mRNA_H-elongata_contig74596.15138.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74596.15138.1
Unique NamemRNA_H-elongata_contig74596.15138.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: A0A6H5KSZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 8.100e-22
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    7 GRSYRSKGRRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKI-------------EASSEWGVRAVNDIAVGTFICKLAGQ 222
            GR Y SKGR LD GHP+QIYECN+NC CH+  CRNRLVQ+GMTC I             E   +WGV AV  I   +F+C +AGQ
Sbjct:  341 GRQYSSKGRLLDEGHPSQIYECNVNCRCHVDDCRNRLVQRGMTCNIKVLYLGSSRRRVLEGCGKWGVTAVRKIPARSFVCTVAGQ 425          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: A0A2L2YP06_PARTP (Histone-lysine N-methyltransferase EHMT1 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YP06_PARTP)

HSP 1 Score: 67.0 bits (162), Expect = 8.520e-12
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   52 PAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQ 222
            P  ++ECN  CSC   SCRNR+VQ G+TC+++        WGVR + DI  GTFIC+  G+
Sbjct:   11 PPMLFECNRACSCWALSCRNRVVQNGITCRLQLIRTRGKGWGVRTLKDIPKGTFICEYVGE 71          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: A0A3Q2EEC0_CYPVA (Histone-lysine N-methyltransferase SETMAR n=2 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2EEC0_CYPVA)

HSP 1 Score: 66.6 bits (161), Expect = 2.550e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    7 GRSYRSKGR-----RLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQV 225
            G++Y S GR     R D+G+ + ++ECN  C+C   SC NR+VQ+G+  ++E     S  WGVR + +I  GTF+C+ AG+V
Sbjct:   71 GQAYESNGRLLHLNRTDSGYSSPVFECNALCTCG-DSCSNRVVQRGLQLRLEVFHTESKGWGVRTLEEIPRGTFVCEYAGEV 151          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: A0A8C5M030_9ANUR (SET domain bifurcated histone lysine methyltransferase 2 n=3 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5M030_9ANUR)

HSP 1 Score: 66.2 bits (160), Expect = 5.770e-11
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   25 KGRRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQV 225
            K +RL +  P  +YECN+ C C  K C+NR+VQ G+  +++     S  WGVR ++DI  GTF+C  AG++
Sbjct:  340 KHKRLRSPIPTGLYECNITCKCDPKMCQNRVVQHGIQVRLQVFKTKSKGWGVRCLDDIDSGTFVCTFAGRI 410          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: A0A2H6NA99_MICLE (Uncharacterized protein (Fragment) n=1 Tax=Micrurus lemniscatus carvalhoi TaxID=129465 RepID=A0A2H6NA99_MICLE)

HSP 1 Score: 65.9 bits (159), Expect = 7.130e-11
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 RDGRSYRSKGRRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEASSE----WGVRAVNDIAVGTFICKLAGQ 222
            ++G S+   G+RL+    + +YEC+L CSC    C+NRLVQ G+  +++  S     WGVR ++DI  GTF+C  AG+
Sbjct:  279 KNGPSHGYTGKRLEEPISSGVYECSLLCSCDKNMCQNRLVQHGLQVRLQVFSTEKKGWGVRCLDDIDKGTFVCTYAGK 356          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: A0A4Y2IW83_ARAVE (Histone-lysine N-methyltransferase EHMT1 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2IW83_ARAVE)

HSP 1 Score: 65.9 bits (159), Expect = 7.860e-11
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   52 PAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQ 222
            P  ++ECN  CSC   +CRNR++Q GMTC+++        WGVR + DI  GTFIC+  G+
Sbjct:  441 PPMLFECNRACSCWSLNCRNRVLQSGMTCRLQLIRTKGKGWGVRTLKDIPKGTFICEYVGE 501          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: B2GRL9_DANRE (Setdb1b protein n=1 Tax=Danio rerio TaxID=7955 RepID=B2GRL9_DANRE)

