mRNA_H-elongata_contig74060.15096.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig74060.15096.1
Unique NamemRNA_H-elongata_contig74060.15096.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.520e-45
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    1 IKMYELDKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSWK 246
            IKMYE DK+G KVY+DPLDWW VRC DFPHLA+LARRVLAIPATQAESERLFSC GNIV KNRNNLAPTTVELLVLLRHSWK
Sbjct:  207 IKMYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWK 288          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.260e-28
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
Query:   76 TDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSWK 246
            TDFPHLA+LARRVLAIPATQA+SERLFSC GNIV KNRNNLAPTTVELLVLLRHSWK
Sbjct:  152 TDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWK 208          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.240e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   19 DKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHS 240
            ++ G +V   PL+WW V+  ++P LASLARRVL IPA QA+SER+FS  G +V K R  + P  V L+V LR++
Sbjct:  470 EEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.270e-14
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 IKMYELDKDGT---KVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
            I+++++ K  T   KV+ +PLD W  +  ++P LA+LARRVLAIP++QA+SER+FS  G  V   R+ L    VELLV LR+ W
Sbjct:  464 IRVWDMQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVW 547          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: UPI001C19DB61 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19DB61)

HSP 1 Score: 71.2 bits (173), Expect = 4.640e-13
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   49 PLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
            P  WW  + + FP L+ LA++ LAIPAT A SERLFS  GN++   R NL+PTT E L+  + +W
Sbjct:  178 PFKWWASQESQFPILSQLAKKYLAIPATSAASERLFSDAGNVMTVKRTNLSPTTFEHLIFCKRNW 242          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: UPI001C164491 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C164491)

HSP 1 Score: 70.5 bits (171), Expect = 1.020e-12
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   49 PLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
            P  WW  + + FP L+ LA++ LAIPAT A SERLFS  GN++   R NL+PTT E L+  + +W
Sbjct:  189 PFKWWASQESRFPILSQLAKKYLAIPATSAASERLFSDAGNVMTVKRTNLSPTTFEHLIFCKRNW 253          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: UPI000CD602C4 (zinc finger BED domain-containing protein 4-like isoform X1 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=UPI000CD602C4)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   46 DPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLL 231
            DPL WW    T FP L+ LA++ L +PAT + SER+FSC+GNIV  +R +L P TV++LV L
Sbjct:  182 DPLKWWKEHETLFPALSHLAKKYLLVPATSSPSERVFSCSGNIVTCHRASLKPETVDMLVFL 243          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6I8U4U8_AEDAE (BED-type domain-containing protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=A0A6I8U4U8_AEDAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.380e-12
Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   37 VYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLLRHSW 243
            V +D L WW      FP LA  ARR+L IPAT A SER+FSC+GNI+   R+ LA   +E+LV ++ ++
Sbjct:  663 VEVDVLQWWKKNERVFPCLAKCARRILGIPATSAPSERVFSCSGNIMTSQRHQLASKNLEMLVYIKQNF 731          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: G3Q1U2_GASAC (Uncharacterized protein n=2 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3Q1U2_GASAC)

