mRNA_H-elongata_contig74081.15102.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74081.15102.1
Unique NamemRNA_H-elongata_contig74081.15102.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: D7FH04_ECTSI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH04_ECTSI)

HSP 1 Score: 369 bits (948), Expect = 8.230e-117
Identity = 219/430 (50.93%), Postives = 255/430 (59.30%), Query Frame = 1
Query:    1 EHFLLQGRRHGKADDLESAVQAFEVAVDLEPRSAPARAELGRALVRSGRGSRGFDSLVAAFEIDSFCPGVKDGFREYYRAEIEENPGDIDLHEGLAALCVDSGLTEEAAACYRRCLELSSSS---------------------LGDSSWSAVSDTARIDRWSVALFKCHASVCCWDRWSAEAKALQEAVRRQRGSTSFTPPLRAEGGRIRDAPLWQDFDLLGNV----DENPSEHAPPIMSEPSTTGQGGETSTCGFTVGEDDDGALRPPLHPFDSLSAPLSIGDCLEVAWRQSQRVLGEGRAGTYWRHNR-----------------------------ASQSP--RDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            E  L  GR+H +A DLESAV  FE A    PRSA  + ELGRALVR GRG  GF+ LVAAF IDS CPGVKDGFREYYRAEIE +P +IDLHEGLAALCVDSG  EEAAA YRRCL L +++                     L     +  +  AR DRWSVALFKC+AS+C WD W+ EA  L+ AVRR+             GGR+  + +  D DL+  +    +++  E   P   +       G++   G   G+   G  RP LHPFDSLSAPLSIGDCL VA +Q+  VL E R G      R                              S SP  RD +GRVRLGY+SGDLMGTHPLTHLMQS FGMH++  FEVFLYALNP DGS  RRRME EVENFRDLS +TA EAAA I+DDG
Sbjct:   65 ERLLALGRQHTQAGDLESAVYQFEQAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNIDLHEGLAALCVDSGNPEEAAALYRRCLGLHAAASAEGGGRTPSFSSSDPSAAGHLSSKEATEAAAAARKDRWSVALFKCNASLCQWDDWNGEALTLRTAVRRREXXXXXXXXXGGVGGRL--SSVEDDGDLVHRLLLGYEDDDFERLVPRDKQQRQGNNVGDSDNGGVN-GDAGAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTSGVLSEARGGNSGPRGRDEEKRILGEEGVGGVQGQSLRQFHSGFSSPSSSPLLRDERGRVRLGYVSGDLMGTHPLTHLMQSTFGMHDRDSFEVFLYALNPDDGSAPRRRMEREVENFRDLSMMTAGEAAAAIADDG 491          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: A0A6H5K431_9PHAE (GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K431_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 2.090e-94
Identity = 203/415 (48.92%), Postives = 237/415 (57.11%), Query Frame = 1
Query:    1 EHFLLQGRRHGKADDLESAVQAFEVAVDLEPRSAPARAELGRALVRSGRGSRGFDSLVAAFEIDSFCPGVKDGFREYYRAEIEENPGDIDLHEGLAALCVDSGLTEEAAACYRRCLELSSS----------SLGDSSWSAVSD-----------TARIDRWSVALFKCHASVCCWDRWSAEAKALQEAVRRQ----RGSTSFTPPLRAEGGRIRDAPLWQDFDLLGNV----DENPSEHAPPIMSEPSTTGQGGETSTCGFTVGEDDDGALRPPLHPFDSLSAPLSIGDCLEVAWRQSQRVLGEGRAGTYWRHNRASQSPRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSD------------FEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            E  L  GR+  +A DLESAV  FE A    PRSA  + ELGRALVR GRG  GF+ LVAAF IDS CPGVKDGFREYYRAEIE +P ++DLHEGLAALCVDSG  EEAAA YRR L L ++          S   S+ SA  D            AR DRWSVALFKC+AS+C WD W+ EA AL+ AVRR+    RG T      R EG   R + +  D DL+  +    +++  E   P   + S     G+++  G   G    G  RP LHPFDSLSAPLSIGDCL VA +Q++ VL E R G            RD   R   G   G + G   L  L  + F   + S             FEVFLYALNP DGS  RRRME EVENFRDLS +TA EAAA I+DDG
