mRNA_H-elongata_contig7408.15101.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7408.15101.1
Unique NamemRNA_H-elongata_contig7408.15101.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: D7FVB5_ECTSI (Protein phosphatase type 2A regulator/ signal transducer n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVB5_ECTSI)

HSP 1 Score: 484 bits (1247), Expect = 9.130e-159
Identity = 319/716 (44.55%), Postives = 415/716 (57.96%), Query Frame = 1
Query:   25 DSKAVEEAVTNPSNWLLRNRHTGQEVEAQTFVRSVVHHTARRP-PQ--PVGPLLGWMARRNRNTGNV----AVGRLRPTLLPPSNDAITSDDHTHGAPLSPP----------GRPHTSRAISKSPACVRGKSSLLPY---PSNARSNGSIARSNSGASSTLVGASTVDGFRLSNINSTQILPRLHPGGIRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEGENTNGEATVAAEGAELPARERDGTSV---GHLVEDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRTEGLVQFATTECRRHGIRHSAAQHALQVASPVRRLSSSAGGPAAAGRARSR-----------------ERGRRGTMGVSVGRGTSGGAEERVTGLCFRPQRKRSSELANGWNFKPERDDDHSRSGSVDALCGQIGHDSTE-ARAPRAGANGGRPAA-VAEAEGNGGEPHPRAGPTVDVLVSTNNSRTRVLVAEDGGAVTVAAKLKGHNTDGVLGRHAVAHFSEDGELVISGSTDGSVHVWPTPDAEASAKT---SSRRGPARLGWGEGHERAQICEKSVAVPVALFAPDAVARSIGGESSRIIVTGDDNGSLKVF 2037
            D+ AV EAV++PS WLL+N+ TGQEVEA  F  +++   ARRP PQ   V P LG  +  +R    +    A    RPTLLPPSN  +         PL+PP          GR    R  ++SP  V G+S   P     S+ RSN     S+S  SS ++       F+L N+++TQ+LPRLHPGG+RA+SFSPSG FLAT G D RC +FRV       +T+  GE +   A VA          R  +SV   G LV+D P+RVL GHV  +V L+W+  D ALLT S+DGTVRCWHP +G+ C   +EHGG VT+VAW+P             G E  G RFLTGCMDA++RLFS+D PE E+SVL+++ VTAV+F P G++  AG + G V F+R E +    T ECRRHG RHSAAQ      SPVRRLS   G   + G    R                       T+G   G    G  EERVTGLCFRP  K  +ELA   +      ++H  SG+  +  G++G +S E A +PRAG     P A   +A G+G     R     D+LVSTN++R+R+LV+ + G VTV  KLKGH+T+G LGRH  A +S+DG L++SG+TDGSVHVWPTP      K+   SS R        EGHERA++C+K V VPVA FAP +VA+++GG SSR+IVTGD+ G+ K+F
Sbjct:   58 DTLAVYEAVSDPSKWLLKNKETGQEVEATAFADTLL---ARRPAPQWATVSPRLGSHSHGSRGWPRLQRHKAPAFQRPTLLPPSNGDVAYFPLAPAGPLTPPSLQLGFSSLSGRASPLRFGARSP--VSGQSFSRPRCGSNSHGRSN-----SDSTTSSVILSVDAPPTFKLRNMSTTQLLPRLHPGGVRAMSFSPSGAFLATCGMDRRCCVFRVQKRR---QTLALGEGSPNAAAVAVGLPVDRGMSRQPSSVCVEGRLVDDQPLRVLTGHVDSVVALAWAGGDNALLTGSSDGTVRCWHPLEGNECSEVYEHGGGVTSVAWEP-------------GGEAHGGRFLTGCMDARIRLFSLDSPEVEQSVLSERAVTAVAFCPGGQSFAAGGIAGNVEFYRMENMSLELTVECRRHGFRHSAAQRTRLATSPVRRLSVGTGDGRSNGAGGDRVXXXXXXXXXXXXXXXXXXXXXNTLGSRAGARVPGTVEERVTGLCFRPPTKGPAELAG--DCSDSDGEEHRLSGASRSTGGKMGENSQEVAPSPRAGGEVVAPQADEKDANGSGNLWVERL--EADLLVSTNDNRSRILVSGERG-VTVGFKLKGHSTEGELGRHTAARYSDDGNLIVSGATDGSVHVWPTPTTPPGTKSVTWSSGR--------EGHERARVCDKRVGVPVAFFAPASVAKNLGGTSSRVIVTGDNEGNCKIF 734          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A196S6S1_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S6S1_BLAHN)

HSP 1 Score: 100 bits (249), Expect = 7.680e-19
