mRNA_H-elongata_contig74440.15130.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74440.15130.1
Unique NamemRNA_H-elongata_contig74440.15130.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: D7FQ08_ECTSI (Metallophos domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ08_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.930e-34
Identity = 70/153 (45.75%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    1 PPEDQFRNGDFFRRWGDFLYCQWPVELCNRENFVTVSKDAPPVLASFFARQNDACIEAFRAR--------------------------------------------------------AGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            PPE Q R GDF RRW D+ YC WP +LC+RE+FVTV +DAPPV+A FFARQNDACI+AFRA+                                                         G  +T +ISFSHFVPRQELCPEKR L EP LTKV
Sbjct:  200 PPELQLRRGDFLRRWRDYSYCHWPEDLCSREDFVTVDRDAPPVIAEFFARQNDACIQAFRAKRPLTRRAAAGAPPIGDGGXXXXGAXXGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGDTTKIISFSHFVPRQELCPEKRLLWEPQLTKV 352          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: W7T6H8_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6H8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.880e-18
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   31 FFRRWGDFLYCQWPVE-LCNRENFVTVSKDAPPVLASFFARQNDACIEAFRARAG---VSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            F +RW DF  C+WP E L +RE+FV++  +    LA +FARQN+  +   R R        TTVISFSHF+PR+ELCPEKRFL EP L KV
Sbjct:  351 FEQRWADFRCCKWPEEVLQDREDFVSLQTEKQE-LAVWFARQNEIFLADTRVRGEGPPAEKTTVISFSHFLPREELCPEKRFLLEPMLPKV 440          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: A0A7R9YED7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YED7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.920e-14
Identity = 44/90 (48.89%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   31 FFRRWGDFLYCQWPVELCNRENFVTVSKDAPPVLASFFARQN-DAC--IEAFRARAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            F RRW DF +C+WP  L  RE+ V +  D+ PVLA  F      AC   E      G S     S SHF+PR+ELCPEKRFL EP L KV
Sbjct:  217 FERRWSDFRFCRWPTSLVKREDLVRL--DSGPVLAEAFGELTIGACGGRELSDLHEGRSPKLCFSLSHFLPRKELCPEKRFLVEPLLAKV 304          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: A0A813D5I7_9DINO (FTSH10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D5I7_9DINO)

HSP 1 Score: 67.4 bits (163), Expect = 5.510e-11
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    1 PPEDQFRNGDFFRRWGDFLYCQWPV----ELCNRENFVTVSKDAPPV-LASFFARQNDACIEAFRA---RAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            PPE +   G     W DF   +WP     E+  RE      KD     ++  FA  N   +EA  A    +G S T VISFSH++PRQEL PEKRFL +  L KV
Sbjct: 1175 PPEQKSMVG-----WMDFRLLKWPQLLVDEVVRREGDFKFGKDGTSTAISEIFAEMNQPLLEAIEAMKHESGDSDTVVISFSHYLPRQELFPEKRFLVDSTLAKV 1274          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: A0A812JJA6_SYMMI (FTSH10 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812JJA6_SYMMI)

HSP 1 Score: 67.4 bits (163), Expect = 5.560e-11
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    1 PPEDQFRNGDFFRRWGDFLYCQWPV----ELCNRENFVTVSKDAPPV-LASFFARQNDACIEAFRA---RAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            PPE +   G     W DF   +WP     E+  RE      KD     ++  FA  N   +EA  A    +G S T VISFSH++PRQEL PEKRFL +  L KV
Sbjct: 1816 PPEQKSMVG-----WMDFRLLKWPQLLVDEVVRREGDFKFGKDGTSTAISEIFAEMNQPLLEAIEAMKHESGDSDTVVISFSHYLPRQELFPEKRFLVDSTLAKV 1915          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: A0A1Q9DD58_SYMMI (ATP-dependent zinc metalloprotease FTSH 10, mitochondrial n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DD58_SYMMI)

HSP 1 Score: 67.4 bits (163), Expect = 5.610e-11
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    1 PPEDQFRNGDFFRRWGDFLYCQWPV----ELCNRENFVTVSKDAPPV-LASFFARQNDACIEAFRA---RAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            PPE +   G     W DF   +WP     E+  RE      KD     ++  FA  N   +EA  A    +G S T VISFSH++PRQEL PEKRFL +  L KV
Sbjct: 3137 PPEQKSMVG-----WMDFRLLKWPQLLVDEVVRREGDFKFGKDGTSTAISEIFAEMNQPLLEAIEAMKHESGDSDTVVISFSHYLPRQELFPEKRFLVDSTLAKV 3236          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: A0A0E0R0S3_ORYRU (Uncharacterized protein n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0R0S3_ORYRU)

