mRNA_H-elongata_contig74303.15119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74303.15119.1
Unique NamemRNA_H-elongata_contig74303.15119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: D7FT22_ECTSI (OSJNBb0118P14.3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT22_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.790e-32
Identity = 67/174 (38.51%), Postives = 93/174 (53.45%), Query Frame = 1
Query:    7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN------------------------------LHRLKPEAHDKLTNTPHEEWANCAARANVIWDQTTSNMSETTN 438
            + F +D AHL+G WNGV+LT++  D NN +   A A+ ++E+  SYEY LG +  +  M +++   TTTC TD  KG+D+A+ KL PL E R C+ H+L++                              LH + P AHDKL   PHE WA  A R NV W Q  SN +E+ N
Sbjct:   15 KAFCLDGAHLRGSWNGVILTITTTDANNNINLCAFAVVREENAKSYEYLLGKAMGSKRMKKFLNATTTTCFTDNDKGADAAMNKLAPLTEVRHCLEHILRSCRIWVKHGKTHAYEAAKSSTEPEFLACMECLHDISPTAHDKLDAIPHERWAYYAGRQNVCWLQVNSNPAESMN 188          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5KWU6_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.480e-30
Identity = 65/174 (37.36%), Postives = 92/174 (52.87%), Query Frame = 1
Query:    7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN------------------------------LHRLKPEAHDKLTNTPHEEWANCAARANVIWDQTTSNMSETTN 438
            + F +D AHL+G WNGV+LT++  D NN +   A A+ ++E+  SYEY LG +  +  M +++    TTC TD  KG+D+A+ KL PL E R C+ H+L++                              L+ + P AHDKL   PHE WA  A R NV W Q  SN +E+ N
Sbjct:  209 KAFCLDGAHLRGSWNGVILTITTTDANNSINLCAFAVVREENAKSYEYLLGKAMGSKRMKKFLNATATTCFTDNDKGADAAMNKLAPLTEVRHCLEHILRSCRIWAKHGKAHAYKAAKSSTEPEFLACMERLYDISPTAHDKLDAIPHERWAYYAGRQNVCWLQVNSNPAESMN 382          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5JAP9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 9.460e-25
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   19 MDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN 309
            MD  H KGDW+G +  +SVK  NN V+ VAT +  KE   +Y Y + N+ +N EM  ++ + TTT ITD HKGS+SA+P+++ LAE  +C  H+LKN
Sbjct:    1 MDFCHCKGDWDGPIGAISVKSANNNVLQVATCLHPKETADAYTYLMSNALKNPEMAAFLNKPTTTIITDKHKGSESAVPRVLQLAEHLKCAEHILKN 97          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.050e-24
Identity = 49/100 (49.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   10 VFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKN 309
            V  MD  HLKG+WNG+MLTL+ KD NN ++HVAT I  KED   Y+  L N K+N +M + +    TT  TD HKG+  AL    PLA+ R C+ HL+ N
Sbjct:    9 VVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILN 108          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.050e-21
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
            +V  MD  HLKG+WNG+MLTL+ KD NN  +HVAT I  KED   Y+  L N K+N +M + +    TT  TD HKG+  AL    PLA+ R C+ HL+ NL
Sbjct:  192 KVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNL 293          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.990e-20
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNLHRL 321
            +V   D  HLKG+WNG++LTL+ KD NN ++HVAT I  KED   Y+  L N K+N +M + +    T   TD HKG+  AL    PLA+ R C+ H++ N+ ++
Sbjct:  169 KVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHIILNIEKI 273          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5K043_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K043_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.390e-19
Identity = 51/101 (50.50%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   10 VFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