Sbjct:   65 ERLLALGRQQTQAGDLESAVYQFERAASQAPRSAVCQTELGRALVRLGRGQEGFNCLVAAFGIDSLCPGVKDGFREYYRAEIEADPNNVDLHEGLAALCVDSGNPEEAAALYRRLLGLHATATAEGSGRIRSFSSSNPSAAGDLSSKETTEAAAAARKDRWSVALFKCNASLCQWDDWNGEALALRTAVRRRGWRRRGRT------RGEGSGGRLSSMEDDGDLVHRLLLGYEDDDFERFVPRDKQQSQGNNVGDSNNGGVDGGA-GAGPSRPALHPFDSLSAPLSIGDCLAVAQQQTRGVLAEARGGD------GGPRGRDEDERTSGGEGVGGVQG-QSLRRLFHAGFSSPSSSSSLRDERGRVRLGFEVFLYALNPDDGSAPRRRMEREVENFRDLSMMTAGEAAAAIADDG 465          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: A0A835Z2W6_9STRA (Glycosyl transferase family 41-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2W6_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.340e-39
Identity = 111/342 (32.46%), Postives = 150/342 (43.86%), Query Frame = 1
Query:  172 VAAFEIDSFCPGVKDGFREYYRAEIEENPGDIDLHEGLAALCVDSGLTEEAAACYRRCLELSSSSLGDSSWSAVSDTARIDRWSVALFKCHASVCCWDRWSAEAKALQEAVRRQRGSTSFTPPLRAEGGRIRDAPLWQDFDLLGNVDENPSEHAPPIMSEPSTTGQGGETSTCGFTVGEDDDGALRPPLHPFDSLSAPLSIGDCLEVAWRQ----SQRVLGEGRAGTYWRHNRASQS-----------------PRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVEN----FRDLSALTAPEAAAVISDDG 1122
             AAF +D+F PG+K GF EYY A I  NP D+D  EGLA L  DSG   +AA  +RRC+++ ++  G + W           W  +L  C A+VC W  W  +A  L+  VRR               G +RD  +                                                  P +HPFD+LS PL+  D   +A +     S R+  E  A                             P+  + R+R+ Y++GDLMGTHPLTHLMQSVFG+H+ + FEV +YAL   DGS +R R+  ++E       DLSAL A  AAA +  DG
Sbjct:   29 AAAFALDAFAPGIKKGFEEYYLASIAANPQDLDAVEGLAVLYQDSGNYTQAAELFRRCMDMQTAPGGRADW-----------WFASLLNCRAAVCDWRAWEEDAAQLRGLVRR---------------GDVRDGDM--------------------------------------------------PVIHPFDALSRPLTAADNRVIATQYARSVSARMAAEEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQPHQ-RIRIAYVTGDLMGTHPLTHLMQSVFGLHDAARFEVRVYALCADDGSRERARVRADIERGGGALVDLSALPARAAAAALRGDG 293          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: A0A835ZDI7_9STRA (Protein O-GlcNAc transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.750e-21
Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 1
Query:  721 ALRPPLHPFDSLSAPLSIGDCLEVAWRQSQRVLGEGRAGTY--WRHNRASQSPRDTK-----GRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            A  P + PF +L  PL + D LE++ R +QR     R      +RH   +            GR+R+GY+S DL G HPL+HLMQSVFGMH+KS F+V  YAL+ +D S  R+++E EVE  RD+SAL   +AA +I  DG