HSP 1 Score: 66.6 bits (161), Expect = 6.660e-11
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   49 DFLYCQWPVELCNRENFVTVSKDAPPVLASFFARQNDACIEAFRARAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            DF  CQWP +L N +            LA +F + ND   +A       SS  +++FSHFVPRQELCPEKR L  PNL KV
Sbjct:  124 DFHACQWPPDLANEDE----------ALALYFDKLNDRNQDAIE-EVKKSSKQILTFSHFVPRQELCPEKRMLYYPNLPKV 193          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: A0A0E0M953_ORYPU (Metallophos domain-containing protein n=3 Tax=Oryzinae TaxID=1648021 RepID=A0A0E0M953_ORYPU)

HSP 1 Score: 66.6 bits (161), Expect = 6.820e-11
Identity = 37/81 (45.68%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   49 DFLYCQWPVELCNRENFVTVSKDAPPVLASFFARQNDACIEAFRARAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            DF  CQWP +L N +            LA +F + ND   +A       SS  +++FSHFVPRQELCPEKR L  PNL KV
Sbjct:  128 DFHACQWPPDLANEDE----------ALALYFDKLNDRNQDAIE-EVKKSSKQILTFSHFVPRQELCPEKRMLYYPNLPKV 197          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: K8Z4P1_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4P1_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 7.430e-11
Identity = 35/57 (61.40%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  130 LASFFARQNDACIEAFRARAGVS---STTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            LA +FARQN+      R R   S    TTVISFSHF+PR+ELCPEKRFL EP L KV
Sbjct:    1 LAVWFARQNEFFFADTRVRGEGSPAEKTTVISFSHFLPREELCPEKRFLLEPMLPKV 57          
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Match: A0A7S4NQC9_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NQC9_GUITH)

HSP 1 Score: 64.3 bits (155), Expect = 8.000e-11
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   31 FFRRWGDFLYCQWP-VELCNRENFVTVSKDAPPVLASFFARQNDACIEAFRA-RAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV 291
            F  RW DF YC+WP V       +  VS  +   LA  FA+ N+  +E F   ++   S  VI+ SHFVPRQEL PEKRFL    L KV
Sbjct:   20 FEERWADFRYCKWPEVPEFPIGEWSNVSSKSQG-LADMFAKLNEPWVEMFATVKSKRESIKVITLSHFVPRQELVPEKRFLITSELPKV 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74440.15130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ08_ECTSI1.930e-3445.75Metallophos domain-containing protein n=1 Tax=Ecto... [more]
W7T6H8_9STRA8.880e-1852.75Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9YED7_9STRA1.920e-1448.89Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A813D5I7_9DINO5.510e-1140.95FTSH10 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A812JJA6_SYMMI5.560e-1140.95FTSH10 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A1Q9DD58_SYMMI5.610e-1140.95ATP-dependent zinc metalloprotease FTSH 10, mitoch... [more]
A0A0E0R0S3_ORYRU6.660e-1145.68Uncharacterized protein n=1 Tax=Oryza rufipogon Ta... [more]
A0A0E0M953_ORYPU6.820e-1145.68Metallophos domain-containing protein n=3 Tax=Oryz... [more]
K8Z4P1_NANGC7.430e-1161.40Uncharacterized protein (Fragment) n=2 Tax=Nannoch... [more]
A0A7S4NQC9_GUITH8.000e-1144.94Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74440contigH-elongata_contig74440:2329..2967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D7FQ08
EggNOG free text desc.Calcineurin-like phosphoesterase
EggNOG OGs2QPJI@2759,COG1409@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMetallo-dependent phosphatase-like
Ec32 orthologEc-01_007930.1
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.696382-CDS-H-elongata_contig74440:2328..25261622931148.696382-CDS-H-elongata_contig74440:2328..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74440 2329..2526 -
1691679718.4608865-CDS-H-elongata_contig74440:2328..25261691679718.4608865-CDS-H-elongata_contig74440:2328..2526Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74440 2329..2526 -
1622931148.7123811-CDS-H-elongata_contig74440:2874..29671622931148.7123811-CDS-H-elongata_contig74440:2874..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74440 2875..2967 -
1691679718.4723043-CDS-H-elongata_contig74440:2874..29671691679718.4723043-CDS-H-elongata_contig74440:2874..2967Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74440 2875..2967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74440.15130.1prot_H-elongata_contig74440.15130.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74440 2329..2967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74440.15130.1