Identity = 82/238 (34.45%), Postives = 111/238 (46.64%), Query Frame = 1
Query:  511 RLHPGGIRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEGE-NTNGEATVAAEGAELPARERDGTSVGHLVEDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVL----ADKPVTAVSFAPDGKTLVAGFVGGGVGFHRTEGLVQFATTECR-RHG 1206
            R H   I  + FS   ++LAT G D    I++V       R V + E   N +  +                     ED P+R   GH   IV  +WS +   LL+AS D TVR WHP D DNC+  F+H   VT+V + P         EE+A        F++GCMD KLR++S+    P+  VL    A   +T V+F P G+   AG   G V F+ ++GL  F   ECR RHG
Sbjct:   64 RHHQNAIWTMKFSCDRKYLATGGEDGVVNIWKV-------RKVTKEEWKENMDVRI--------------------FEDQPVRSYTGHTSHIVDFAWSKNGF-LLSASLDCTVRLWHP-DYDNCLCIFKHKDMVTSVDFYP---------EEEA-------YFISGCMDRKLRVWSI----PQGCVLKWTQAPSVITTVTFCPGGRLCAAGLSDGQVIFYYSDGLRYFTQMECRNRHG 252          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A6A6NN93_9PEZI (WD40-repeat-containing domain protein n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6NN93_9PEZI)

HSP 1 Score: 97.4 bits (241), Expect = 3.580e-17
Identity = 84/262 (32.06%), Postives = 121/262 (46.18%), Query Frame = 1
Query:  397 RSNGSIARSNSGASSTLVGASTVDGFRLSNINSTQILPRLHPGG----IRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEGENTNGEATVAAEGAELPARERDGTSVGHLVEDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRTEGL 1170
            R +GS++   S   +T   +STV+    S   ST   P L+  G    I A+ FS  G++LA  G D    + RV   +   +     E      T  +EG  L  +         + +    RV +GH G+I+ LSWS ++  LL++S D TVR WH    + C+  F+H   V ++ + P                   R FL G  D KLRL+S+ D          + +TAVSF PDGKT +AG +GG   F+ TEGL
Sbjct:  172 RGSGSVSARTSVGGTTSKRSSTVEVGAPSVTGSTMPSPGLYRTGGSDQIWAMEFSKDGKYLAAGGQDK---LVRVWAVISSPQERRAHEKAEEAETGLSEGRGLRLK-------APVFQKKTFRVYEGHEGKILDLSWSKNNF-LLSSSLDKTVRLWHVSRPE-CLCTFKHSEFVPSIQFHPRDD----------------RFFLAGSFDYKLRLWSIPDKSVAFWNQLPESITAVSFTPDGKTAIAGTMGGLCMFYDTEGL 405          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A6A6ZYD9_9PLEO (WD40 repeat-like protein n=1 Tax=Ophiobolus disseminans TaxID=1469910 RepID=A0A6A6ZYD9_9PLEO)

HSP 1 Score: 87.8 bits (216), Expect = 3.440e-14
Identity = 69/214 (32.24%), Postives = 99/214 (46.26%), Query Frame = 1
Query:  529 IRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEGENTNGEATVAAEGAELPARERDGTSVGHLVEDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRTEGL 1170
            I A+ FS  G +LA  G D    ++ V        +  E    + +A V    +E  A+         + +    R   GH   I+ LSWS ++  LL++S D TVR WH    +N +  F+H   V ++ + P+                  R FL G +DAKLRL+S+ D     SV     +TAVSF PDGKT +AG +GG   F+ TE L
Sbjct:  238 IWAVEFSKDGRYLAAGGQDRVIRVWVVI-------SSAEDRRWHEQAEVDPTTSEGEAQYLSAP----VFQQKIFREYHGHGATILDLSWSKNNF-LLSSSMDKTVRLWHASRDEN-LCIFKHSDFVPSIQFHPTDD----------------RFFLAGSLDAKLRLWSIPDKNVAFSVTVPDMITAVSFTPDGKTCIAGTLGGLCMFYDTEKL 422          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A072P677_9EURO (Uncharacterized protein n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072P677_9EURO)