Sbjct:  487 AALPSVQPFHALVYPLGLADMLEISRRYAQRARLNVRLLDLPPFRHRARAXXXXXXXXXXXXGRLRVGYVSSDL-GNHPLSHLMQSVFGMHDKSRFQVTCYALSANDNSVWRQKIEAEVEQMRDISALQPGDAARLIHADG 626          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: K3X4T5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4T5_GLOUD)

HSP 1 Score: 103 bits (256), Expect = 1.620e-20
Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = 1
Query:  682 STCGFTVGEDDDGALRPPLHPFDSLSAPLSIGDCLEVAWRQSQRV-----LGEGRAGTYWRHNRASQSPRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            S+C   V +     + P + PF +L  PLS+   L+++ R ++R      L E     Y       +S R  + R+R+GY+S DL G HPL HLMQSVFGMH KS FEVF Y+  P DGS  RR++  EVE+F+D+S ++  +AA +I  DG
Sbjct:   31 SSCPLAVDK-----VLPSVQPFHALVYPLSMQRFLDISRRYAERAKLNVSLVEMPLLRY-------KSKRSNE-RLRIGYVSSDL-GNHPLAHLMQSVFGMHTKSKFEVFCYSTTPDDGSVWRRKIASEVEHFKDISMISNGDAARLIHSDG 168          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: A0A5A8DUK4_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUK4_CAFRO)

HSP 1 Score: 103 bits (257), Expect = 2.830e-20
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  718 GALRPPLHPFDSLSAPLSIGDCLEVAWRQSQRVLGEGRAGTYWRHNRASQSPRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVIS 1113
            G L P + PF SL  PL I +  E+A   + R     RA +       S +P +   R+R+GY+S D  G HPL+HLMQSVFGMH+KS FEVF +AL+P+DGS  R ++E EVE+  DL+ L   + A +I+
Sbjct:  557 GHLLPSVQPFHSLVYPLDIREMQELARCYAARATLTARAASLPCFAMPSLNPGE---RLRVGYVSSDF-GNHPLSHLMQSVFGMHDKSRFEVFCFALSPNDGSAWRAKIEREVEHVEDLTPLNFADCARLIN 684          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: A0A7S1HPZ3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis cordata TaxID=118079 RepID=A0A7S1HPZ3_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 3.410e-19
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  730 PPLHPFDSLSAPLSIGDCLEV--AWRQSQRVLGEGRAGTYWRHNRASQSPRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            PP+ PF +++ P S    L++  A+     ++  G      RH       RD   R+RL Y+S D  G HPL+HLM SVFGMH++S FEVF +AL+P D S  RRR+  EVE+F D+S+ +A + A  IS +G
Sbjct:   42 PPVQPFHAMAYPFSEDLALKISKAYANHCEIVSRGFNLGELRHPERRPLARDQGERLRLAYVSSDF-GNHPLSHLMASVFGMHDRSRFEVFCFALSPDDRSEWRRRISQEVEHFVDVSSWSAADIARRISAEG 173          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: A0A7S3DZJ3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3DZJ3_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 3.580e-19
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  730 PPLHPFDSLSAPLSIGDCLEV--AWRQSQRVLGEGRAGTYWRHNRASQSPRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            PP+ PF +++ P S    L++  A+     ++  G      RH       RD   R+RL Y+S D  G HPL+HLM SVFGMH++S FEVF +AL+P D S  RRR+  EVE+F D+S+ +A + A  IS +G