            V  MD  HLKG+WNGVMLTL+ KD NN   HVAT I  KED   ++  L N K N +M + +    TT  TD HKG+  AL    PLA+ R C+ HLL NL
Sbjct:   10 VVGMDGGHLKGEWNGVMLTLTCKDANNENSHVATVIGPKEDTSLHKTLLRNWK-NPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLLLNL 109          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.600e-19
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
            +V  MD  HLKG+WNG+MLTL+ KD NN  +HVA  I  KED   Y   L N K+N +M + +    TT  TD HK +  AL    PLA+ R C+ HL+ N+
Sbjct:  195 KVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLILNI 296          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.300e-19
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHLLKNL 312
            +V  MD  HLKG+WNG+MLTL+ KD +N +++VAT I  KED   Y+  L N K N +M + +    TT  TD HKG+  AL +  PLA+ R C+ HL+ NL
Sbjct:  234 KVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLLRNCK-NPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNL 334          
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Match: A0A6H5KMN6_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.340e-17
Identity = 44/94 (46.81%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 QVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEYFLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRC 288
            +V  MD AHLKG WNG MLTL+ KD NN  +HVATAI   E+   Y+  +   K+N +M +++    TT  TD HKG   AL    PLA+ R C
Sbjct:  192 KVVGMDGAHLKGKWNGQMLTLTCKDANNENIHVATAIGPVENTDLYKTLIRGCKKNPKMRDFLEDSKTTFYTDQHKGGKCALEGEAPLAQHRNC 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74303.15119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FT22_ECTSI1.790e-3238.51OSJNBb0118P14.3 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5KWU6_9PHAE2.480e-3037.36SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAP9_9PHAE9.460e-2547.42MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K734_9PHAE5.050e-2449.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LCT1_9PHAE1.050e-2149.02MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAG6_9PHAE3.990e-2042.86MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K043_9PHAE1.390e-1950.50MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L490_9PHAE1.600e-1946.08MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUM0_9PHAE3.300e-1947.06MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KMN6_9PHAE2.340e-1746.81MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74303contigH-elongata_contig74303:1247..2428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue5.4e-08
Seed eggNOG ortholog161934.XP_010678146.1
KEGG koko:K17086
EggNOG OGs2CN5X@1,2QU1T@2759,37T40@33090,3GGBN@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.8456647-CDS-H-elongata_contig74303:1246..13811622931147.8456647-CDS-H-elongata_contig74303:1246..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74303 1247..1381 -
1691679718.0917842-CDS-H-elongata_contig74303:1246..13811691679718.0917842-CDS-H-elongata_contig74303:1246..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74303 1247..1381 -
1622931147.8621855-CDS-H-elongata_contig74303:2119..24281622931147.8621855-CDS-H-elongata_contig74303:2119..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74303 2120..2428 -
1691679718.1036217-CDS-H-elongata_contig74303:2119..24281691679718.1036217-CDS-H-elongata_contig74303:2119..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74303 2120..2428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74303.15119.1prot_H-elongata_contig74303.15119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74303 1247..2428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74303.15119.1