HSP 1 Score: 84.7 bits (208), Expect = 2.940e-13
Identity = 69/214 (32.24%), Postives = 97/214 (45.33%), Query Frame = 1
Query:  529 IRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEGENTNGEATVAAEGAELPARERDGTSVGHLVEDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRTEGL 1170
            I A+ FS  G +LA AG D +  ++ V           + E    E   A E  +L A          + +    R   GH   I+ LSWS ++  LL++S D TVR  H    + C+ AF+H   VT++ + P                   R FL G +D+KLRL+S+ D            VTAV+F PDGKT +AG +GG    + TEGL
Sbjct:  109 IWAMEFSKDGRYLAAAGQDKKLRVWEVLATT----EDRDVEERLFETNNAGESVKLNAP---------VFKTKLFREYDGHTASILDLSWSKNNF-LLSSSMDKTVRLHHVSRAE-CLCAFKHVDFVTSIQFHPRDD----------------RFFLAGSLDSKLRLWSIPDKTVAYWAQVPDMVTAVAFTPDGKTAIAGCLGGLCILYDTEGL 291          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A5J5A0P4_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5A0P4_9ASTE)

HSP 1 Score: 84.7 bits (208), Expect = 3.120e-13
Identity = 67/243 (27.57%), Postives = 106/243 (43.62%), Query Frame = 1
Query:  517 HPGGIRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLE-GENTNGEATVAAEGAELPAR-------------------ERDGTSVGHLV--------EDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRT 1161
            H G I  I FS  G++LATAG D    +++V      G  +++  E+ N    + A G+  P                      R   SV H+V         + PI   QGH+ +++ LSWS     LL++S D TVR WH     +C++ F H   VT + ++P                   R F++G +DAK+R++S+ D +  +     + VTA  + PDG+  + G   G    + T
Sbjct:  443 HSGSIWTIKFSLDGKYLATAGEDCVIQVWQVVESERKGDLLMDKSEDGNLNLLILANGSPEPTSMSPNLDSHLEKKRKGRSSISRKSVSVDHVVVPETVFALSEKPICSFQGHLDDVLDLSWSKSQ-QLLSSSMDKTVRLWH-LSSKSCLKIFSHSDYVTCIQFNPVDD----------------RYFISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCRLYNT 667          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A1D6IU83_MAIZE (Transducin/WD40 repeat-like superfamily protein n=4 Tax=Zea mays TaxID=4577 RepID=A0A1D6IU83_MAIZE)

HSP 1 Score: 83.6 bits (205), Expect = 6.990e-13
Identity = 68/242 (28.10%), Postives = 107/242 (44.21%), Query Frame = 1
Query:  517 HPGGIRAISFSPSGEFLATAGADHRCFIFRV-------CGHLGGGRT------VLEGENTNGEATVAAEGAELPARERDGTSVG------HLV--------EDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRT 1161
            H G I +I FS  G  LA+AG D    +++V       C     G++         G      +T     A +P +   G S G      HLV         + P  VL+GH  +++ L+WS  D  LL++S D TVR W  +    C++ F H   VT + ++P                   R F++G +DAK+RL+S+ D +  +    ++ VTA S+ PDG+  + G   G    ++T