Sbjct:  307 PPVQPFHAMAYPFSEDLALKISKAYANHCEIVSRGFNLGELRHPERRPLARDQGERLRLAYVSSDF-GNHPLSHLMASVFGMHDRSRFEVFCFALSPDDRSEWRRRISQEVEHFVDVSSWSAADIARRISAEG 438          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: A0A484DUK5_BRELC (Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUK5_BRELC)

HSP 1 Score: 99.4 bits (246), Expect = 6.580e-19
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  724 LRPPLHPFDSLSAPLSIGDCLEVAWRQSQRV-LGEGRAGTYWRHNRASQSPRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            + P + PF +L  PLS+   L+++ R ++R  L            +  Q+      R+R+GY+S DL G HPL HLMQSVFGMH+K+ F+VF YA +P DGS  R+++   VENF D+ AL+  +AA  I  DG
Sbjct:  513 VLPAVQPFHALVYPLSMQRFLDISRRYAERAKLNVSLVELPPMRFQTKQASE----RIRIGYVSSDL-GNHPLAHLMQSVFGMHDKTKFQVFCYATSPDDGSSWRKQISESVENFVDICALSNGDAARTIHADG 641          
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Match: F0WMK0_9STRA (Protein O-GlcNAc transferase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMK0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.600e-19
Identity = 55/133 (41.35%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  724 LRPPLHPFDSLSAPLSIGDCLEVAWRQSQRVLGEGRAGTYWRHNRASQSPRDTKGRVRLGYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEHEVENFRDLSALTAPEAAAVISDDG 1122
            + P + PF +L  PLS+   LE+A R + R     +   +  H    + P +   R+R+GY+S DL G HPL HLMQSVFGMH +S F++F Y+  P+D S  R+++  E E+F DLS ++  EAA  I  DG
Sbjct:  519 VLPSVQPFHALVYPLSMHCFLEIAKRYASRAKMNVQLVDFKVHQSPLKLPNE---RIRIGYVSSDL-GNHPLAHLMQSVFGMHRRSHFDIFCYSTTPNDHSCWRKKIASEAEHFIDLSQVSNGEAAERILRDG 647          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74081.15102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH04_ECTSI8.230e-11750.93UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
A0A6H5K431_9PHAE2.090e-9448.92GT41 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z2W6_9STRA8.340e-3932.46Glycosyl transferase family 41-domain-containing p... [more]
A0A835ZDI7_9STRA7.750e-2143.97Protein O-GlcNAc transferase n=1 Tax=Tribonema min... [more]
K3X4T5_GLOUD1.620e-2041.45Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5A8DUK4_CAFRO2.830e-2044.70Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S1HPZ3_9EUKA3.410e-1942.11Hypothetical protein n=1 Tax=Phaeocystis cordata T... [more]
A0A7S3DZJ3_9CHLO3.580e-1942.11Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A484DUK5_BRELC6.580e-1941.79Probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
F0WMK0_9STRA6.600e-1941.35Protein O-GlcNAc transferase n=1 Tax=Albugo laibac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74081contigH-elongata_contig74081:178..2594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue3.1e-100
Seed eggNOG ortholog2880.D7FH04
KEGG rclassRC00005,RC00059
