mRNA_H-elongata_contig74341.15122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74341.15122.1
Unique NamemRNA_H-elongata_contig74341.15122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74341.15122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74341contigH-elongata_contig74341:2042..2508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size423
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.1285324-UTR-H-elongata_contig74341:2041..20851622931148.1285324-UTR-H-elongata_contig74341:2041..2085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74341 2042..2085 +
1691679718.2153625-UTR-H-elongata_contig74341:2041..20851691679718.2153625-UTR-H-elongata_contig74341:2041..2085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74341 2042..2085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.1424305-CDS-H-elongata_contig74341:2085..25081622931148.1424305-CDS-H-elongata_contig74341:2085..2508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74341 2086..2508 +
1691679718.2253346-CDS-H-elongata_contig74341:2085..25081691679718.2253346-CDS-H-elongata_contig74341:2085..2508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74341 2086..2508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74341.15122.1prot_H-elongata_contig74341.15122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74341 2086..2508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74341.15122.1

>prot_H-elongata_contig74341.15122.1 ID=prot_H-elongata_contig74341.15122.1|Name=mRNA_H-elongata_contig74341.15122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MEGSERGRMVAYGATPTLIILQQVVTDTLHDFFLLCLFSGSRKSNQMRSN
PQREADSDTVHVTEIGELRARNCCRVGRARGCKWKAVITGTGSRARAIER
DQSNESSRYPLCSFYINKNSGCGCCHVSCIWRWLLDCVAR*
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mRNA from alignment at H-elongata_contig74341:2042..2508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74341.15122.1 ID=mRNA_H-elongata_contig74341.15122.1|Name=mRNA_H-elongata_contig74341.15122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=467bp|location=Sequence derived from alignment at H-elongata_contig74341:2042..2508+ (Himanthalia elongata Himel1 dioecious)
CGACACTATAGGGTCAATTAGACGTGGAGAAAAATAGGGCGATAATGGAA
GGGAGCGAACGGGGGCGTATGGTGGCATATGGGGCAACACCGACGTTGAT
CATCTTGCAACAGGTGGTTACGGATACTCTACACGATTTTTTTCTCCTGT
GTCTTTTCAGCGGTTCGAGGAAATCAAATCAAATGAGATCGAATCCACAA
CGCGAAGCTGATAGCGATACAGTACATGTAACCGAAATCGGCGAATTACG
CGCCCGAAACTGTTGTAGAGTCGGACGCGCTCGTGGGTGCAAATGGAAGG
CCGTTATCACGGGAACAGGATCCCGAGCGAGAGCTATCGAGCGAGATCAG
TCAAACGAAAGTAGCAGATATCCCTTATGCAGTTTCTACATCAATAAAAA
CAGTGGCTGTGGCTGCTGCCATGTCTCGTGTATTTGGCGATGGCTGCTTG
ACTGTGTGGCGCGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig74341:2042..2508+

>mRNA_H-elongata_contig74341.15122.1 ID=mRNA_H-elongata_contig74341.15122.1|Name=mRNA_H-elongata_contig74341.15122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig74341:2042..2508+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGGGAGCGAACGGGGGCGTATGGTGGCATATGGGGCAACACCGAC
GTTGATCATCTTGCAACAGGTGGTTACGGATACTCTACACGATTTTTTTC
TCCTGTGTCTTTTCAGCGGTTCGAGGAAATCAAATCAAATGAGATCGAAT
CCACAACGCGAAGCTGATAGCGATACAGTACATGTAACCGAAATCGGCGA
ATTACGCGCCCGAAACTGTTGTAGAGTCGGACGCGCTCGTGGGTGCAAAT
GGAAGGCCGTTATCACGGGAACAGGATCCCGAGCGAGAGCTATCGAGCGA
GATCAGTCAAACGAAAGTAGCAGATATCCCTTATGCAGTTTCTACATCAA
TAAAAACAGTGGCTGTGGCTGCTGCCATGTCTCGTGTATTTGGCGATGGC
TGCTTGACTGTGTGGCGCGTTAAATGGAAGGGAGCGAACGGGGGCGTATG
GTGGCATATGGGGCAACACCGACGTTGATCATCTTGCAACAGGTGGTTAC
GGATACTCTACACGATTTTTTTCTCCTGTGTCTTTTCAGCGGTTCGAGGA
AATCAAATCAAATGAGATCGAATCCACAACGCGAAGCTGATAGCGATACA
GTACATGTAACCGAAATCGGCGAATTACGCGCCCGAAACTGTTGTAGAGT
CGGACGCGCTCGTGGGTGCAAATGGAAGGCCGTTATCACGGGAACAGGAT
CCCGAGCGAGAGCTATCGAGCGAGATCAGTCAAACGAAAGTAGCAGATAT
CCCTTATGCAGTTTCTACATCAATAAAAACAGTGGCTGTGGCTGCTGCCA
TGTCTCGTGTATTTGGCGATGGCTGCTTGACTGTGTGGCGCGTTAA
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