-UTR-H-elongata_contig74605:2861..2916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74605 2862..2916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.8126597-CDS-H-elongata_contig74605:2025..22821622931149.8126597-CDS-H-elongata_contig74605:2025..2282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74605 2026..2282 -
1691679718.821896-CDS-H-elongata_contig74605:2025..22821691679718.821896-CDS-H-elongata_contig74605:2025..2282Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74605 2026..2282 -
1622931149.827616-CDS-H-elongata_contig74605:2305..28611622931149.827616-CDS-H-elongata_contig74605:2305..2861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74605 2306..2861 -
1691679718.8323677-CDS-H-elongata_contig74605:2305..28611691679718.8323677-CDS-H-elongata_contig74605:2305..2861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74605 2306..2861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74605.15141.1

>prot_H-elongata_contig74605.15141.1 ID=prot_H-elongata_contig74605.15141.1|Name=mRNA_H-elongata_contig74605.15141.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp
MEGECPWERHWDEDSASFFFFNPTTEASEWEVPAGWEAHFAELDAQEAGG
GSTATAVVSDPPANDEDPSIPVEVGAGDQADEGEEQDNYAVGHGEGAEVR
DDTGTSPDDGDDAVAFEEGTTVQDPDGRYGYGDDDQNRHEPNGRQDIRTV
DANGDTFSAAESSVASATVSPEDYTVTTSDPGACAARRVHGRRRRYTCHH
STHCCCPSGYSCRMYLDKNRGRIRQRVLLQRGHRRVLLGRTLGIYSLPRC
LARRWGVGLCRGRGGRRRGG*
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mRNA from alignment at H-elongata_contig74605:1651..2916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74605.15141.1 ID=mRNA_H-elongata_contig74605.15141.1|Name=mRNA_H-elongata_contig74605.15141.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-elongata_contig74605:1651..2916- (Himanthalia elongata Himel1 dioecious)
AGAGGAAGAAGGTGTTCTTTCGTACGATATCCTAATAAGATACGTCGCCA
CTACAATGGAAGGAGAGTGTCCATGGGAGCGTCACTGGGATGAAGATTCC
GCTTCATTCTTTTTTTTCAATCCCACAACAGAGGCTAGCGAGTGGGAAGT
TCCGGCAGGTTGGGAAGCGCACTTCGCTGAACTCGATGCCCAAGAGGCTG
GTGGTGGTTCGACTGCTACCGCTGTCGTATCTGACCCTCCTGCCAACGAT
GAAGATCCTTCTATTCCCGTCGAGGTGGGTGCTGGTGATCAGGCTGATGA
AGGTGAAGAACAGGATAATTACGCTGTTGGCCACGGCGAAGGTGCGGAAG
TAAGGGATGATACTGGTACTTCACCAGACGACGGTGACGATGCCGTAGCT
TTTGAGGAGGGCACGACAGTCCAGGATCCCGATGGAAGATATGGTTACGG
TGACGACGACCAGAATAGACATGAACCGAACGGAAGACAAGATATTCGTA
CCGTCGATGCGAATGGCGACACCTTTTCAGCGGCGGAAAGCTCCGTAGCG
AGCGCGACGGTATCTCCTGAGGATTATACTGTAACGACGAGCGATCCTGG
TGCTTGTGCCGGTGGCGATGCCAGCGATGAAGAGCGCGACGAGTTCATGG
GAGGCGGCGTCGGTACACCTGCCATCATAGCACCCACTGCTGCTGCCCAA
GCGGATACTCCTGTCGCATGTATCTGGATAAAAACAGAGGACGAATCCGG