KEGG koko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
EC2.4.1.255
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, family GT41
Ec32 orthologEc-26_002990.1
Exons4
Model size1125
Cds size1125
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74081.15102.1prot_H-elongata_contig74081.15102.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74081 178..2594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.9817564-CDS-H-elongata_contig74081:177..3481622931145.9817564-CDS-H-elongata_contig74081:177..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 178..348 -
1691679717.3482943-CDS-H-elongata_contig74081:177..3481691679717.3482943-CDS-H-elongata_contig74081:177..348Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 178..348 -
1622931146.001908-CDS-H-elongata_contig74081:815..10691622931146.001908-CDS-H-elongata_contig74081:815..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 816..1069 -
1691679717.3592935-CDS-H-elongata_contig74081:815..10691691679717.3592935-CDS-H-elongata_contig74081:815..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 816..1069 -
1622931146.0145154-CDS-H-elongata_contig74081:1162..16131622931146.0145154-CDS-H-elongata_contig74081:1162..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 1163..1613 -
1691679717.3695133-CDS-H-elongata_contig74081:1162..16131691679717.3695133-CDS-H-elongata_contig74081:1162..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 1163..1613 -
1622931146.0324183-CDS-H-elongata_contig74081:2345..25941622931146.0324183-CDS-H-elongata_contig74081:2345..2594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 2346..2594 -
1691679717.3782282-CDS-H-elongata_contig74081:2345..25941691679717.3782282-CDS-H-elongata_contig74081:2345..2594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74081 2346..2594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74081.15102.1

>prot_H-elongata_contig74081.15102.1 ID=prot_H-elongata_contig74081.15102.1|Name=mRNA_H-elongata_contig74081.15102.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=375bp
EHFLLQGRRHGKADDLESAVQAFEVAVDLEPRSAPARAELGRALVRSGRG
SRGFDSLVAAFEIDSFCPGVKDGFREYYRAEIEENPGDIDLHEGLAALCV
DSGLTEEAAACYRRCLELSSSSLGDSSWSAVSDTARIDRWSVALFKCHAS
VCCWDRWSAEAKALQEAVRRQRGSTSFTPPLRAEGGRIRDAPLWQDFDLL
GNVDENPSEHAPPIMSEPSTTGQGGETSTCGFTVGEDDDGALRPPLHPFD
SLSAPLSIGDCLEVAWRQSQRVLGEGRAGTYWRHNRASQSPRDTKGRVRL
GYLSGDLMGTHPLTHLMQSVFGMHNKSDFEVFLYALNPHDGSPQRRRMEH
EVENFRDLSALTAPEAAAVISDDG*
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mRNA from alignment at H-elongata_contig74081:178..2594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74081.15102.1 ID=mRNA_H-elongata_contig74081.15102.1|Name=mRNA_H-elongata_contig74081.15102.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2417bp|location=Sequence derived from alignment at H-elongata_contig74081:178..2594- (Himanthalia elongata Himel1 dioecious)
