mRNA_H-elongata_contig74283.15116.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: D8LIP7_ECTSI (DEAD box helicase DEAD/DEAH box helicase-like protein (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP7_ECTSI) HSP 1 Score: 281 bits (718), Expect = 4.810e-88 Identity = 145/169 (85.80%), Postives = 148/169 (87.57%), Query Frame = 1
Query: 4 QVVAGNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWS 510
+VV+G DLMCKSRTGSGKTLAFAIPIIEALDRQ E VQ GRLFSR AYGRFPRAICV PTRELAKQVEREF RIAP LSSLAVYGG A GPQIGEMRRGVD+IVGTPGRIIDHIE NLNL EIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWS
Sbjct: 220 KVVSGQDLMCKSRTGSGKTLAFAIPIIEALDRQSGGE-SVQRXXXXXGRLFSRGAYGRFPRAICVAPTRELAKQVEREFNRIAPELSSLAVYGGTAQGPQIGEMRRGVDIIVGTPGRIIDHIEQGNLNLSEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWS 387
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: A0A835YGZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGZ8_9STRA) HSP 1 Score: 181 bits (459), Expect = 4.990e-50 Identity = 101/174 (58.05%), Postives = 125/174 (71.84%), Query Frame = 1
Query: 7 VVAGNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPEN--KQTTLWSATMP 522
+++G D++CKSRTGSGKTLAFAIPIIE+++R+ GR R GR P AI VTPTRELAKQV+REF+R+AP L SL+VYGG + Q+ +R GVDV+VGTPGR+ID +E R L+L +F VLDEAD MLQMGFQ+ VE+IF MP +QT LWSATMP
Sbjct: 138 IMSGKDMICKSRTGSGKTLAFAIPIIESIERE--------------GRPPRR---GRKPVAIVVTPTRELAKQVQREFERVAPQLQSLSVYGGSPVQAQVAALRGGVDVVVGTPGRVIDLLESRALDLNASRFAVLDEADQMLQMGFQDDVEKIFGFMPAAGARQTMLWSATMP 294
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: A0A7W8KFZ7_9DEIO (RNA helicase n=1 Tax=Deinococcus metalli TaxID=1141878 RepID=A0A7W8KFZ7_9DEIO) HSP 1 Score: 168 bits (426), Expect = 3.740e-46 Identity = 88/172 (51.16%), Postives = 119/172 (69.19%), Query Frame = 1
Query: 4 QVVAGNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWSATM 519
Q + G DL+ ++RTG+GKTLAFA+PII+ L+ S+E+G R PRAI V PTRELAKQV EF + L+++ VYGG + GPQ G +RRGVD++VGTPGR+IDH+E NL+LG+++F VLDEAD ML +GF E +E I ++ PE +QT L+SAT+
Sbjct: 33 QTLQGRDLIGRARTGTGKTLAFALPIIQTLE--PSRERG------------------RLPRAIIVAPTRELAKQVADEFAKSGGALTTVTVYGGASYGPQEGALRRGVDIVVGTPGRLIDHLERGNLDLGDVKFAVLDEADEMLSVGFAEAIETILEKTPETRQTMLFSATL 184
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: L1IQZ7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQZ7_GUITC) HSP 1 Score: 164 bits (415), Expect = 4.990e-46 Identity = 80/169 (47.34%), Postives = 117/169 (69.23%), Query Frame = 1
Query: 16 GNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWSATMP 522
G D++ +SRTGSGKT+AFA+P+IE + ++++ +GR P + + PTRELA Q++REF RI P ++S VYGGV++G Q+ +R+GVDV+VGTPGR+IDH+ + L++ ++ +LDEAD ML+MGFQ+ VE I + +P +KQT LWSATMP
Sbjct: 38 GKDVVVRSRTGSGKTIAFALPVIEKILANKTRK------------------HGRLPSCLVIAPTRELAIQIDREFTRIQPEVASTCVYGGVSIGMQVSALRKGVDVVVGTPGRLIDHLVNGTLDVSAVETFILDEADEMLKMGFQDDVERIIEYLPPSKQTNLWSATMP 188
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: Q1J0S9_DEIGD (RNA helicase n=5 Tax=Deinococcus TaxID=1298 RepID=Q1J0S9_DEIGD) HSP 1 Score: 167 bits (423), Expect = 9.460e-46 Identity = 90/170 (52.94%), Postives = 115/170 (67.65%), Query Frame = 1
Query: 10 VAGNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWSATM 519
+AG DL+ ++RTG+GKTLAFA+PII+ L RG R R GR PRAI + PTRELAKQV EF + P LS++ VYGG A GPQ +RRGVDV+VGTPGR+IDH+E NL+L IQ+ VLDEAD ML +GF + +E I ++ P +QT L+SAT+
Sbjct: 35 LAGKDLIGRARTGTGKTLAFALPIIQNLTAPDG--------RGSRER-------GRLPRAIVIAPTRELAKQVAEEFSKSGPQLSTVTVYGGAAYGPQENALRRGVDVVVGTPGRLIDHLERGNLDLSAIQYAVLDEADEMLSVGFADAIETILQQTPAARQTMLFSATL 189
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: A0A345IGB7_9DEIO (RNA helicase n=7 Tax=Deinococcus TaxID=1298 RepID=A0A345IGB7_9DEIO) HSP 1 Score: 167 bits (423), Expect = 9.830e-46 Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 1
Query: 16 GNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWSATM 519
G DL+ ++RTG+GKTLAFA+PII L+ S+E+ R PRAI V PTRELAKQV EF + APGLS++ VYGG A GPQ +RRGVDV+VGTPGR+IDH+E NL+L +QF VLDEAD ML +GF + +E I ++ PE +QT L+SAT+