Sbjct:  415 HEGSIWSIKFSADGRRLASAGEDSVVRVWQVVETSAPPCSLAMDGKSGPLAPLPSPGAADGASSTTTPALASMPKKPAKGKSGGRDALPEHLVVPDKVFALAEQPACVLEGHQDDVLDLTWSKSD-QLLSSSMDKTVRLWDTES-QACLKTFAHSDYVTCIQFNPVDD----------------RYFISGSLDAKVRLWSIPDRQVVDWTDLNEMVTAASYTPDGQGAIIGSHKGSCRLYKT 638          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A6J1AN15_9ROSI (LOW QUALITY PROTEIN: WD repeat-containing protein 44 n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1AN15_9ROSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.180e-13
Identity = 67/243 (27.57%), Postives = 111/243 (45.68%), Query Frame = 1
Query:  517 HPGGIRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEGE-----------NTNGEATVAAEGAEL-PARERDGTS--------VGHLV--------EDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRT 1161
            H G I +I FS  G++LA+AG D    +++V      G+ ++E             N + E T+ +  A+  P ++R G S        + H+V         D P+   QGH+ +++ LSWS     LL++S D TVR W   +   C+R F H   VT + ++P                   R F++G +DAK+R++S+ D +  +     + VTA  + PDG+  + G   G    + T
Sbjct:  452 HNGSIWSIKFSLDGKYLASAGEDCVILVWKVVESERKGQLLMEKPEDGNLNFLLVANGSPEPTLLSPSADHHPEKKRRGRSSISRKSLSLDHIVVPETVFALSDKPVCSFQGHLDDVLDLSWSKSQ-QLLSSSMDKTVRLWD-LNSKTCLRIFSHSDYVTCIQFNPVDD----------------RYFISGSLDAKVRIWSIPDRQVVDWNDLHEMVTAACYTPDGQGALVGSYKGSCRLYNT 676          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A6G1GBV5_9PEZI (WD40 repeat-like protein (Fragment) n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1GBV5_9PEZI)

HSP 1 Score: 82.4 bits (202), Expect = 9.200e-13
Identity = 58/212 (27.36%), Postives = 93/212 (43.87%), Query Frame = 1
Query:  535 AISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEGENTNGEATVAAEGAELPARERDGTSVGHLVEDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRTEGL 1170
            A+ FS  G++LA AG D    ++ V       R   +  +  G    +      P           +    P R+ +GH   ++ LSWS ++  LL++S D TVR WH    + C+  F+H   V ++ + P                   R FL G +D K   +S+ D          + +TAV+F PDGK+ +AG +GG + F+ T+ L
Sbjct:  113 ALEFSKDGKYLAAAGHDKTVRVWAVISSPEERRDFEDAGSPQGGQGASPSPLRAP-----------VFHPTPFRLYEGHESTVIDLSWSKNNF-LLSSSFDKTVRLWHISRNE-CLCTFKHAEYVPSIQFHPRDD----------------RFFLAGSLDLKXXXWSIPDKSVAFWAQLPEMITAVAFTPDGKSCIAGTLGGQLHFYETDNL 295          
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Match: A0A1S3BUQ6_CUCME (WD repeat-containing protein 44 isoform X1 n=6 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3BUQ6_CUCME)

HSP 1 Score: 83.2 bits (204), Expect = 9.470e-13
Identity = 66/232 (28.45%), Postives = 102/232 (43.97%), Query Frame = 1
Query:  517 HPGGIRAISFSPSGEFLATAGADHRCFIFRVCGHLGGGRTVLEG-ENTNGEATVAAEGAELPAR-------------------ERDGTSVGHLV--------EDHPIRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHGGRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPEPEESVLADKPVTAVSFAPDGKTLVAG 1128
            H G I  I FS  G++LA+AG D    +++V      G  ++E  E+ N     AA  +  PA                     R   S+ H++         + PI   QGH+  ++ LSWS     LL++S D TVR WH    D C++ F H   VT + ++P                   R F++G +DAK+R++S+ D +  +     + VTA  + PDGK  + G