GAGCACTTCCTGCTCCAAGGCAGGCGACATGGAAAAGCGGACGATCTCGA GTCTGCCGTCCAGGCGTTCGAGGTCGCGGTCGACTTGGAGCCGCGGTCTG CCCCGGCAAGAGCGGAACTGGGTCGAGCCCTGGTCCGCAGTGGGCGTGGA TCGAGGGGATTCGACAGCCTAGTTGCCGCCTTCGAGATCGACTCCTTCTG CCCCGGGGTCAAGGACGGTTTCCGCGAGTACTACAGGGCGGAAATTGAGG TAAGCAGCTACTCTTGCAGCTCGTATTGTTGCCCTTCGGGCTAACTGTAC GGACAGCAGACGGAGAAGATGATGCTCCCGATGGAGTATGGTGCTCAATG GCGGGTGGAGGCAGGGGGAACGAGCATTCCGTATTTGGTTGTCTCCCAAT CTTGTCGACCATTTGTACGTTCGTGATGTCCGACTCTGTTTTTTTGCTTA AAAAGCACATCAACTCATTCAAAACCTCTGAATATCCACGCGCCTTCTTA GGGGGAGCCCTAATTGCAGTACTGGTACTACATGGAACATTGTAGTATGA AAACGCCTACGGTAGAAACCCCGGGGGATGATAACCTGCCAGCATAACAG AACGAGAAAAATTGCAAATAGGATGATTTCATGCAGAGTAAAATAGCCGT CTCATACTGGGCTGAGAAAGCGTGAAGTGGTGGACCCAACTCAACCCCTA AACCTTACCCCCAACCAAAACATCCATGGGGTGTAAATAGGGTGCTGAGG GGGGACACGAAGACATCACCCCCGGGGATTTCTACCCTTGGCGTTTTCAT TCTACAATCTATGTAGAATCAATGCTACAATTAGGGCTTGTCCCTTCTTA GCACCTTGAGAGGCGCGGTCCAGTGTGGTTCCAACTATGAAAACTGCTGA GCGTGTTTGCATAACTTACCTGATGCCCGGGTCTCCCTCGTCTGCCCGGT GCGACACGTCGAATACTCTCCACTCTAGTAGGAAAATCCCGGTGATATTG ACCTTCACGAAGGCCTGGCCGCGCTGTGCGTCGACTCCGGCCTCACCGAA GAAGCTGCCGCATGCTACCGCCGCTGCTTGGAACTCTCCTCCTCGTCGCT TGGAGACTCGTCCTGGTCAGCAGTCTCAGACACAGCGAGAATCGACCGCT GGTCCGTGGCGCTCTTCAAATGTCACGCGTCCGTGTGCTGTTGGGACCGC TGGAGCGCCGAGGCTAAGGCTCTGCAGGAGGCGGTACGGCGTCAACGAGG ATCTACATCATTCACGCCGCCACTGCGCGCAGAGGGCGGCCGTATTCGCG ATGCGCCCTTGTGGCAAGACTTCGATTTGCTCGGCAACGTCGACGAAAAC CCTAGTGAACACGCGCCGCCGATAATGTCAGAACCGTCGACGACCGGGCA AGGGGGGGAAACTTCGACTTGTGGCTTCACCGGTGTTACCTTTGGCGAAC AAGGACACGGCCGAGGGATGCAAACGGTAAGCTGCTTTAACGTGGCTGAC GATGTTATGACGCCTCGCGTGGGAGTGGGCGAAGATGACGATGGAGCGTT ACGGCCACCGCTCCACCCCTTCGACTCGCTCAGCGCTCCCCTGTCTATCG GGGACTGCCTTGAGGTGGCATGGCGGCAGTCTCAACGGGTGCTCGGGGAA GGGAGGGCGGGGACTTATTGGCGCCACAACAGGGCCTCGCAATCGCCTCG AGACACCAAGGGGAGGGTGCGCCTGGGATACCTGAGCGGGGACCTAATGG GAACACATCCCCTGACCCATCTCATGCAGGTGGAAGCGCATGTGGGGCAC GCCAGCCGTCGTCGTCGCTGGTTGACTGGCCAGTGACGGAATCTTACCGC TTTTTGTCTTTGCTCACGTTTTTTCAGGGGTGTGCCCCCCCCCCCTACAT CGGCACATTACATACGGTACCGGTACGTAGCTCCCGCGATCGCTTGATTC AGACGAAATTATGGGACATGGACTTATTAACCCCTATTGAACTCGATCCG TTTTTTCTATACTAAATTCAATATAAAACTTGAAAGGTGTGACAAAAGAA AGAAGAGAAAAACTATAACTACGTATCTCGGATGGATATGCCGCCGAACC TGATGATTGCCGTGTGGATCCACGTCACCTCGGCGCGTTGTAGTTCAGTC GTCAGCCGCTCGAGAGTCAACCCCACTTCCGCGCCTACCCCGCCCGTCCC CCCTTCCCCTCTTCTCCTCTTCTCCTTGCCTCTTGGCGCAATTTAGAGCG TGTTCGGCATGCACAACAAAAGCGACTTTGAGGTCTTCCTCTACGCACTC AATCCCCACGATGGTTCTCCGCAGAGACGCCGGATGGAGCATGAGGTGGA GAACTTTCGTGACCTCAGCGCTCTTACCGCTCCAGAGGCCGCGGCGGTGA TATCGGACGACGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig74081:178..2594-