HSP 1 Score: 65.9 bits (159), Expect = 7.950e-11
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   31 RRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQV 225
            +RLD   P  IYECN  C C+++ C NRLVQ G+  +++     +  WG+R ++DIA G+F+C  AG++
Sbjct:  769 KRLDECLPTGIYECNKRCRCNMQMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKI 837          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: STB1B_DANRE (Histone-lysine N-methyltransferase SETDB1-B n=8 Tax=Danio rerio TaxID=7955 RepID=STB1B_DANRE)

HSP 1 Score: 65.9 bits (159), Expect = 8.010e-11
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   31 RRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQV 225
            +RLD   P  IYECN  C C+++ C NRLVQ G+  +++     +  WG+R ++DIA G+F+C  AG++
Sbjct:  769 KRLDECLPTGIYECNKRCRCNMQMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKI 837          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: A0A6P7WTI9_9AMPH (histone-lysine N-methyltransferase SETDB1 isoform X1 n=4 Tax=Microcaecilia unicolor TaxID=1415580 RepID=A0A6P7WTI9_9AMPH)

HSP 1 Score: 65.9 bits (159), Expect = 8.020e-11
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   31 RRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQV 225
            +RLD   P  +YECN  C C+L  C NRLVQ G+  +++     +  WG+R ++DIA G+F+C  AG++
Sbjct:  778 KRLDECMPTGVYECNKRCKCNLVMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKI 846          
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Match: UPI001ABE5D53 (histone-lysine N-methyltransferase SETDB1 isoform X1 n=4 Tax=Bufo bufo TaxID=8384 RepID=UPI001ABE5D53)

HSP 1 Score: 65.9 bits (159), Expect = 8.020e-11
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   31 RRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA----SSEWGVRAVNDIAVGTFICKLAGQV 225
            +RLD   P  +YECN  C C+L  C NRLVQ G+  +++     +  WG+R ++DIA G+F+C  AG++
Sbjct:  819 KRLDECLPTGVYECNKRCKCNLNLCSNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKI 887          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74596.15138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSZ4_9PHAE8.100e-2254.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2L2YP06_PARTP8.520e-1247.54Histone-lysine N-methyltransferase EHMT1 (Fragment... [more]
A0A3Q2EEC0_CYPVA2.550e-1141.46Histone-lysine N-methyltransferase SETMAR n=2 Tax=... [more]
A0A8C5M030_9ANUR5.770e-1142.25SET domain bifurcated histone lysine methyltransfe... [more]
A0A2H6NA99_MICLE7.130e-1141.03Uncharacterized protein (Fragment) n=1 Tax=Micruru... [more]
A0A4Y2IW83_ARAVE7.860e-1145.90Histone-lysine N-methyltransferase EHMT1 n=1 Tax=A... [more]
B2GRL9_DANRE7.950e-1142.03Setdb1b protein n=1 Tax=Danio rerio TaxID=7955 Rep... [more]
STB1B_DANRE8.010e-1142.03Histone-lysine N-methyltransferase SETDB1-B n=8 Ta... [more]
A0A6P7WTI9_9AMPH8.020e-1142.03histone-lysine N-methyltransferase SETDB1 isoform ... [more]
UPI001ABE5D538.020e-1142.03histone-lysine N-methyltransferase SETDB1 isoform ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74596contigH-elongata_contig74596:200..849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D8LCC1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11420,ko:K14778
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04211,map00310,map04211
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1082@2759
EC2.1.1.43,3.6.4.13
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPre-SET domain
Ec32 orthologEc-14_005310.2
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.5858448-CDS-H-elongata_contig74596:199..2681622931149.5858448-CDS-H-elongata_contig74596:199..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74596 200..268 -
1691679718.7607973-CDS-H-elongata_contig74596:199..2681691679718.7607973-CDS-H-elongata_contig74596:199..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74596 200..268 -
1622931149.6001742-CDS-H-elongata_contig74596:693..8491622931149.6001742-CDS-H-elongata_contig74596:693..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74596 694..849 -
1691679718.7710605-CDS-H-elongata_contig74596:693..8491691679718.7710605-CDS-H-elongata_contig74596:693..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74596 694..849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74596.15138.1prot_H-elongata_contig74596.15138.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74596 200..849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74596.15138.1