Sbjct:  434 HSGSIWTIKFSLDGKYLASAGEDRIIHVWQVVESEKKGDLLMEKPEDGNLSFLFAANESPEPASLSPNVDNHHEKKRRGRSSISRKSVSLEHVIVPDTVFGLSEKPICSFQGHLDVVLDLSWSKSQ-HLLSSSMDKTVRLWH-LSRDTCLKIFSHSDYVTCIQFNPIDD----------------RYFISGSLDAKVRIWSIPDHQVVDWSDLHEMVTAACYTPDGKGALVG 647          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7408.15101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVB5_ECTSI9.130e-15944.55Protein phosphatase type 2A regulator/ signal tran... [more]
A0A196S6S1_BLAHN7.680e-1934.45Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
A0A6A6NN93_9PEZI3.580e-1732.06WD40-repeat-containing domain protein n=1 Tax=Line... [more]
A0A6A6ZYD9_9PLEO3.440e-1432.24WD40 repeat-like protein n=1 Tax=Ophiobolus dissem... [more]
A0A072P677_9EURO2.940e-1332.24Uncharacterized protein n=1 Tax=Exophiala aquamari... [more]
A0A5J5A0P4_9ASTE3.120e-1327.57Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A1D6IU83_MAIZE6.990e-1328.10Transducin/WD40 repeat-like superfamily protein n=... [more]
A0A6J1AN15_9ROSI8.180e-1327.57LOW QUALITY PROTEIN: WD repeat-containing protein ... [more]
A0A6G1GBV5_9PEZI9.200e-1327.36WD40 repeat-like protein (Fragment) n=1 Tax=Eremom... [more]
A0A1S3BUQ6_CUCME9.470e-1328.45WD repeat-containing protein 44 isoform X1 n=6 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7408contigH-elongata_contig7408:7793..9871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score490.3
Seed ortholog evalue1.4e-135
Seed eggNOG ortholog2880.D7FVB5
Preferred nameWDR44
KEGG koko:K20241
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005874,GO:0008150,GO:0010008,GO:0012505,GO:0015630,GO:0016020,GO:0017016,GO:0017137,GO:0019899,GO:0030334,GO:0031090,GO:0031267,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032991,GO:0040012,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0050789,GO:0050794,GO:0051020,GO:0051270,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:2000145
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG0283@1,KOG0283@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-14_000490.1
Exons2
Model size2046
Cds size2046
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.9256382-CDS-H-elongata_contig7408:7792..83251622931145.9256382-CDS-H-elongata_contig7408:7792..8325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 7793..8325 -
1691679717.3243709-CDS-H-elongata_contig7408:7792..83251691679717.3243709-CDS-H-elongata_contig7408:7792..8325Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 7793..8325 -
1622931145.943561-CDS-H-elongata_contig7408:8358..98711622931145.943561-CDS-H-elongata_contig7408:8358..9871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 8359..9871 -
