mRNA_H-elongata_contig74077.15099.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74077.15099.1
Unique NamemRNA_H-elongata_contig74077.15099.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig74077.15099.1 vs. uniprot
Match: D8LSP7_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP7_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.360e-18
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    7 QVYHSEATPNPYGGLPVRPEKLKLQFQDARSLQKKALSAIPNLVTMADLREDAS----SLREALAES-AEARYAAVLVTNSG 237
            +V+HSE+TPNPYGGLPVRPE++   FQDARSLQKK LSAIP+ V   DL + +S    SL+EALAE   E  +AA+L T +G
Sbjct:  126 KVHHSESTPNPYGGLPVRPEEMLTMFQDARSLQKKVLSAIPDSVVSVDLEKSSSGPSTSLKEALAEGDGEEAFAAILFTEAG 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74077.15099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSP7_ECTSI1.360e-1859.76Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74077contigH-elongata_contig74077:492..1540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-15_003070.1
Hectar predicted targeting categoryother localisation
Exons3
Model size240
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74077.15099.1prot_H-elongata_contig74077.15099.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74077 492..1540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.722997-CDS-H-elongata_contig74077:491..5591622931145.722997-CDS-H-elongata_contig74077:491..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74077 492..559 +
1691679717.2173972-CDS-H-elongata_contig74077:491..5591691679717.2173972-CDS-H-elongata_contig74077:491..559Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74077 492..559 +
1622931145.7348592-CDS-H-elongata_contig74077:688..7041622931145.7348592-CDS-H-elongata_contig74077:688..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74077 689..704 +
1691679717.2288098-CDS-H-elongata_contig74077:688..7041691679717.2288098-CDS-H-elongata_contig74077:688..704Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74077 689..704 +
1622931145.7495437-CDS-H-elongata_contig74077:1384..15401622931145.7495437-CDS-H-elongata_contig74077:1384..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74077 1385..1540 +
1691679717.2405837-CDS-H-elongata_contig74077:1384..15401691679717.2405837-CDS-H-elongata_contig74077:1384..1540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74077 1385..1540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74077.15099.1

>prot_H-elongata_contig74077.15099.1 ID=prot_H-elongata_contig74077.15099.1|Name=mRNA_H-elongata_contig74077.15099.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
VVQVYHSEATPNPYGGLPVRPEKLKLQFQDARSLQKKALSAIPNLVTMAD
LREDASSLREALAESAEARYAAVLVTNSG*
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mRNA from alignment at H-elongata_contig74077:492..1540+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74077.15099.1 ID=mRNA_H-elongata_contig74077.15099.1|Name=mRNA_H-elongata_contig74077.15099.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1049bp|location=Sequence derived from alignment at H-elongata_contig74077:492..1540+ (Himanthalia elongata Himel1 dioecious)
GTCGTACAGGTGTATCACTCGGAGGCCACCCCCAACCCTTACGGTGGCCT
ACCCGTTCGGCCGGAGAAGTTCATCGATAGCTTCCAGGCACGACATGGTG
CATAACCAGCTAAAGCCACCGTCTTGTAGCCTAGGCTCTATCCATATTTA
ACCTTAGTTGGTAGTCAGCCCCGCGCGGTCCATGAAAGTCTATGAAGGCT
GAAGTTACAATTTGTTCAGTTTTCTCTCTTTTTACTCTTTCATCGTTTTT
TCTCTCTTTTTTTCTCTCTTTTTACTTTTTTATATCAATCTTTTTTTGCC
TCTTTTTGTATCATAAAAAAAAATCATTTCTTTTCTTTTTCTTCTTTTTT
TTTAGTGTGATGGTTCACACTTTCGTAATTTGATCAACAAAAGATAATCA
ATATTGGGTTGCTTTCGATCTCCAGTGAGCGTAGACAGCACCTCCAAGGT
GTGTTTTTTTCGTGACGCTTTAATATATTTATATTTTTCGTGGAATACAT
TTTCCGGTACAAGTACAATATATATTTCCGTCTCTTGCCGAGGTGTATTG
TAGCTGTTGGCTCCCTGGACTTCACCTCTCAGTGTCTAAAGAAGATGTTG
ATGTTCAAAGGGTTTGAATGAATTCATATGTTTGAAAAAGAAAAAAGCTC
CCTTCCCTGCCTGCCCCTCTTTCTCTCTATGAAAACCCATACGAGAAAGG
GACTGAAACACGGAATAAAGAACTCACTAAAAAACTTAATAGAATATCCC
CCTGTCCCCTTCCCCGAAAAGCCAAACTCATTTTATGTGGGGTGCGAGTA
CGAGTGCAAGCAGCGGTAGAAATATATTTTGGTTTAGCTTCTTTTCTTTT
CTAGTTAATATCGTCGCTCTCTTGTCCTGTTGTTATTGTAAAGCAGGACG
CGCGGTCCTTGCAGAAAAAGGCGCTGTCCGCGATCCCTAACCTGGTGACA
ATGGCCGACCTCCGGGAAGATGCATCCTCGCTCCGGGAGGCCTTGGCCGA
GAGTGCCGAAGCTAGATACGCCGCAGTGCTGGTGACCAACAGTGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig74077:492..1540+

>mRNA_H-elongata_contig74077.15099.1 ID=mRNA_H-elongata_contig74077.15099.1|Name=mRNA_H-elongata_contig74077.15099.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig74077:492..1540+ (Himanthalia elongata Himel1 dioecious)
GTCGTACAGGTGTATCACTCGGAGGCCACCCCCAACCCTTACGGTGGCCT
ACCCGTTCGGCCGGAGAAGTCGTACAGGTGTATCACTCGGAGGCCACCCC
CAACCCTTACGGTGGCCTACCCGTTCGGCCGGAGAAGCTGAAGTTACAAT
TTGCTGAAGTTACAATTTCAGGACGCGCGGTCCTTGCAGAAAAAGGCGCT
GTCCGCGATCCCTAACCTGGTGACAATGGCCGACCTCCGGGAAGATGCAT
CCTCGCTCCGGGAGGCCTTGGCCGAGAGTGCCGAAGCTAGATACGCCGCA
GTGCTGGTGACCAACAGTGGGTAACAGGACGCGCGGTCCTTGCAGAAAAA
GGCGCTGTCCGCGATCCCTAACCTGGTGACAATGGCCGACCTCCGGGAAG
ATGCATCCTCGCTCCGGGAGGCCTTGGCCGAGAGTGCCGAAGCTAGATAC
GCCGCAGTGCTGGTGACCAACAGTGGGTAA
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