mRNA_H-elongata_contig74065.15098.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74065.15098.1
Unique NamemRNA_H-elongata_contig74065.15098.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig74065.15098.1 vs. uniprot
Match: D8LGE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE3_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 2.760e-63
Identity = 142/264 (53.79%), Postives = 170/264 (64.39%), Query Frame = 1 
Query:    1 NNAEVVPFFLAGLCHPSVDVKALTVKALVTL-------------------GREQTPVREERCRALLQPPLLPALVALLGDEDTRAAQDAADALVTLCDTVSFETAATLEPSTAMAIEAACRRGVMAALSSQLDEVVDGLTDRQASTPRLRFADTAARWLMSASESAFEAAVETASVLLVTNLTQDSSDPLLQLNALELLEQ-ARH*TGVRYLIANSHVSGLLSAAGGGGESEGESSSTLDPLLGTSALRTLAIIFAKAAGMGLN 732
            N  E+V FFLAGLCHP+  V+ LT  A+  L                   GRE    R ERCR LLQPPLLPALVA LGD DT A+Q  AD LV LC+      A T  P+T       CRR VM AL+SQ+ EVV GLT RQA+TP+LRFAD A R LMSAS+SAF AAV+  ++ LVT+LT+D+SD LLQLNAL+LL+Q A    G  +L+AN H+  LL +AGGG   EG+S    DPLLG SALRTLA + A+AA  GL+
Sbjct:  112 NGTELVAFFLAGLCHPAAGVRTLTATAMGALXXXXXXXXXXXXXXXXXXEGRE----RAERCRTLLQPPLLPALVAALGDGDTGASQQVADTLVALCEEADGRAAVT--PTTG-GRATGCRRAVMGALASQIGEVVAGLTARQAATPKLRFADIATR-LMSASDSAFAAAVDAGALSLVTDLTEDASDVLLQLNALDLLDQVASTAGGALHLVANGHLDRLLVSAGGG---EGDSPEAPDPLLGASALRTLAKVLARAADAGLD 364
[Close]
BLAST of mRNA_H-elongata_contig74065.15098.1 vs. uniprot
Match: A0A6H5KYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX7_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.400e-35
Identity = 94/166 (56.63%), Postives = 117/166 (70.48%), Query Frame = 1 
Query:  202 QDAADALVTLCDTVSFETAATLEPSTAMAIEAACRRGVMAALSSQLDEVVDGLTDRQASTPRLRFADTAARWLMSASESAFEAAVETASVLLVTNLTQDSSDPLLQLNALELLEQ-ARH*TGVRYLIANSHVSGLLSAAGGGGESEGESSSTLDPLLGTSALRTLA 696
            Q  AD LV LC+      A T  P+T   +   CRR VM AL+SQ+ EV+ GLT RQA+TP+LRFAD A R LMSAS+SAF AAV++ ++ LVT+LT+D+SD LLQLNAL+LL++ A    G R+L+AN H+  LL AAGGG   EG+S    DPLLG SALRTLA
Sbjct:  111 QQVADTLVALCEEADGRAAVT--PATG-GVATGCRRAVMGALASQIGEVIAGLTARQAATPKLRFADIATR-LMSASDSAFAAAVDSGALALVTDLTEDASDVLLQLNALDLLDRVASTAGGARHLVANGHLDKLLVAAGGG---EGDSPDAPDPLLGASALRTLA 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74065.15098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGE3_ECTSI2.760e-6353.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYX7_9PHAE1.400e-3556.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74065contigH-elongata_contig74065:254..2841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-16_003720.1
Exons4
Model size732
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74065.15098.1prot_H-elongata_contig74065.15098.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74065 1152..2667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.3391404-UTR-H-elongata_contig74065:253..4571622931145.3391404-UTR-H-elongata_contig74065:253..457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74065 254..457 +
1691679717.1495771-UTR-H-elongata_contig74065:253..4571691679717.1495771-UTR-H-elongata_contig74065:253..457Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74065 254..457 +