>mRNA_H-elongata_contig74081.15102.1 ID=mRNA_H-elongata_contig74081.15102.1|Name=mRNA_H-elongata_contig74081.15102.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2250bp|location=Sequence derived from alignment at H-elongata_contig74081:178..2594- (Himanthalia elongata Himel1 dioecious)
GAGCACTTCCTGCTCCAAGGCAGGCGACATGGAAAAGCGGACGATCTCGA
GTCTGCCGTCCAGGCGTTCGAGGTCGCGGTCGACTTGGAGCCGCGGTCTG
CCCCGGCAAGAGCGGAACTGGGTCGAGCCCTGGTCCGCAGTGGGCGTGGA
TCGAGGGGATTCGACAGCCTAGTTGCCGCCTTCGAGATCGACTCCTTCTG
CCCCGGGGTCAAGGACGGTTTCCGCGAGTACTACAGGGCGGAAATTGAGG
AGCACTTCCTGCTCCAAGGCAGGCGACATGGAAAAGCGGACGATCTCGAG
TCTGCCGTCCAGGCGTTCGAGGTCGCGGTCGACTTGGAGCCGCGGTCTGC
CCCGGCAAGAGCGGAACTGGGTCGAGCCCTGGTCCGCAGTGGGCGTGGAT
CGAGGGGATTCGACAGCCTAGTTGCCGCCTTCGAGATCGACTCCTTCTGC
CCCGGGGTCAAGGACGGTTTCCGCGAGTACTACAGGGCGGAAATTGAGGA
AAATCCCGGTGATATTGACCTTCACGAAGGCCTGGCCGCGCTGTGCGTCG
ACTCCGGCCTCACCGAAGAAGCTGCCGCATGCTACCGCCGCTGCTTGGAA
CTCTCCTCCTCGTCGCTTGGAGACTCGTCCTGGTCAGCAGTCTCAGACAC
AGCGAGAATCGACCGCTGGTCCGTGGCGCTCTTCAAATGTCACGCGTCCG
TGTGCTGTTGGGACCGCTGGAGCGCCGAGGCTAAGGCTCTGCAGGAGGCG
GTACGGCGTCAACGAGGATCTACATCATTCACGCCGCCACTGCGCGCAGA
GGGCGGCCGTATTCGCGATGCGCCCTTGTGGCAAGACTTCGATTTGCTCG
GCAACGTCGACGAAAACCCTAGTGAACACGCGCCGCCGATAATGTCAGAA
CCGTCGACGACCGGGCAAGGGGGGGAAACTTCGACTTGTGGCTTCACCGG
AAAATCCCGGTGATATTGACCTTCACGAAGGCCTGGCCGCGCTGTGCGTC
GACTCCGGCCTCACCGAAGAAGCTGCCGCATGCTACCGCCGCTGCTTGGA
ACTCTCCTCCTCGTCGCTTGGAGACTCGTCCTGGTCAGCAGTCTCAGACA
CAGCGAGAATCGACCGCTGGTCCGTGGCGCTCTTCAAATGTCACGCGTCC
GTGTGCTGTTGGGACCGCTGGAGCGCCGAGGCTAAGGCTCTGCAGGAGGC
GGTACGGCGTCAACGAGGATCTACATCATTCACGCCGCCACTGCGCGCAG
AGGGCGGCCGTATTCGCGATGCGCCCTTGTGGCAAGACTTCGATTTGCTC
GGCAACGTCGACGAAAACCCTAGTGAACACGCGCCGCCGATAATGTCAGA
ACCGTCGACGACCGGGCAAGGGGGGGAAACTTCGACTTGTGGCTTCACCG
TGGGCGAAGATGACGATGGAGCGTTACGGCCACCGCTCCACCCCTTCGAC
TCGCTCAGCGCTCCCCTGTCTATCGGGGACTGCCTTGAGGTGGCATGGCG
GCAGTCTCAACGGGTGCTCGGGGAAGGGAGGGCGGGGACTTATTGGCGCC
ACAACAGGGCCTCGCAATCGCCTCGAGACACCAAGGGGAGGGTGCGCCTG
GGATACCTGAGCGGGGACCTAATGGGAACACATCCCCTGACCCATCTCAT
GCAGTGGGCGAAGATGACGATGGAGCGTTACGGCCACCGCTCCACCCCTT
CGACTCGCTCAGCGCTCCCCTGTCTATCGGGGACTGCCTTGAGGTGGCAT
GGCGGCAGTCTCAACGGGTGCTCGGGGAAGGGAGGGCGGGGACTTATTGG
CGCCACAACAGGGCCTCGCAATCGCCTCGAGACACCAAGGGGAGGGTGCG
CCTGGGATACCTGAGCGGGGACCTAATGGGAACACATCCCCTGACCCATC
TCATGCAGAGCGTGTTCGGCATGCACAACAAAAGCGACTTTGAGGTCTTC
CTCTACGCACTCAATCCCCACGATGGTTCTCCGCAGAGACGCCGGATGGA
GCATGAGGTGGAGAACTTTCGTGACCTCAGCGCTCTTACCGCTCCAGAGG
CCGCGGCGGTGATATCGGACGACGGGTGAAGCGTGTTCGGCATGCACAAC
AAAAGCGACTTTGAGGTCTTCCTCTACGCACTCAATCCCCACGATGGTTC
TCCGCAGAGACGCCGGATGGAGCATGAGGTGGAGAACTTTCGTGACCTCA
GCGCTCTTACCGCTCCAGAGGCCGCGGCGGTGATATCGGACGACGGGTGA
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