mRNA_H-elongata_contig7404.15094.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7404.15094.1
Unique NamemRNA_H-elongata_contig7404.15094.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7404.15094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7404contigH-elongata_contig7404:38..263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size217
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7404.15094.1prot_H-elongata_contig7404.15094.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7404 38..235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.0686402-CDS-H-elongata_contig7404:37..1151622931145.0686402-CDS-H-elongata_contig7404:37..115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7404 38..115 -
1691679717.0458345-CDS-H-elongata_contig7404:37..1151691679717.0458345-CDS-H-elongata_contig7404:37..115Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7404 38..115 -
1622931145.0886176-CDS-H-elongata_contig7404:124..2351622931145.0886176-CDS-H-elongata_contig7404:124..235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7404 125..235 -
1691679717.05707-CDS-H-elongata_contig7404:124..2351691679717.05707-CDS-H-elongata_contig7404:124..235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7404 125..235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.1091716-UTR-H-elongata_contig7404:235..2631622931145.1091716-UTR-H-elongata_contig7404:235..263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7404 236..263 -
1691679717.0660837-UTR-H-elongata_contig7404:235..2631691679717.0660837-UTR-H-elongata_contig7404:235..263Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7404 236..263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7404.15094.1

>prot_H-elongata_contig7404.15094.1 ID=prot_H-elongata_contig7404.15094.1|Name=mRNA_H-elongata_contig7404.15094.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAEVMLYGCVTWTLSP
GDFDKLREAHRGM
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mRNA from alignment at H-elongata_contig7404:38..263-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7404.15094.1 ID=mRNA_H-elongata_contig7404.15094.1|Name=mRNA_H-elongata_contig7404.15094.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=226bp|location=Sequence derived from alignment at H-elongata_contig7404:38..263- (Himanthalia elongata Himel1 dioecious)
CAGCAGCGTTGGGAACGTCGGCCCTGAGATGAAACGCCGTACTGGCTACG
CCTGGAACTGCTTCCTCAAGTACAGCAGGGCGGTGTACGACAACCCATAC
ATCGCAGTGGCAGACAAGGTCCGTTTCCTGAAGGCAGAAGTACTCGAGGT
CATGCTCTATGGCTGTGTGACCTGGACTCTTTCACCCGGCGACTTCGACA
AGCTGCGGGAAGCCCACCGCGGAATG
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Coding sequence (CDS) from alignment at H-elongata_contig7404:38..263-

>mRNA_H-elongata_contig7404.15094.1 ID=mRNA_H-elongata_contig7404.15094.1|Name=mRNA_H-elongata_contig7404.15094.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig7404:38..263- (Himanthalia elongata Himel1 dioecious)
ATGAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTCAAGTACAGCAG
GGCGGTGTACGACAACCCATACATCGCAGTGGCAGACAAGGTCCGTTTCC
TGAAGGCAGAAATGAAACGCCGTACTGGCTACGCCTGGAACTGCTTCCTC
AAGTACAGCAGGGCGGTGTACGACAACCCATACATCGCAGTGGCAGACAA
GGTCCGTTTCCTGAAGGCAGAAGTCATGCTCTATGGCTGTGTGACCTGGA
CTCTTTCACCCGGCGACTTCGACAAGCTGCGGGAAGCCCACCGCGGAATG
GTCATGCTCTATGGCTGTGTGACCTGGACTCTTTCACCCGGCGACTTCGA
CAAGCTGCGGGAAGCCCACCGCGGAATG
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