>prot_H-elongata_contig74596.15138.1 ID=prot_H-elongata_contig74596.15138.1|Name=mRNA_H-elongata_contig74596.15138.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
RDGRSYRSKGRRLDNGHPAQIYECNLNCSCHLKSCRNRLVQKGMTCKIEA
SSEWGVRAVNDIAVGTFICKLAGQV
back to top

mRNA from alignment at H-elongata_contig74596:200..849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74596.15138.1 ID=mRNA_H-elongata_contig74596.15138.1|Name=mRNA_H-elongata_contig74596.15138.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=650bp|location=Sequence derived from alignment at H-elongata_contig74596:200..849- (Himanthalia elongata Himel1 dioecious)
CGCGACGGTCGCAGCTACCGGTCGAAGGGACGTCGCCTCGACAACGGCCA CCCGGCGCAGATCTACGAGTGCAACCTCAACTGCAGCTGCCACTTGAAGA GCTGCCGGAACCGGCTTGTGCAAAAGGGCATGACTTGCAAGATCGAGGCG AGCAGTGTCTATCTTGCTTTTCCCATTCGCTGAAGCGCTCCCCCGAGGTC ACGCGTCGGCGCCATCCGCGCCGCGGCGCAATACTAGTAGGCGCGAGTCA AATATGAAGGAATTCGTTTTTTTCCCCCGGCGTTTAGGAGCGCGTTCGTG GTTGCTATCGTACGAAACAACGACGAGAAATGTAAAAGCCCTTGTCCTGC GCTCAGAGCCTCTACTATTCGAGGTCCGAGTACTCGCAGAGAGGTATCTG TCTGTGGCAAAAAAGAAATGTAGATAGCAGGCGTTACACGTTGCCTTCGT ATCGCGTGTCCACCTTGCAACGGCCCGATAGCTTACTCATGTCAGCCTTC CCACCCTTACCCGACCTCTTTATCGGCTTCAAGGTGGCGCACCTCGGCCC CTCGCCTCAGTTTGTGGAAGGCTGCGATAAGGAGTGGGGCGTGAGGGCCG TAAATGACATCGCGGTGGGAACTTTCATTTGCAAGCTTGCGGGTCAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig74596:200..849-

>mRNA_H-elongata_contig74596.15138.1 ID=mRNA_H-elongata_contig74596.15138.1|Name=mRNA_H-elongata_contig74596.15138.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig74596:200..849- (Himanthalia elongata Himel1 dioecious)
CGCGACGGTCGCAGCTACCGGTCGAAGGGACGTCGCCTCGACAACGGCCA
CCCGGCGCAGATCTACGAGTGCAACCTCAACTGCAGCTGCCACTTGAAGA
GCTGCCGGAACCGGCTTGTGCAAAAGGGCATGACTTGCAAGATCGAGGCG
AGCAGTCGCGACGGTCGCAGCTACCGGTCGAAGGGACGTCGCCTCGACAA
CGGCCACCCGGCGCAGATCTACGAGTGCAACCTCAACTGCAGCTGCCACT
TGAAGAGCTGCCGGAACCGGCTTGTGCAAAAGGGCATGACTTGCAAGATC
GAGGCGAGCAGTGAGTGGGGCGTGAGGGCCGTAAATGACATCGCGGTGGG
AACTTTCATTTGCAAGCTTGCGGGTCAGGTAGAGTGGGGCGTGAGGGCCG
TAAATGACATCGCGGTGGGAACTTTCATTTGCAAGCTTGCGGGTCAGGTA
back to top