>prot_H-elongata_contig74303.15119.1 ID=prot_H-elongata_contig74303.15119.1|Name=mRNA_H-elongata_contig74303.15119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MGQVFTMDSAHLKGDWNGVMLTLSVKDGNNCVVHVATAITKKEDDPSYEY
FLGNSKRNTEMGEWITRETTTCITDGHKGSDSALPKLVPLAESRRCVLHL
LKNLHRLKPEAHDKLTNTPHEEWANCAARANVIWDQTTSNMSETTNSM
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mRNA from alignment at H-elongata_contig74303:1247..2428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74303.15119.1 ID=mRNA_H-elongata_contig74303.15119.1|Name=mRNA_H-elongata_contig74303.15119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1182bp|location=Sequence derived from alignment at H-elongata_contig74303:1247..2428- (Himanthalia elongata Himel1 dioecious)
ATGGGGCAGGTATTCACCATGGATTCTGCACATCTCAAGGGTGACTGGAA TGGCGTTATGTTGACGTTGTCAGTCAAAGACGGCAACAACTGTGTCGTCC ATGTGGCAACAGCCATTACCAAGAAAGAAGACGATCCTTCGTACGAGTAT TTTCTGGGGAATTCGAAGAGGAATACAGAAATGGGGGAATGGATTACCCG TGAGACCACCACATGCATCACAGACGGGCACAAGGGATCGGACTCTGCCC TTCCGAAGCTGGTTCCTCTCGCGGAGTCCCGCCGGTGTGTTCTTCATCTA CTGAAGAACGTACCTGCGTCGCATCGATGAGCTACCTGCCGTCGGATCGG TGGCGAAACGTACCTAGGTGCAATTTGTTCCTTGTGCTGAAGGAAGGCAA TTGATTGTGATTGTTCACGGCGTTATAGAAATAAAAGACTGGTTGGATTG TGTTGTGTTGGTGTACTTATTTTCCCTGTTCAGCTGACCACGAGCAGAAG GCAAACAAATCCGGTTGATCTCCTGCTAAATGCGTGACCAACAACTAAGA TTTAATAAATATTCAGACCCGAGACCCCGCTTCAGCTGCAGCATGGTCAT TTGTACTGGCATGATGTGCGGTGACTCAAGTGTTGTAATTGCGGCACAGG GATCCGCAGTCTACAATCGTGACTTCATCACTGCGGATGTGAAAGCCACC GAGAGACTGGTGTATTGATCGTCTCCTTAGTCTTCTGATGCCGTTTCCAT TACTCAGATATATGCTCCTGGAAAACGTGAGAATGCATGCGTTTTGTGCG GTTTAGGTTTGTAGCTTGTAAGTACTGATCGATGATACTGGACTTCATGG CCTTAGAAAAAATATAAATTTCTGTAATAGCAACGTGGTCATGAATTACC TGTGTGACTATTGAATTACAGTACATCTCTCCCGATTGTCATCGACGTGC CGTTTCTGTGGGTACCCCTTCCTGGGTTGGCATGGGGAAAGTCTTCGATG CAGCTAGACACCCGACCAAATCCGGCTTCGACTCTTCGATGAAACAGCTT CACCGTCTCAAGCCGGAGGCCCACGACAAGCTGACGAACACCCCCCACGA AGAATGGGCAAACTGCGCAGCACGAGCGAACGTCATTTGGGACCAAACAA CGTCGAACATGTCGGAAACGACGAATAGCATG
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Coding sequence (CDS) from alignment at H-elongata_contig74303:1247..2428-

>mRNA_H-elongata_contig74303.15119.1 ID=mRNA_H-elongata_contig74303.15119.1|Name=mRNA_H-elongata_contig74303.15119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig74303:1247..2428- (Himanthalia elongata Himel1 dioecious)
ATGGGGCAGGTATTCACCATGGATTCTGCACATCTCAAGGGTGACTGGAA
TGGCGTTATGTTGACGTTGTCAGTCAAAGACGGCAACAACTGTGTCGTCC
ATGTGGCAACAGCCATTACCAAGAAAGAAGACGATCCTTCGTACGAGTAT
TTTCTGGGGAATTCGAAGAGGAATACAGAAATGGGGGAATGGATTACCCG
TGAGACCACCACATGCATCACAGACGGGCACAAGGGATCGGACTCTGCCC
TTCCGAAGCTGGTTCCTCTCGCGGAGTCCCGCCGGTGTGTTCTTCATCTA
CTGAAGAACATGGGGCAGGTATTCACCATGGATTCTGCACATCTCAAGGG
TGACTGGAATGGCGTTATGTTGACGTTGTCAGTCAAAGACGGCAACAACT
GTGTCGTCCATGTGGCAACAGCCATTACCAAGAAAGAAGACGATCCTTCG
TACGAGTATTTTCTGGGGAATTCGAAGAGGAATACAGAAATGGGGGAATG
GATTACCCGTGAGACCACCACATGCATCACAGACGGGCACAAGGGATCGG
ACTCTGCCCTTCCGAAGCTGGTTCCTCTCGCGGAGTCCCGCCGGTGTGTT
CTTCATCTACTGAAGAACCTTCACCGTCTCAAGCCGGAGGCCCACGACAA
GCTGACGAACACCCCCCACGAAGAATGGGCAAACTGCGCAGCACGAGCGA
ACGTCATTTGGGACCAAACAACGTCGAACATGTCGGAAACGACGAATAGC
ATGCTTCACCGTCTCAAGCCGGAGGCCCACGACAAGCTGACGAACACCCC
CCACGAAGAATGGGCAAACTGCGCAGCACGAGCGAACGTCATTTGGGACC
AAACAACGTCGAACATGTCGGAAACGACGAATAGCATG
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