1622931145.357436-UTR-H-elongata_contig74065:1073..11511622931145.357436-UTR-H-elongata_contig74065:1073..1151Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74065 1074..1151 +
1691679717.158793-UTR-H-elongata_contig74065:1073..11511691679717.158793-UTR-H-elongata_contig74065:1073..1151Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74065 1074..1151 +
1622931145.6849155-UTR-H-elongata_contig74065:2667..28411622931145.6849155-UTR-H-elongata_contig74065:2667..2841Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74065 2668..2841 +
1691679717.2004714-UTR-H-elongata_contig74065:2667..28411691679717.2004714-UTR-H-elongata_contig74065:2667..2841Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74065 2668..2841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.3738117-CDS-H-elongata_contig74065:1151..12851622931145.3738117-CDS-H-elongata_contig74065:1151..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74065 1152..1285 +
1691679717.1704013-CDS-H-elongata_contig74065:1151..12851691679717.1704013-CDS-H-elongata_contig74065:1151..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74065 1152..1285 +
1622931145.3896227-CDS-H-elongata_contig74065:1545..16851622931145.3896227-CDS-H-elongata_contig74065:1545..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74065 1546..1685 +
1691679717.1800792-CDS-H-elongata_contig74065:1545..16851691679717.1800792-CDS-H-elongata_contig74065:1545..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74065 1546..1685 +
1622931145.5000627-CDS-H-elongata_contig74065:2665..26671622931145.5000627-CDS-H-elongata_contig74065:2665..2667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74065 2666..2667 +
1691679717.1891284-CDS-H-elongata_contig74065:2665..26671691679717.1891284-CDS-H-elongata_contig74065:2665..2667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74065 2666..2667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74065.15098.1

>prot_H-elongata_contig74065.15098.1 ID=prot_H-elongata_contig74065.15098.1|Name=mRNA_H-elongata_contig74065.15098.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MAIEAACRRGVMAALSSQLDEVVDGLTDRQASTPRLRFADTAARWLMSAS
ESAFEAAVETASVLLVTNLTQDSSDPLLQLNALELLEQARH*
back to top

mRNA from alignment at H-elongata_contig74065:254..2841+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74065.15098.1 ID=mRNA_H-elongata_contig74065.15098.1|Name=mRNA_H-elongata_contig74065.15098.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2588bp|location=Sequence derived from alignment at H-elongata_contig74065:254..2841+ (Himanthalia elongata Himel1 dioecious)
AACAACGCGGAGGTTGTGCCATTTTTCTTGGCCGGGCTGTGTCATCCTTC
GGTGGACGTTAAGGCTCTGACGGTCAAGGCGCTCGTAACGCTGGGTCGCG
AGCAGACCCCTGTACGAGAGGAACGGTGTCGGGCACTTCTTCAGCCGCCG
CTCCTGCCGGCGTTGGTCGCCCTACTTGGAGATGAGGATACGAGAGCTGC
CCAGGTGAGCTCAGCCTGTTTACGCGCCTCCTCATGGGAGAATCGTCGCT
TTGATATCATTGTCGCAACCACCTGCTCATTTTTTATGTTTGTGTGATTT
CAGCGACAGCGCGAGCTAGGAATGCTTTTCTCCGGGTAGTATTAATCATC
GTTTTTGTGCGAGACGGGGAAAAATCATTTTCACTTTTCAGCTGGTCGTG
AGCAGGATTGGCAACCACATCAGGTCGATCCATACTAAAGACTATATGTT