>prot_H-elongata_contig74440.15130.1 ID=prot_H-elongata_contig74440.15130.1|Name=mRNA_H-elongata_contig74440.15130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
PPEDQFRNGDFFRRWGDFLYCQWPVELCNRENFVTVSKDAPPVLASFFAR
QNDACIEAFRARAGVSSTTVISFSHFVPRQELCPEKRFLSEPNLTKV
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mRNA from alignment at H-elongata_contig74440:2329..2967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74440.15130.1 ID=mRNA_H-elongata_contig74440.15130.1|Name=mRNA_H-elongata_contig74440.15130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=639bp|location=Sequence derived from alignment at H-elongata_contig74440:2329..2967- (Himanthalia elongata Himel1 dioecious)
CCACCAGAGGATCAGTTTAGAAATGGGGACTTCTTTCGCCGATGGGGAGA CTTTCTTTACTGCCAATGGCCCGTCGAGCTGTGCAATCGCGAGGTAAGTG GCGGAAGCGAACATCGGGGTCGGGATACGGCGTTGCCAGTGAGCATGCGG TATTCTTCTTGCCTGATGGTCTGCCCACCCTGATTCGAAACGCCTCTCTC TCCGGGGCTCTGGTCTGGTGATCCAGTCGGGGTCCAGGTCGCCGCTGCCA ACCATCGACACGACATCATGGTCGTTTGTTTCGCCCTCCAGGCTCGCTTT TTATTCCGAAGACATTATCGTTAATTTGACCTATGAATGTATGCGCATCC GATCAATTCCCAACTGAGTGCAACCCCGCCCCCCCCCCCCTGCTCGTTTC CCTTGCCTCTCTTTTTGGATGTCTCGTGTTGTCTCTGTAAGAACTTTGTG ACCGTCTCCAAGGACGCCCCACCGGTGCTCGCCAGCTTCTTCGCAAGGCA AAACGACGCCTGCATCGAGGCGTTCCGCGCCCGCGCCGGAGTGAGCAGCA CTACTGTGATCAGCTTTTCGCATTTCGTGCCGCGGCAGGAGCTTTGTCCC GAGAAAAGGTTCCTGTCCGAGCCGAACCTCACCAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig74440:2329..2967-

>mRNA_H-elongata_contig74440.15130.1 ID=mRNA_H-elongata_contig74440.15130.1|Name=mRNA_H-elongata_contig74440.15130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig74440:2329..2967- (Himanthalia elongata Himel1 dioecious)
CCACCAGAGGATCAGTTTAGAAATGGGGACTTCTTTCGCCGATGGGGAGA
CTTTCTTTACTGCCAATGGCCCGTCGAGCTGTGCAATCGCGAGCCACCAG
AGGATCAGTTTAGAAATGGGGACTTCTTTCGCCGATGGGGAGACTTTCTT
TACTGCCAATGGCCCGTCGAGCTGTGCAATCGCGAGAACTTTGTGACCGT
CTCCAAGGACGCCCCACCGGTGCTCGCCAGCTTCTTCGCAAGGCAAAACG
ACGCCTGCATCGAGGCGTTCCGCGCCCGCGCCGGAGTGAGCAGCACTACT
GTGATCAGCTTTTCGCATTTCGTGCCGCGGCAGGAGCTTTGTCCCGAGAA
AAGGTTCCTGTCCGAGCCGAACCTCACCAAGGTAAACTTTGTGACCGTCT
CCAAGGACGCCCCACCGGTGCTCGCCAGCTTCTTCGCAAGGCAAAACGAC
GCCTGCATCGAGGCGTTCCGCGCCCGCGCCGGAGTGAGCAGCACTACTGT
GATCAGCTTTTCGCATTTCGTGCCGCGGCAGGAGCTTTGTCCCGAGAAAA
GGTTCCTGTCCGAGCCGAACCTCACCAAGGTA
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