1691679717.3373497-CDS-H-elongata_contig7408:8358..98711691679717.3373497-CDS-H-elongata_contig7408:8358..9871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7408 8359..9871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7408.15101.1prot_H-elongata_contig7408.15101.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7408 7793..9871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7408.15101.1

>prot_H-elongata_contig7408.15101.1 ID=prot_H-elongata_contig7408.15101.1|Name=mRNA_H-elongata_contig7408.15101.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=682bp
MGTGGLRADSKAVEEAVTNPSNWLLRNRHTGQEVEAQTFVRSVVHHTARR
PPQPVGPLLGWMARRNRNTGNVAVGRLRPTLLPPSNDAITSDDHTHGAPL
SPPGRPHTSRAISKSPACVRGKSSLLPYPSNARSNGSIARSNSGASSTLV
GASTVDGFRLSNINSTQILPRLHPGGIRAISFSPSGEFLATAGADHRCFI
FRVCGHLGGGRTVLEGENTNGEATVAAEGAELPARERDGTSVGHLVEDHP
IRVLQGHVGEIVCLSWSPDDLALLTASADGTVRCWHPQDGDNCMRAFEHG
GRVTAVAWDPSSTLNATSGEEDAGEEGTGRRFLTGCMDAKLRLFSVDDPE
PEESVLADKPVTAVSFAPDGKTLVAGFVGGGVGFHRTEGLVQFATTECRR
HGIRHSAAQHALQVASPVRRLSSSAGGPAAAGRARSRERGRRGTMGVSVG
RGTSGGAEERVTGLCFRPQRKRSSELANGWNFKPERDDDHSRSGSVDALC
GQIGHDSTEARAPRAGANGGRPAAVAEAEGNGGEPHPRAGPTVDVLVSTN
NSRTRVLVAEDGGAVTVAAKLKGHNTDGVLGRHAVAHFSEDGELVISGST
DGSVHVWPTPDAEASAKTSSRRGPARLGWGEGHERAQICEKSVAVPVALF
APDAVARSIGGESSRIIVTGDDNGSLKVFIG*
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mRNA from alignment at H-elongata_contig7408:7793..9871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7408.15101.1 ID=mRNA_H-elongata_contig7408.15101.1|Name=mRNA_H-elongata_contig7408.15101.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2079bp|location=Sequence derived from alignment at H-elongata_contig7408:7793..9871- (Himanthalia elongata Himel1 dioecious)
ATGGGGACTGGAGGGTTGCGCGCGGACTCAAAAGCCGTGGAAGAGGCGGT CACAAACCCGTCGAACTGGTTGCTGCGGAACCGTCACACAGGTCAGGAGG TGGAAGCGCAAACGTTCGTGCGATCCGTCGTGCACCATACCGCGCGCCGC CCGCCGCAGCCCGTGGGCCCCCTGTTGGGGTGGATGGCAAGGCGAAATCG AAACACCGGGAACGTGGCGGTCGGCCGCCTGAGGCCGACGCTCCTCCCTC CCAGCAATGATGCCATCACGTCGGACGACCACACCCACGGCGCCCCTCTG AGCCCGCCAGGCCGTCCGCATACCTCCCGAGCGATAAGCAAGTCGCCCGC CTGCGTTCGCGGTAAATCGTCGCTTCTTCCATATCCCTCCAACGCCCGCA GCAACGGCTCCATTGCGAGGAGCAACAGCGGTGCAAGCAGCACGTTAGTT GGTGCCAGCACCGTGGATGGGTTCAGGTTGAGCAATATAAACTCAACTCA GATCTTGCCGAGGCTCCACCCAGGGGGCATTCGCGCGATATCATTTAGCC CTTCGGGAGAGTTTCTCGCCACGGCTGGGGCTGATCACCGCTGCTTTATA TTCCGCGTGTGTGGACACCTTGGCGGTGGACGCACGGTTCTGGAAGGGGA GAACACCAACGGGGAAGCGACTGTTGCGGCGGAGGGAGCCGAGCTTCCGG CGAGGGAGCGGGACGGAACGTCCGTAGGGCATCTGGTCGAAGACCACCCG ATCAGAGTTCTGCAAGGCCACGTGGGGGAGATCGTGTGCTTGAGTTGGTC TCCGGACGACCTCGCTTTATTGACCGCTTCGGCCGACGGGACTGTGCGCT GCTGGCATCCCCAGGATGGAGATAATTGCATGCGTGCGTTTGAGCATGGT GGCAGGGTGACTGCCGTAGCGTGGGACCCTTCGTCGACGTTGAACGCCAC CTCCGGGGAAGAAGATGCAGGTGAAGAAGGGACGGGGCGGCGGTTCCTGA CGGGCTGCATGGACGCGAAGCTCCGACTCTTTTCTGTGGACGACCCGGAG CCCGAGGAGTCGGTGTTAGCCGATAAGCCCGTGACCGCGGTGTCTTTCGC