mRNA_H-elongata_contig74104.15105.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74104.15105.1
Unique NamemRNA_H-elongata_contig74104.15105.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74104.15105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74104contigH-elongata_contig74104:1285..2289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.327726-CDS-H-elongata_contig74104:1284..15671622931146.327726-CDS-H-elongata_contig74104:1284..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74104 1285..1567 -
1691679717.5019553-CDS-H-elongata_contig74104:1284..15671691679717.5019553-CDS-H-elongata_contig74104:1284..1567Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74104 1285..1567 -
1622931146.3547688-CDS-H-elongata_contig74104:2083..22891622931146.3547688-CDS-H-elongata_contig74104:2083..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74104 2084..2289 -
1691679717.5114803-CDS-H-elongata_contig74104:2083..22891691679717.5114803-CDS-H-elongata_contig74104:2083..2289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74104 2084..2289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74104.15105.1prot_H-elongata_contig74104.15105.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74104 1285..2289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74104.15105.1

>prot_H-elongata_contig74104.15105.1 ID=prot_H-elongata_contig74104.15105.1|Name=mRNA_H-elongata_contig74104.15105.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
YFRDGASALAAYSILFYLLQHGDAVAGLVGYRAALLFVFVAASESWYAVT
TRLYVWSPRAKLMRSWNDRFQRQVENQASAETMRVYKACPKTGVVGRYVG
FYLDGMFSGEEYLAVCVASADPFLNSPTCRLRSKATTDHFGQRIESSSKS
SFYSCTSLKFNLS
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mRNA from alignment at H-elongata_contig74104:1285..2289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74104.15105.1 ID=mRNA_H-elongata_contig74104.15105.1|Name=mRNA_H-elongata_contig74104.15105.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-elongata_contig74104:1285..2289- (Himanthalia elongata Himel1 dioecious)
TACTTCAGAGACGGCGCTAGTGCACTTGCAGCATATTCTATTTTATTCTA
TCTCTTACAGCATGGCGACGCGGTGGCGGGGCTGGTGGGGTATCGGGCCG
CTCTTCTCTTCGTGTTCGTCGCAGCGTCCGAGTCTTGGTATGCTGTCACT
ACGAGGCTTTACGTCTGGAGTCCACGAGCCAAACTTATGCGGTCTTGGAA
TGATCGGTGAGTTTTAGAGTAGTCCTAACTGACGTACCTGAATCTGTATG
GAGCTATGATGGGTCGAGTCGGGCATACACGCGAAAACCTCGCATTCCTA
CAAATACTCGTTACATAATTCCTTGCTGCATTCATCGATGAGCTCTTTGA
TGAGCTAAGGCAGTGCCCGTGCAGGGCTGGTGCAGGTTGACCAACAACTG
ATTGATCATCATTCTACAGTAGTAGATGCTTGCGTTTAGTTGGTTGGTCG
TTGGTCGTTGGTCGTTGGTCCTGCCCGGCCCTGTTTACCGCTGGTTTTAT
TTTTTCTTCTCACACAAGCCTAGAAACAGCAGGCTCGTCACCGACAAGGT
GTAGGATTAAATATAAGAACAACGACAACCGGCTGGCAAATGTCATGCAT
CATGCATAATTTTCTCATTTTTGGAAAAGCTGCAAATAAAAAAAAAGGTC
TAATTTTTCCTAAGAAAAAAATGATAATGTTCCATTTCTGTACGTATGGC
CCAATTATGTTTTCTGTTTTAGTTTCCAGCGACAAGTGGAGAACCAGGCG
TCAGCTGAGACGATGCGGGTTTACAAAGCATGTCCCAAGACTGGCGTTGT
GGGTCGCTATGTGGGCTTTTATCTCGATGGGATGTTCAGCGGTGAGGAAT
ATCTCGCGGTTTGTGTGGCCTCCGCAGATCCTTTCCTAAATTCCCCCACT
TGTCGTCTAAGGTCTAAGGCGACAACCGATCATTTTGGGCAGAGAATAGA
AAGTTCCTCAAAGTCCAGTTTCTATTCATGTACATCTTTGAAATTTAATT
TGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig74104:1285..2289-

>mRNA_H-elongata_contig74104.15105.1 ID=mRNA_H-elongata_contig74104.15105.1|Name=mRNA_H-elongata_contig74104.15105.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig74104:1285..2289- (Himanthalia elongata Himel1 dioecious)
TACTTCAGAGACGGCGCTAGTGCACTTGCAGCATATTCTATTTTATTCTA
TCTCTTACAGCATGGCGACGCGGTGGCGGGGCTGGTGGGGTATCGGGCCG
CTCTTCTCTTCGTGTTCGTCGCAGCGTCCGAGTCTTGGTATGCTGTCACT
ACGAGGCTTTACGTCTGGAGTCCACGAGCCAAACTTATGCGGTCTTGGAA
TGATCGTACTTCAGAGACGGCGCTAGTGCACTTGCAGCATATTCTATTTT
ATTCTATCTCTTACAGCATGGCGACGCGGTGGCGGGGCTGGTGGGGTATC
GGGCCGCTCTTCTCTTCGTGTTCGTCGCAGCGTCCGAGTCTTGGTATGCT
GTCACTACGAGGCTTTACGTCTGGAGTCCACGAGCCAAACTTATGCGGTC
TTGGAATGATCGTTTCCAGCGACAAGTGGAGAACCAGGCGTCAGCTGAGA
CGATGCGGGTTTACAAAGCATGTCCCAAGACTGGCGTTGTGGGTCGCTAT
GTGGGCTTTTATCTCGATGGGATGTTCAGCGGTGAGGAATATCTCGCGGT
TTGTGTGGCCTCCGCAGATCCTTTCCTAAATTCCCCCACTTGTCGTCTAA
GGTCTAAGGCGACAACCGATCATTTTGGGCAGAGAATAGAAAGTTCCTCA
AAGTCCAGTTTCTATTCATGTACATCTTTGAAATTTAATTTGTCGTTTCC
AGCGACAAGTGGAGAACCAGGCGTCAGCTGAGACGATGCGGGTTTACAAA
GCATGTCCCAAGACTGGCGTTGTGGGTCGCTATGTGGGCTTTTATCTCGA
TGGGATGTTCAGCGGTGAGGAATATCTCGCGGTTTGTGTGGCCTCCGCAG
ATCCTTTCCTAAATTCCCCCACTTGTCGTCTAAGGTCTAAGGCGACAACC
GATCATTTTGGGCAGAGAATAGAAAGTTCCTCAAAGTCCAGTTTCTATTC
ATGTACATCTTTGAAATTTAATTTGTCG
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