mRNA_H-elongata_contig74373.15124.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: D7FN92_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN92_ECTSI) HSP 1 Score: 395 bits (1016), Expect = 4.420e-126 Identity = 205/246 (83.33%), Postives = 216/246 (87.80%), Query Frame = 1
Query: 1 VKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRVNETLCKVSSEASEEAATEGGAGDA----GEEVSATGSG----------NNGAPDSEDGSSYRHRLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGPRRLVVLNT 696
VKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRVNETLCKVSSEASEEAA E G+G + E+++A G G A E+GSSYRHRLSNVNFINMG +QKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGK+HLFKRSLLLIKSWWVYESRAYTGSNMLSRITE+ALATMVLAVVNQHHARLHTPLQVMALFF MHSHFDWS+YCWCIEGPRRL L+T
Sbjct: 647 VKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRVNETLCKVSSEASEEAAEEEGSGTSVGGCPEKITAVGEGATPKQEGGDGGGAAIRKEEGSSYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIKSWWVYESRAYTGSNMLSRITESALATMVLAVVNQHHARLHTPLQVMALFFQMHSHFDWSRYCWCIEGPRRLDTLHT 892
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE) HSP 1 Score: 387 bits (993), Expect = 1.280e-120 Identity = 200/245 (81.63%), Postives = 211/245 (86.12%), Query Frame = 1
Query: 1 VKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRVNETLCKVSSEASEEAATEGGAGDA----GEEVSATGSGNNGAPDSEDG---------SSYRHRLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGPRRLVVLNT 696
VKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVR+NETLCKVSSEASEE E G G + E+++A G G P E G YRHRLSNVNFINMG +QKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGK+HLFKRSLLLIKSWWVYESRAYTGSNMLSRITE+ALATMVLAVVNQHHARLHTPLQVMA+FFHMHSHFDWS+YCWCIEGPRRL L+T
Sbjct: 720 VKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRLNETLCKVSSEASEETDAEEGPGTSVGGCPEKITAVGEG--ATPKQEGGXXXAAVRKEDGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIKSWWVYESRAYTGSNMLSRITESALATMVLAVVNQHHARLHTPLQVMAVFFHMHSHFDWSRYCWCIEGPRRLDTLHT 962
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: A0A7N2R4X3_QUELO (Uncharacterized protein n=2 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2R4X3_QUELO) HSP 1 Score: 110 bits (276), Expect = 4.370e-26 Identity = 55/133 (41.35%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 274 RHRLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGP 672
R + N++ I+ ++++KC+V N + VDI NQ+G + T+ LE+ D+L+GK+HLFKRS++LIK+W YESR + L ++ AL T+VL + +Q H+ L+ PL V+ F S FDW YC + GP
Sbjct: 83 RFEVKNIHCID-AEVKRVKCIVQN-IVVDISFNQLGGLCTLCFLEQVDRLVGKDHLFKRSIILIKAWCYYESRILGAHHGL--LSTYALETLVLYIFHQFHSSLNAPLAVLYRFLDYFSRFDWESYCISLSGP 211
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: D8SJ08_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SJ08_SELML) HSP 1 Score: 112 bits (280), Expect = 8.530e-26 Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 280 RLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGPRRLVVL 690
R+ V +I ++ IKC+V+N + VDI NQ+G + T+ LEE D+L+G++HLFKRS++L+K+W YESR + L I+ AL T+VL + + HA L PL V+ F S+FDW KYC + GP L L
Sbjct: 101 RVKEVQYIQAEVVKIIKCLVEN-IVVDISFNQLGGLCTLCFLEEVDRLIGRDHLFKRSIILVKAWCYYESRILGAHHGL--ISTYALETLVLYIFHVFHASLRGPLGVLYRFLEFFSNFDWDKYCLSLWGPIPLSAL 234
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: A0A061QQX2_9CHLO (Nt domain of poly polymerase and terminal uridylyl transferase-containing (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQX2_9CHLO) HSP 1 Score: 113 bits (283), Expect = 1.040e-25 Identity = 74/233 (31.76%), Postives = 120/233 (51.50%), Query Frame = 1
Query: 13 LGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQ------EKSWFVRVNETL-CKVSSEASEEAATEGGAGDAGEEVSATGSGNNGAPDSEDGSSYRHRLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGPRRLVVL 690
L F G ++ YLPD ++ +SAFL H + +W ++ L + + ++A + +EDGS ++ +V IN ++ +KC+VDN + VD+ NQ+G + T+ LE D+ +G NHLFKRS++L+K+W YESR + L ++ AL T+VL + N +H L +PL+V+ F + S FDW +YC C+EG L +
Sbjct: 46 LQVDAFTFGSVPLKTYLPDGDIDLSAFLLHKPPPGSNIKDAWASKLAGFLELEQQKQLGQQADRQ----------------------AEDGSC---QVKDVQVIN-AEVKLLKCLVDN-IVVDVSFNQIGGLCTLNFLECVDRKIGCNHLFKRSVILVKAWCYYESRLLGAHHGL--LSTYALETLVLYIFNAYHRELRSPLKVLQKFLDVFSSFDWDRYCACLEGRIHLASI 249