CCCAGACGGGAAGACGTTGGTAGCCGGCTTTGTCGGTGGGGGCGTCGGCT TCCACCGGACGGAGGGACTGGTCCAGTTCGCCACGACCGAGTGCCGGAGA CACGGGATCAGGCACTCGGCTGCACAGCACGCACTCCAGGTGGCGAGCCC AGTGAGACGCCTCTCCTCGAGTGCAGGCGGCCCCGCTGCCGCTGGCCGTG CCAGAAGCAGGGAAAGGGGTCGACGGGGCACGATGGGGGTCTCAGTGGGC CGGGGAACTTCGGGCGGTGCCGAGGAGAGAGTGACAGGACTGTGCTTCCG CCCTCAGCGGAAACGCTCGTCTGAGCTTGCAAACGGTTGGAACTTTAAGC CCGAACGGGATGATGATCACTCTCGGAGCGGCAGCGTGGACGCGCTGTGC GGGCAAATCGGTCGTCCGGCGGGCCTTATCGTGGAAACCAACACAGATGA CTCGACGGAAGCGCGCGCCCCACGCGCTGGCGCGAACGGCGGCCGACCGG CTGCAGTGGCGGAGGCGGAAGGGAACGGTGGTGAGCCGCATCCCAGGGCC GGCCCAACGGTTGACGTCCTCGTGAGTACCAACAACTCCCGAACGCGGGT GCTCGTGGCGGAGGACGGTGGTGCCGTGACTGTCGCGGCAAAGCTGAAGG GGCACAACACGGACGGGGTCCTCGGGCGGCACGCAGTTGCCCATTTCAGT GAGGACGGCGAGCTCGTGATCAGTGGGTCAACGGACGGCAGCGTCCACGT ATGGCCCACCCCGGACGCCGAGGCCAGCGCGAAGACGTCCTCGAGGCGAG GGCCCGCGAGGTTGGGCTGGGGGGAGGGACACGAGCGGGCTCAGATTTGC GAGAAGTCTGTGGCCGTACCGGTCGCCCTGTTCGCTCCCGATGCCGTCGC CAGGAGCATCGGCGGAGAGTCAAGCCGCATCATCGTGACGGGAGACGACA ATGGGTCCTTGAAGGTGTTCATTGGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig7408:7793..9871-

>mRNA_H-elongata_contig7408.15101.1 ID=mRNA_H-elongata_contig7408.15101.1|Name=mRNA_H-elongata_contig7408.15101.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4092bp|location=Sequence derived from alignment at H-elongata_contig7408:7793..9871- (Himanthalia elongata Himel1 dioecious)
ATGGGGACTGGAGGGTTGCGCGCGGACTCAAAAGCCGTGGAAGAGGCGGT
CACAAACCCGTCGAACTGGTTGCTGCGGAACCGTCACACAGGTCAGGAGG
TGGAAGCGCAAACGTTCGTGCGATCCGTCGTGCACCATACCGCGCGCCGC
CCGCCGCAGCCCGTGGGCCCCCTGTTGGGGTGGATGGCAAGGCGAAATCG
AAACACCGGGAACGTGGCGGTCGGCCGCCTGAGGCCGACGCTCCTCCCTC
CCAGCAATGATGCCATCACGTCGGACGACCACACCCACGGCGCCCCTCTG
AGCCCGCCAGGCCGTCCGCATACCTCCCGAGCGATAAGCAAGTCGCCCGC
CTGCGTTCGCGGTAAATCGTCGCTTCTTCCATATCCCTCCAACGCCCGCA
GCAACGGCTCCATTGCGAGGAGCAACAGCGGTGCAAGCAGCACGTTAGTT
GGTGCCAGCACCGTGGATGGGTTCAGGTTGAGCAATATAAACTCAACTCA
GATCTTGCCGAGGCTCCACCCAGGGGGCATTCGCGCGATATCATTTAGCC
CTTCGGGAGAGTTTCTCGCCACGGCTGGGGCTGATCACCGCTGCTTTATA
TTCCGCGTGTGTGGACACCTTGGCGGTGGACGCACGGTTCTGGAAGGGGA
GAACACCAACGGGGAAGCGACTGTTGCGGCGGAGGGAGCCGAGCTTCCGG
CGAGGGAGCGGGACGGAACGTCCGTAGGGCATCTGGTCGAAGACCACCCG
ATCAGAGTTCTGCAAGGCCACGTGGGGGAGATCGTGTGCTTGAGTTGGTC
TCCGGACGACCTCGCTTTATTGACCGCTTCGGCCGACGGGACTGTGCGCT
GCTGGCATCCCCAGGATGGAGATAATTGCATGCGTGCGTTTGAGCATGGT
GGCAGGGTGACTGCCGTAGCGTGGGACCCTTCGTCGACGTTGAACGCCAC
CTCCGGGGAAGAAGATGCAGGTGAAGAAGGGACGGGGCGGCGGTTCCTGA
CGGGCTGCATGGACGCGAAGCTCCGACTCTTTTCTGTGGACGACCCGGAG
CCCGAGGAGTCGGTGTTAGCCGATAAGCCCGTGACCGCGGTGTCTTTCGC
CCCAGACGGGAAGACGTTGGTAGCCGGCTTTGTCGGTGGGGGCGTCGGCT
TCCACCGGACGGAGGGACTGGTCCAGTTCGCCACGACCGAGTGCCGGAGA
CACGGGATCAGGCACTCGGCTGCACAGCACGCACTCCAGGTGGCGAGCCC
AGTGAGACGCCTCTCCTCGAGTGCAGGCGGCCCCGCTGCCGCTGGCCGTG
CCAGAAGCAGGGAAAGGGGTCGACGGGGCACGATGGGGGTCTCAGTGGGC
CGGGGAACTTCGGGCGGTGCCGAGGAGAGAGTGACAGGACTGTGCTTCCG
