mRNA_H-elongata_contig74229.15114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74229.15114.1
Unique NamemRNA_H-elongata_contig74229.15114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74229.15114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74229contigH-elongata_contig74229:142..2506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size144
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.2028103-CDS-H-elongata_contig74229:141..2161622931147.2028103-CDS-H-elongata_contig74229:141..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74229 142..216 +
1691679717.7653613-CDS-H-elongata_contig74229:141..2161691679717.7653613-CDS-H-elongata_contig74229:141..216Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74229 142..216 +
1622931147.247712-CDS-H-elongata_contig74229:2438..25041622931147.247712-CDS-H-elongata_contig74229:2438..2504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74229 2439..2504 +
1691679717.77334-CDS-H-elongata_contig74229:2438..25041691679717.77334-CDS-H-elongata_contig74229:2438..2504Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74229 2439..2504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74229.15114.1prot_H-elongata_contig74229.15114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74229 142..2504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74229.15114.1

>prot_H-elongata_contig74229.15114.1 ID=prot_H-elongata_contig74229.15114.1|Name=mRNA_H-elongata_contig74229.15114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
LVFGQDATPYAAAKKDVSTQEAGAQVANGVYLRSPFGSYEDNPRQLQ
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mRNA from alignment at H-elongata_contig74229:142..2506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74229.15114.1 ID=mRNA_H-elongata_contig74229.15114.1|Name=mRNA_H-elongata_contig74229.15114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2365bp|location=Sequence derived from alignment at H-elongata_contig74229:142..2506+ (Himanthalia elongata Himel1 dioecious)
CTAGTTTTCGGTCAGGATGCCACTCCTTACGCAGCAGCAAAAAAAGATGT
CAGCACCCAGGAAGCTGGAGCCCAGGTAGGCTCCGCACGGACAAGTCCCA
GCAGTGATGAACGGAATGATCCACATCTATTTTGTAGCCAATGTCCACCC
TGCATATTTAATAAAGACGCTCATCGGGTTGTTGGTTGTTGTTAGATCAT
CGATCGGGTTTTGGGATTTTCACTGATTTCATGTCGATCTGATACCAATG
CTACTACTACTACTGTACTTAAGGATGCAATCAGTATTTATTTGTCGGCG
TGCAATTTTATGCCTTGGTCCTCGGTTCCATTGGTAATAATAATACTATT
ACTAAAAAAATATATTGCCATAATAATAATAGAAGACAAGATGTTCTAGA
ATAATAGTTCTCGCAAGCGCTTTGTCCTATCAGCGAGTGGTTATTACGAG
TGAGTATAGTATGTAGTAGTACTATTATTAGTATATAGTATGAGAAAAAC