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: UPI001244B807 (uncharacterized protein LOC115990562 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001244B807) HSP 1 Score: 110 bits (275), Expect = 1.240e-25 Identity = 55/133 (41.35%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 274 RHRLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGP 672
R + N++ I+ ++++KC+V N + VDI NQ+G + T+ LE+ D+L+GK+HLFKRS++LIK+W YESR + L ++ AL T+VL + +Q H+ L+ PL V+ F S FDW YC + GP
Sbjct: 52 RFEVKNIHCID-AEVKRVKCIVQN-IMVDISFNQLGGLCTLCFLEQVDRLVGKDHLFKRSIILIKAWCYYESRILGAHHGL--LSTYALETLVLYIFHQFHSSLNAPLAVLYRFLDYFSRFDWESYCISLSGP 180
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: A0A7N2LR45_QUELO (Uncharacterized protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LR45_QUELO) HSP 1 Score: 110 bits (275), Expect = 1.510e-25 Identity = 55/133 (41.35%), Postives = 85/133 (63.91%), Query Frame = 1
Query: 274 RHRLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGP 672
R + N++ I+ ++++KC+V N + VDI NQ+G + T+ LE+ D+L+GK+HLFKRS++LIK+W YESR + L ++ AL T+VL + +Q H+ L+ PL V+ F S FDW YC + GP
Sbjct: 70 RFEVKNIHCID-AEVKRVKCIVQN-IMVDISFNQLGGLCTLCFLEQVDRLVGKDHLFKRSIILIKAWCYYESRILGAHHGL--LSTYALETLVLYIFHQFHSSLNAPLAVLYRFLDYFSRFDWESYCISLSGP 198
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: UPI000900E2E3 (uncharacterized protein LOC109159045 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900E2E3) HSP 1 Score: 114 bits (285), Expect = 1.890e-25 Identity = 57/122 (46.72%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 325 IKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGPRRLVVL 690
+KC+V N + VDI NQ+G + T+ LE+ DQL+GK+HLFKRS++LIK+W YESR + L I+ AL T+VL + + +H+ L PL V+ F S FDW KYC C+ GP R+ L
Sbjct: 146 VKCIVQN-IVVDISFNQIGGLCTLCFLEQVDQLIGKDHLFKRSIILIKAWCYYESRILGAHHGL--ISTYALETLVLYIFHLYHSTLDGPLAVLYKFLDYFSKFDWEKYCICLAGPVRISSL 264
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: J3NCN7_ORYBR (Uncharacterized protein n=7 Tax=Oryza brachyantha TaxID=4533 RepID=J3NCN7_ORYBR) HSP 1 Score: 113 bits (282), Expect = 4.870e-25 Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = 1
Query: 250 DSEDGSSYRHRLSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGPRRLVVL 690
+SE S + + FIN ++ IKCV++N + VDI NQ+G ++T+ LE D+ +GKNHLFKRS++LIK+W YESR + L ++ AL T+VL + N H LH PL+ + F S FDW KYC + GP L L
Sbjct: 62 ESEQDSGTELEIKGLQFIN-AEVKLIKCVIEN-IVVDISFNQIGGVSTLCFLELVDRKVGKNHLFKRSIMLIKAWCYYESRILGAHHGL--LSTYALETLVLYIFNIFHKSLHGPLEALYKFLEYFSKFDWEKYCISLNGPVLLSSL 204
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Match: J3MP51_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3MP51_ORYBR) HSP 1 Score: 112 bits (281), Expect = 6.560e-25 Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 1
Query: 283 LSNVNFINMGHLQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKNHLFKRSLLLIKSWWVYESRAYTGSNMLSRITEAALATMVLAVVNQHHARLHTPLQVMALFFHMHSHFDWSKYCWCIEGPRRLVVL 690
L + FI+ ++ IKCV+DN + VDI NQ+G ++T+ LE D +GKNHLFKRS++LIK+W +ESR + L I+ AL T+V+ + N H LH+PL+ + F S FDW KYC + GP L L
Sbjct: 54 LKGLQFID-AEVKLIKCVIDN-IVVDISFNQIGGVSTLCFLELVDHEVGKNHLFKRSIMLIKAWCYHESRILGAHHGL--ISTYALETLVVYIFNMFHKSLHSPLEALYKFLEYFSKFDWDKYCISLNGPVALSTL 185 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74373.15124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74373.15124.1 >prot_H-elongata_contig74373.15124.1 ID=prot_H-elongata_contig74373.15124.1|Name=mRNA_H-elongata_contig74373.15124.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp VKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRVNETLCKback to top mRNA from alignment at H-elongata_contig74373:378..2791+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74373.15124.1 ID=mRNA_H-elongata_contig74373.15124.1|Name=mRNA_H-elongata_contig74373.15124.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2414bp|location=Sequence derived from alignment at H-elongata_contig74373:378..2791+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74373:378..2791+ >mRNA_H-elongata_contig74373.15124.1 ID=mRNA_H-elongata_contig74373.15124.1|Name=mRNA_H-elongata_contig74373.15124.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig74373:378..2791+ (Himanthalia elongata Himel1 dioecious)back to top |