CCCTCAGCGGAAACGCTCGTCTGAGCTTGCAAACGGTTGGAACTTTAAGC
CCGAACGGGATGATGATCACTCTCGGAGCGGCAGCGTGGACGCGCTGTGC
GGGCAAATCGGTCATGGGGACTGGAGGGTTGCGCGCGGACTCAAAAGCCG
TGGAAGAGGCGGTCACAAACCCGTCGAACTGGTTGCTGCGGAACCGTCAC
ACAGGTCAGGAGGTGGAAGCGCAAACGTTCGTGCGATCCGTCGTGCACCA
TACCGCGCGCCGCCCGCCGCAGCCCGTGGGCCCCCTGTTGGGGTGGATGG
CAAGGCGAAATCGAAACACCGGGAACGTGGCGGTCGGCCGCCTGAGGCCG
ACGCTCCTCCCTCCCAGCAATGATGCCATCACGTCGGACGACCACACCCA
CGGCGCCCCTCTGAGCCCGCCAGGCCGTCCGCATACCTCCCGAGCGATAA
GCAAGTCGCCCGCCTGCGTTCGCGGTAAATCGTCGCTTCTTCCATATCCC
TCCAACGCCCGCAGCAACGGCTCCATTGCGAGGAGCAACAGCGGTGCAAG
CAGCACGTTAGTTGGTGCCAGCACCGTGGATGGGTTCAGGTTGAGCAATA
TAAACTCAACTCAGATCTTGCCGAGGCTCCACCCAGGGGGCATTCGCGCG
ATATCATTTAGCCCTTCGGGAGAGTTTCTCGCCACGGCTGGGGCTGATCA
CCGCTGCTTTATATTCCGCGTGTGTGGACACCTTGGCGGTGGACGCACGG
TTCTGGAAGGGGAGAACACCAACGGGGAAGCGACTGTTGCGGCGGAGGGA
GCCGAGCTTCCGGCGAGGGAGCGGGACGGAACGTCCGTAGGGCATCTGGT
CGAAGACCACCCGATCAGAGTTCTGCAAGGCCACGTGGGGGAGATCGTGT
GCTTGAGTTGGTCTCCGGACGACCTCGCTTTATTGACCGCTTCGGCCGAC
GGGACTGTGCGCTGCTGGCATCCCCAGGATGGAGATAATTGCATGCGTGC
GTTTGAGCATGGTGGCAGGGTGACTGCCGTAGCGTGGGACCCTTCGTCGA
CGTTGAACGCCACCTCCGGGGAAGAAGATGCAGGTGAAGAAGGGACGGGG
CGGCGGTTCCTGACGGGCTGCATGGACGCGAAGCTCCGACTCTTTTCTGT
GGACGACCCGGAGCCCGAGGAGTCGGTGTTAGCCGATAAGCCCGTGACCG
CGGTGTCTTTCGCCCCAGACGGGAAGACGTTGGTAGCCGGCTTTGTCGGT
GGGGGCGTCGGCTTCCACCGGACGGAGGGACTGGTCCAGTTCGCCACGAC
CGAGTGCCGGAGACACGGGATCAGGCACTCGGCTGCACAGCACGCACTCC
AGGTGGCGAGCCCAGTGAGACGCCTCTCCTCGAGTGCAGGCGGCCCCGCT
GCCGCTGGCCGTGCCAGAAGCAGGGAAAGGGGTCGACGGGGCACGATGGG
GGTCTCAGTGGGCCGGGGAACTTCGGGCGGTGCCGAGGAGAGAGTGACAG
GACTGTGCTTCCGCCCTCAGCGGAAACGCTCGTCTGAGCTTGCAAACGGT
TGGAACTTTAAGCCCGAACGGGATGATGATCACTCTCGGAGCGGCAGCGT
GGACGCGCTGTGCGGGCAAATCGGTCATGACTCGACGGAAGCGCGCGCCC
CACGCGCTGGCGCGAACGGCGGCCGACCGGCTGCAGTGGCGGAGGCGGAA
GGGAACGGTGGTGAGCCGCATCCCAGGGCCGGCCCAACGGTTGACGTCCT
CGTGAGTACCAACAACTCCCGAACGCGGGTGCTCGTGGCGGAGGACGGTG
GTGCCGTGACTGTCGCGGCAAAGCTGAAGGGGCACAACACGGACGGGGTC
CTCGGGCGGCACGCAGTTGCCCATTTCAGTGAGGACGGCGAGCTCGTGAT
CAGTGGGTCAACGGACGGCAGCGTCCACGTATGGCCCACCCCGGACGCCG
AGGCCAGCGCGAAGACGTCCTCGAGGCGAGGGCCCGCGAGGTTGGGCTGG
GGGGAGGGACACGAGCGGGCTCAGATTTGCGAGAAGTCTGTGGCCGTACC
GGTCGCCCTGTTCGCTCCCGATGCCGTCGCCAGGAGCATCGGCGGAGAGT
CAAGCCGCATCATCGTGACGGGAGACGACAATGGGTCCTTGAAGGTGTTC
ATTGGCTGAATGACTCGACGGAAGCGCGCGCCCCACGCGCTGGCGCGAAC
GGCGGCCGACCGGCTGCAGTGGCGGAGGCGGAAGGGAACGGTGGTGAGCC
GCATCCCAGGGCCGGCCCAACGGTTGACGTCCTCGTGAGTACCAACAACT
CCCGAACGCGGGTGCTCGTGGCGGAGGACGGTGGTGCCGTGACTGTCGCG
GCAAAGCTGAAGGGGCACAACACGGACGGGGTCCTCGGGCGGCACGCAGT
TGCCCATTTCAGTGAGGACGGCGAGCTCGTGATCAGTGGGTCAACGGACG
GCAGCGTCCACGTATGGCCCACCCCGGACGCCGAGGCCAGCGCGAAGACG
TCCTCGAGGCGAGGGCCCGCGAGGTTGGGCTGGGGGGAGGGACACGAGCG
GGCTCAGATTTGCGAGAAGTCTGTGGCCGTACCGGTCGCCCTGTTCGCTC
CCGATGCCGTCGCCAGGAGCATCGGCGGAGAGTCAAGCCGCATCATCGTG
ACGGGAGACGACAATGGGTCCTTGAAGGTGTTCATTGGCTGA
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