GAAATATTAGCGTATACCAGTTTATAAAAATAATAATAATAGTAGAAAAT
AGTAAATAACAACGTATATATAATACATAGAATTAAATGGACGACCGTAT
ATTATTATGCTTCCGCCCCCCCCGGAATGCGAACAAAGAGCTTCATTCCC
CAAAAAGCGATTTTGAGAAGAAGAGCGCAATATATATGCCAGTTCTTAAA
TTCGCTAAACTAATGAATATGTTCTTTGTATTGCTGCTGTTTTGTTGTTG
TTCAATGTTCTCACAATGTTCTCACAATGTTATCCTAATAAAATTAATAC
GCCGATTAATCAGGACCATTAGCATTTTTATTCTCGTGGTTCGCCGAGCA
AGAGAAAAAAAATAAAGTTTGCTTGTTCACGGGTCACCCACGCGTCTCTG
AATGACCAGACATACACGCACACGGAAATATTGTCGGTTGTTCGTCGTCA
TCCGTTGGAACACATCGTCTCCCTCCATCGTCGATACTTAGTTGTTATTC
AAAAACAACCAAAAATAGAGCCACACTGTTATTATTTCCGTGTGCATGCC
AGCCTGATCTTTCACCGACCATCCGTCCCTGAATGTTATTCTATTAATAG
TTGTTGTATTGCTAATAATACTAATAACGAGAAGCCCACCGGCCACACAG
TCAGTCGCCGTAAGTATTCCGCTAGGAAGACGAAGGCTCCTAAATATAGA
GGGTCGCGATACACGTACTTACGTGAATAAAAAACAAAAAAAAACTCTCC
TAGCGGTCGAAAAATAGCCATCTTAATGTAGGTGTGTGTGTGCGTTTATT
AGAGGCTTTTGCACATACATGCTGAAGGACCTTACGCGGCCAGTTCAGCC
TTGATCGTAGCGACCAAGGGCTTCAACGAAAGAAGGAAAATAGCCCGACC
TGTTGGTGCTTGCTTCCTTGCACCTCTGGGCCAGTTTGCGTGCTGAGCTT
CACAACCGTGTTCTATTTCTCGGTCATGTGGTGGGACTGTCACCTGCTGA
ATCAACATGGCGTTTTTTCTAGGGGACTGCAGAAAAAAAAACGCACACGG
CTTAATGCAGTTACGAGGAGCCCCTGCTACCCCGATCACAGGGCACCAAA
TACCACCGTGCCAAACCCAAACAAACACCCTCCCTTATGAACCAGCTAAA
CATCCCGCGACCCAAGATAAACCATATTCACTCCTAACATACCCCCCGGT
AACTACGCAACAACAACTATTAGCCTTGAGAAGGCGAAATGTCACGGCAA
CTCTTCTTCGAAGCCGTTAACGACAAAAAAATGGAGAAACAGTCAGATCC
ATTCATTCGCTGAATAGACTCGCCTTCAAGATCACCTAAGGCCCTCCACC
CGTATGATACCACAACTTTACATATTTTCCGCTCGCAGTCTGTCACTGTC
ACTACAGCGTTGTTCAAGGAATGTATTTTAAGAAAGAAAAAATTGTAGGT
TGCTATAAAAATATTACTGGTAGTATTTAGTAATTATACTAAAATTACTA
TTATTTATTAAAGAATGTTCTGAGTTGGAATCAATCTCGGATCTCTAGCG
AATAGGGGCAAACGGGAGAATTCGATCTATATAATATATAGCAAACAAAC
TTCGATCATGATAGGTTGAGATTATTAATAGTTGAAGAGTTACGATGAAG
GAGCGATCAACTTGCGAGGCGATACAAAATAAAAAGGCCTCGTGTACAGT
AGTAGTAGTGGTACGTAGTAGTAGTTAGTCAACGCAATCTCTATAACGAA
GTCCCTCGGTGCATGTCCGGCTTAAATACCATTGCATTTTTAAACAGGTT
GCTAACGGTGTCTACTTGCGTAGTCCATTCGGCTCCTACGAAGACAACCC
GCGCCAGCTGCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig74229:142..2506+

>mRNA_H-elongata_contig74229.15114.1 ID=mRNA_H-elongata_contig74229.15114.1|Name=mRNA_H-elongata_contig74229.15114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig74229:142..2506+ (Himanthalia elongata Himel1 dioecious)
CTAGTTTTCGGTCAGGATGCCACTCCTTACGCAGCAGCAAAAAAAGATGT
CAGCACCCAGGAAGCTGGAGCCCAGCTAGTTTTCGGTCAGGATGCCACTC
CTTACGCAGCAGCAAAAAAAGATGTCAGCACCCAGGAAGCTGGAGCCCAG
GTTGCTAACGGTGTCTACTTGCGTAGTCCATTCGGCTCCTACGAAGACAA
CCCGCGCCAGCTGCAAGTTGCTAACGGTGTCTACTTGCGTAGTCCATTCG
GCTCCTACGAAGACAACCCGCGCCAGCTGCAA
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