CAACGTGTTCTACTACAACGAGGTCACAGAAGAGTCCTCCTGGGAAGAAC
CCTTGGAATATACTCGCTTCCACGCTGCCTCGCGAGACGCTGGGGAGTCG
GGCTCTGCCGAGGAAGAGGCGGTCGCCGCCGAGGAGGGTGATGGTGACGA
CGAGAGGGAGGAGAGCGATCAAATGCAGGAGGAGGATTATCACCACGAGA
TAGAGGATCACCCAGAAGAGGAACATGAAGATCAAATGGAAGTATACGAG
GAAGTTGAGGCGGAGGATCAGGGGTTTCAAATGGAGGAGGACGGAGAGGA
CGAGGAAGAGTACTCACGTTCTCCAACGGTCGTTTCACCCCTTACCCCGG
ACGCCAACACGGCGGCCCAGGAAATACACCGGCAACAGCATGTACAAGGC
AATGCCACAGCTACCCGATCCTCCTTGCGCCTCCGCCGCGACTACCCATC
GCCGGATCTCGAGACTGGCGGTGGCGGCGGTGTACCGTTTCAGTCCTACG
AAGGCGACTATTCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig74605:1651..2916-

>mRNA_H-elongata_contig74605.15141.1 ID=mRNA_H-elongata_contig74605.15141.1|Name=mRNA_H-elongata_contig74605.15141.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig74605:1651..2916- (Himanthalia elongata Himel1 dioecious)
ATGGAAGGAGAGTGTCCATGGGAGCGTCACTGGGATGAAGATTCCGCTTC
ATTCTTTTTTTTCAATCCCACAACAGAGGCTAGCGAGTGGGAAGTTCCGG
CAGGTTGGGAAGCGCACTTCGCTGAACTCGATGCCCAAGAGGCTGGTGGT
GGTTCGACTGCTACCGCTGTCGTATCTGACCCTCCTGCCAACGATGAAGA
TCCTTCTATTCCCGTCGAGGTGGGTGCTGGTGATCAGGCTGATGAAGGTG
AAGAACAGGATAATTACGCTGTTGGCCACGGCGAAGGTGCGGAAGTAAGG
GATGATACTGGTACTTCACCAGACGACGGTGACGATGCCGTAGCTTTTGA
GGAGGGCACGACAGTCCAGGATCCCGATGGAAGATATGGTTACGGTGACG
ACGACCAGAATAGACATGAACCGAACGGAAGACAAGATATTCGTACCGTC
GATGCGAATGGCGACACCTTTTCAGCGGCGGAAAGCTCCGTAGCGAGCGC
GACGGTATCTCCTGAGGATTATACTGTAACGACGAGCGATCCTGGTGCTT
GTGCCGATGGAAGGAGAGTGTCCATGGGAGCGTCACTGGGATGAAGATTC
CGCTTCATTCTTTTTTTTCAATCCCACAACAGAGGCTAGCGAGTGGGAAG
TTCCGGCAGGTTGGGAAGCGCACTTCGCTGAACTCGATGCCCAAGAGGCT
GGTGGTGGTTCGACTGCTACCGCTGTCGTATCTGACCCTCCTGCCAACGA
TGAAGATCCTTCTATTCCCGTCGAGGTGGGTGCTGGTGATCAGGCTGATG
AAGGTGAAGAACAGGATAATTACGCTGTTGGCCACGGCGAAGGTGCGGAA
GTAAGGGATGATACTGGTACTTCACCAGACGACGGTGACGATGCCGTAGC
TTTTGAGGAGGGCACGACAGTCCAGGATCCCGATGGAAGATATGGTTACG
GTGACGACGACCAGAATAGACATGAACCGAACGGAAGACAAGATATTCGT
ACCGTCGATGCGAATGGCGACACCTTTTCAGCGGCGGAAAGCTCCGTAGC
GAGCGCGACGGTATCTCCTGAGGATTATACTGTAACGACGAGCGATCCTG
GTGCTTGTGCCGCGCGACGAGTTCATGGGAGGCGGCGTCGGTACACCTGC
CATCATAGCACCCACTGCTGCTGCCCAAGCGGATACTCCTGTCGCATGTA
TCTGGATAAAAACAGAGGACGAATCCGGCAACGTGTTCTACTACAACGAG
GTCACAGAAGAGTCCTCCTGGGAAGAACCCTTGGAATATACTCGCTTCCA
CGCTGCCTCGCGAGACGCTGGGGAGTCGGGCTCTGCCGAGGAAGAGGCGG
TCGCCGCCGAGGAGGGTGACGCGACGAGTTCATGGGAGGCGGCGTCGGTA
CACCTGCCATCATAGCACCCACTGCTGCTGCCCAAGCGGATACTCCTGTC
GCATGTATCTGGATAAAAACAGAGGACGAATCCGGCAACGTGTTCTACTA
CAACGAGGTCACAGAAGAGTCCTCCTGGGAAGAACCCTTGGAATATACTC
GCTTCCACGCTGCCTCGCGAGACGCTGGGGAGTCGGGCTCTGCCGAGGAA
GAGGCGGTCGCCGCCGAGGAGGGTGA
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