HSP 1 Score: 69.7 bits (169), Expect = 4.570e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   46 DPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLFSCTGNIVAKNRNNLAPTTVELLVLL 231
            DPL WW +    FP L+ LA++ L +PAT + SER+FSC+GNIV  +R +L P TV+ LV L
Sbjct:  537 DPLKWWRIMKLSFPGLSRLAKKYLLVPATSSPSERVFSCSGNIVTCHRASLKPDTVDRLVFL 598          
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.210e-12
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 IKMYELDKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERL 153
            I ++    DG KVY DPLDWW  R  +FPHLA+LARRVLAIP++QA SER+
Sbjct:  499 ISIWYWGTDGKKVYNDPLDWWRTRQMEFPHLAALARRVLAIPSSQAHSERV 549          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig74060.15096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE1.520e-4589.02Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE2.260e-2892.98Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.240e-1450.00Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI2.270e-1447.62Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI001C19DB614.640e-1349.23Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C1644911.020e-1249.23Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
UPI000CD602C41.200e-1253.23zinc finger BED domain-containing protein 4-like i... [more]
A0A6I8U4U8_AEDAE3.380e-1247.83BED-type domain-containing protein n=1 Tax=Aedes a... [more]
G3Q1U2_GASAC4.570e-1251.61Uncharacterized protein n=2 Tax=Gasterosteus acule... [more]
A0A6H5KUY5_9PHAE6.210e-1262.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig74060contigH-elongata_contig74060:915..1160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue4e-13
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size246
Cds size240
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.2118387-UTR-H-elongata_contig74060:914..9201622931145.2118387-UTR-H-elongata_contig74060:914..920Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74060 915..920 +
1691679717.0903435-UTR-H-elongata_contig74060:914..9201691679717.0903435-UTR-H-elongata_contig74060:914..920Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig74060 915..920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.234741-CDS-H-elongata_contig74060:920..11601622931145.234741-CDS-H-elongata_contig74060:920..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74060 921..1160 +
1691679717.1126566-CDS-H-elongata_contig74060:920..11601691679717.1126566-CDS-H-elongata_contig74060:920..1160Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig74060 921..1160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig74060.15096.1prot_H-elongata_contig74060.15096.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig74060 921..1160 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig74060.15096.1

>prot_H-elongata_contig74060.15096.1 ID=prot_H-elongata_contig74060.15096.1|Name=mRNA_H-elongata_contig74060.15096.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MYELDKDGTKVYIDPLDWWWVRCTDFPHLASLARRVLAIPATQAESERLF
SCTGNIVAKNRNNLAPTTVELLVLLRHSWK
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mRNA from alignment at H-elongata_contig74060:915..1160+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig74060.15096.1 ID=mRNA_H-elongata_contig74060.15096.1|Name=mRNA_H-elongata_contig74060.15096.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig74060:915..1160+ (Himanthalia elongata Himel1 dioecious)
ATCAAGATGTATGAGTTAGACAAGGACGGCACAAAGGTGTACATTGATCC CTTGGACTGGTGGTGGGTACGGTGCACAGACTTCCCGCACTTGGCCAGCC TCGCCCGCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCGAGCGT CTGTTCTCCTGCACTGGAAACATCGTCGCGAAGAATCGCAACAACTTGGC CCCCACCACCGTCGAGCTGCTCGTCCTCCTGCGCCACTCGTGGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig74060:915..1160+

>mRNA_H-elongata_contig74060.15096.1 ID=mRNA_H-elongata_contig74060.15096.1|Name=mRNA_H-elongata_contig74060.15096.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig74060:915..1160+ (Himanthalia elongata Himel1 dioecious)
ATGTATGAGTTAGACAAGGACGGCACAAAGGTGTACATTGATCCCTTGGA
CTGGTGGTGGGTACGGTGCACAGACTTCCCGCACTTGGCCAGCCTCGCCC
GCCGTGTGCTGGCGATCCCCGCCACTCAGGCAGAGTCCGAGCGTCTGTTC
TCCTGCACTGGAAACATCGTCGCGAAGAATCGCAACAACTTGGCCCCCAC
CACCGTCGAGCTGCTCGTCCTCCTGCGCCACTCGTGGAAGATGTATGAGT
TAGACAAGGACGGCACAAAGGTGTACATTGATCCCTTGGACTGGTGGTGG
GTACGGTGCACAGACTTCCCGCACTTGGCCAGCCTCGCCCGCCGTGTGCT
GGCGATCCCCGCCACTCAGGCAGAGTCCGAGCGTCTGTTCTCCTGCACTG
GAAACATCGTCGCGAAGAATCGCAACAACTTGGCCCCCACCACCGTCGAG
CTGCTCGTCCTCCTGCGCCACTCGTGGAAG
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