Sbjct: 37 GRDLIGRARTGTGKTLAFALPIIMKLE--PSRERS------------------RLPRAIVVAPTRELAKQVADEFSKSAPGLSTVTVYGGAAYGPQENALRRGVDVVVGTPGRLIDHLERGNLDLSAVQFAVLDEADEMLSVGFADAIETILQKTPEERQTMLFSATL 184
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: A0A0D3AXI7_BRAOL (Helicase ATP-binding domain-containing protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3AXI7_BRAOL) HSP 1 Score: 161 bits (408), Expect = 1.350e-45 Identity = 87/169 (51.48%), Postives = 116/169 (68.64%), Query Frame = 1
Query: 16 GNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWSATMP 522
G D++ +++TG+GKTLAF IPII+ L Q G F ++ GR P+ + + PTRELAKQVE+E K AP LS++ VYGGV+ Q + RGVDV+VGTPGRIID IE R+L LGE++F VLDEAD ML +GF+E VE I + +P+ +Q+ L+SATMP
Sbjct: 128 GRDIIARAKTGTGKTLAFGIPIIKRLTEQ-----------AGDYSAFRKS--GRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEFLVLDEADQMLAVGFEEAVESILENLPQKRQSMLFSATMP 283
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: A0A7S0QES0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QES0_9CRYP) HSP 1 Score: 162 bits (409), Expect = 1.660e-45 Identity = 84/170 (49.41%), Postives = 111/170 (65.29%), Query Frame = 1
Query: 16 GNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPEN-KQTTLWSATMP 522
G D++ +SRTGSGKT+ FA+P++E L + +A GR PR I + PTRELA Q+ REF+RI P LS++ +YGG + PQ +RRGVDV+VGTPGR+ DH+ L L +++ +LDEAD ML+MGFQE VE I K +PE +QT LWSATMP
Sbjct: 135 GKDMVVRSRTGSGKTIGFALPVVEKLIK------------------GDHSARGRKPRCIVLAPTRELAVQIHREFERIGPQLSTVCIYGGASYIPQESALRRGVDVVVGTPGRVTDHMNKGTLMLDQVKIFILDEADEMLKMGFQEDVENIMKSVPEQGRQTNLWSATMP 286
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: A0A2I9D1Y6_9DEIO (RNA helicase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A2I9D1Y6_9DEIO) HSP 1 Score: 165 bits (417), Expect = 6.800e-45 Identity = 88/172 (51.16%), Postives = 117/172 (68.02%), Query Frame = 1
Query: 4 QVVAGNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWSATM 519
Q +AG DL+ ++RTG+GKTLA+A+PII+ L+ S+E+G R PRAI + PTRELAKQV EF + L+++ VYGG + GPQ G +RRGVDV+VGTPGRIIDH+E NL+L IQ+ VLDEAD ML +GF + +E I + PE +QT L+SAT+
Sbjct: 33 QTLAGKDLIGRARTGTGKTLAYALPIIQNLE--PSRERG------------------RLPRAIILAPTRELAKQVAEEFSKSGQHLATVTVYGGASYGPQEGALRRGVDVVVGTPGRIIDHLERGNLDLSNIQYTVLDEADEMLSVGFADAIETILQRTPETRQTMLFSATL 184
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Match: A0A4S4CHD9_9DEIO (RNA helicase n=2 Tax=Deinococcus TaxID=1298 RepID=A0A4S4CHD9_9DEIO) HSP 1 Score: 164 bits (416), Expect = 1.010e-44 Identity = 89/172 (51.74%), Postives = 117/172 (68.02%), Query Frame = 1
Query: 4 QVVAGNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRLFSRAAYGRFPRAICVTPTRELAKQVEREFKRIAPGLSSLAVYGGVAMGPQIGEMRRGVDVIVGTPGRIIDHIEHRNLNLGEIQFCVLDEADLMLQMGFQEPVEEIFKEMPENKQTTLWSATM 519
Q +AG DL+ ++RTG+GKTLAFA+PII+AL S+E+G R PRAI V PTRELAKQV EF + L ++ VYGG + GPQ +RRGVD++VGTPGR+IDH+E NL+L E++F VLDEAD ML +GF E +E I ++ PE +QT L+SAT+
Sbjct: 33 QTLAGKDLIGRARTGTGKTLAFALPIIQALA--PSRERG------------------RLPRAIIVAPTRELAKQVADEFSKSGGELVTVTVYGGASYGPQESALRRGVDIVVGTPGRLIDHLERGNLDLTEVKFAVLDEADEMLSVGFAEAIETILQKTPEERQTMLFSATL 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74283.15116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig74283.15116.1 >prot_H-elongata_contig74283.15116.1 ID=prot_H-elongata_contig74283.15116.1|Name=mRNA_H-elongata_contig74283.15116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp MQVVAGNDLMCKSRTGSGKTLAFAIPIIEALDRQQSQEQGVQHQRGGRGRback to top mRNA from alignment at H-elongata_contig74283:240..2891+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig74283.15116.1 ID=mRNA_H-elongata_contig74283.15116.1|Name=mRNA_H-elongata_contig74283.15116.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2652bp|location=Sequence derived from alignment at H-elongata_contig74283:240..2891+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig74283:240..2891+ >mRNA_H-elongata_contig74283.15116.1 ID=mRNA_H-elongata_contig74283.15116.1|Name=mRNA_H-elongata_contig74283.15116.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig74283:240..2891+ (Himanthalia elongata Himel1 dioecious)back to top |