ATTATCACACACACACACACACTGTTAAATGCATGATTTTGGCAGGCTTC
GAGAGTACTTCGTGCGCCACGCTGTGTGCTTTCCTATTTGTACATGTAAA
TAATCCAGAAAATATGCAGGTGTAGATGAGGGCCGCGAGAGCGCCAAGAG
CAAGGTAGGGCTCTTATGTCGTCATCCGCAGCAGCAGCTGTGTCGTCGTA
CAGTATTGGGGCCTCCAGCAGACTGTCTGCGTTGTCGATTGTAACCTTTG
CGAACAGCTGTACGTGGCCTTTGTCTGCCTGTCATTGTTAGCCGTAACTT
CCCCTCCGTGGCCAGTCATCACAAGGCGGTTTCGTCGCGACGTCGATATT
TATTTCCCTCTGACAAAAAGGATGCCGCGGACGCCTTGGTAACACTGTGC
GACACGGTTTCCTTTGAGACTGCGGCGACGTTAGAGCCATCCACAGCAAT
GGCGATCGAGGCAGCCTGCCGTCGTGGTGTCATGGCAGCCCTCTCTTCGC
AGCTGGACGAGGTTGTCGATGGGCTGACCGACCGCCAAGCGTCAACGCCG
AGGCTACGCTTTGCCGACACGGCCGCAAGGTGGTTAAGGCTAAGATTAGC
CCTCGAAATCTGCTATAGTAGTTCTTATGTTGTGTATGACATTTCCGTAC
TGTACTTATTCGGAAATATCACGACGGCCGACCCTCCCCAAGAGTTAGCG
TAAAGTACCAGTGGTGGCGACCCGTCCGCAGAGAAGAATCATTGACGAAG
GGTTGGATGCACCCCTGCTACTTCTGGAGCCGCTATTTTTAAGCACATAA
TTTGCGCTGTTTGCTGCTCTGGTTGCCTCCTCTCCCCATTAGGTTAATGT
CTGCGTCGGAGTCAGCTTTCGAGGCGGCAGTGGAGACCGCGTCGGTGCTA
TTGGTGACCAATCTCACGCAGGATTCGTCTGATCCTCTACTGCAGCTGAA
CGCACTGGAACTCCTCGAGCAGGCGAGGCACTGTCGCTTAAAACCCTCAT
AGAAACCCCCTCCCCGTGCGCGAGGGAAAATATTATCCTTCATCCCACAT
TATGCCGATTGAGCCGCGATCCATAAATTCGCAGCTGTGGTTCGCTGAAC
AGGAACAGAAATGAAGGAAACTTTGAGAGCACTAGTAAAAAACTCTCTAA
AAAGGTATGCGCACCGAAAGCGCTGGTTCAAAACTATTTTTCTAAGCAAG
TATCTTTGTTACTGTACAAAAATCGGGATTGGCCCGATGGTGGTTTTACG
GTAGAGATGAATGCCGTCGCAGTAAAGGAAAGGATCGCGGGAGCACCTAC
CATATTCTGCCTGGGTTGAGAGAATGAGCAGGCTGGCGCGACACGGGAGA
GCCGAACCCGTCTCGCGAGACCAAATTCTCAGTCACGAACAGGGACAGAG
AAAATAATTTTCCCTGCTCAGCTGACCTCAAGCAGGAGGCAACCAAATCC
GGTTGATCCTTACTCTGATATATGTGATGACATCACACACACACGCACTT
CATTAGGGCGGGAGGGTACGAGAAGGCAAGGAAATGCTTACCGCGTACCT
CCTTCGCATCTTTTTTCTGTAACGCCGATGGATTGCTTGACTCGAAAAAC
TACTTTTTAAAAACGTTTTTGACCAGAACCTTCCATCGTTGCACTGTTTG
GTACAGCATGTAGTGAAAATTGGGTAGTCATGGAAACCATTAGGAGCTGG
AGAGATGAAGGGGAAGGTGGTGGATATTTACCCCGGTGGGGGTTCTTCGG
AGGTTTCGGTACTGCATGTTAGAGCTAGAGCTAGAGCTAGAGTTACTTTC
GCTAATGCGGACATCATGCATATCGAGAGATGCTTTCGGTCGGCACGATG
TATCGCCGAATTTTCTTGAAGGTTATCCTCACTGCCCACCGTAAAATCTA
CGGTCTATCGTGACGGCCTTGTCGTGCCGGGGGTTTGCCCGCTCGGCAGG
TGGCGTCGTCAGAGACGGGCGTGCGTTACCTTATTGCTAACAGTCATGTA
AGCGGGCTGTTGTCCGCTGCTGGGGGAGGCGGCGAAAGTGAAGGTGAAAG
TTCCTCTACTCTGGACCCCCTGCTCGGGACAAGCGCGCTCAGAACATTGG
CTATCATTTTCGCCAAGGCTGCGGGCATGGGGCTAAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig74065:254..2841+

>mRNA_H-elongata_contig74065.15098.1 ID=mRNA_H-elongata_contig74065.15098.1|Name=mRNA_H-elongata_contig74065.15098.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig74065:254..2841+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATCGAGGCAGCCTGCCGTCGTGGTGTCATGGCAGCCCTCTCTTC
GCAGCTGGACGAGGTTGTCGATGGGCTGACCGACCGCCAAGCGTCAACGC
CGAGGCTACGCTTTGCCGACACGGCCGCAAGGTGATGGCGATCGAGGCAG
CCTGCCGTCGTGGTGTCATGGCAGCCCTCTCTTCGCAGCTGGACGAGGTT
GTCGATGGGCTGACCGACCGCCAAGCGTCAACGCCGAGGCTACGCTTTGC
CGACACGGCCGCAAGGTGGTTAATGTCTGCGTCGGAGTCAGCTTTCGAGG
CGGCAGTGGAGACCGCGTCGGTGCTATTGGTGACCAATCTCACGCAGGAT
TCGTCTGATCCTCTACTGCAGCTGAACGCACTGGAACTCCTCGAGCAGGC
GAGGCACTGTTAATGTCTGCGTCGGAGTCAGCTTTCGAGGCGGCAGTGGA
GACCGCGTCGGTGCTATTGGTGACCAATCTCACGCAGGATTCGTCTGATC
CTCTACTGCAGCTGAACGCACTGGAACTCCTCGAGCAGGCGAGGCACTAG
AG
back to top