mRNA_H-elongata_contig73961.15089.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73961.15089.1
Unique NamemRNA_H-elongata_contig73961.15089.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73961.15089.1 vs. uniprot
Match: A0A6H5JDT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT9_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 3.860e-41
Identity = 76/110 (69.09%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:    1 RSRETRVEGLPAVRAEAERMRVMKETLGYPTPLGNLKLKFEVHVERWAYGERELMCQWRASTLNASLCGGRRELETRGMMMLHLWTSEDGEALSVEPKSKPSTWTILRSP 330
            R+ E R+ G  AV  EAER+RV+ ETLG  T  GNLKLKF++HV+ WA+GERELMCQWR  T NA +CGGRRELETRGMM L LWTSEDGEA  VEPK+K STW IL SP
Sbjct:   97 RAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNLKLKFQLHVDHWAFGERELMCQWRVFTRNAGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKTSTWAILGSP 206
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BLAST of mRNA_H-elongata_contig73961.15089.1 vs. uniprot
Match: D7FWR6_ECTSI (Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR6_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 8.100e-37
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 RSRETRVEGLPAVRAEAERMRVMKETLGYPTPLGNLKLKFEVHVERWAYGERELMCQWRASTLNASLCGGRRELETRGMMMLHLWTSEDGEALSVEPKSKPST 309
            R+ E R+ G  AV  EAER+RV+ ETLG  T  GN+KLKFE+HV+ WA+GERELMCQWR  T N  +CGGRRELETRGMM L LWTSEDGEA  VEPK+K ST
Sbjct:  977 RAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNIKLKFELHVDHWAFGERELMCQWRVFTRNVGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKAST 1079
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73961.15089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDT9_9PHAE3.860e-4169.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWR6_ECTSI8.100e-3767.96Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrola... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73961contigH-elongata_contig73961:844..1701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.9689035-CDS-H-elongata_contig73961:843..9721622931143.9689035-CDS-H-elongata_contig73961:843..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73961 844..972 +
1691679716.527325-CDS-H-elongata_contig73961:843..9721691679716.527325-CDS-H-elongata_contig73961:843..972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73961 844..972 +
1622931143.9885988-CDS-H-elongata_contig73961:1500..17011622931143.9885988-CDS-H-elongata_contig73961:1500..1701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73961 1501..1701 +
1691679716.535038-CDS-H-elongata_contig73961:1500..17011691679716.535038-CDS-H-elongata_contig73961:1500..1701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73961 1501..1701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73961.15089.1prot_H-elongata_contig73961.15089.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73961 844..1701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73961.15089.1

>prot_H-elongata_contig73961.15089.1 ID=prot_H-elongata_contig73961.15089.1|Name=mRNA_H-elongata_contig73961.15089.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
RSRETRVEGLPAVRAEAERMRVMKETLGYPTPLGNLKLKFEVHVERWAYG
ERELMCQWRASTLNASLCGGRRELETRGMMMLHLWTSEDGEALSVEPKSK
PSTWTILRSP
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mRNA from alignment at H-elongata_contig73961:844..1701+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73961.15089.1 ID=mRNA_H-elongata_contig73961.15089.1|Name=mRNA_H-elongata_contig73961.15089.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig73961:844..1701+ (Himanthalia elongata Himel1 dioecious)
CGTTCGAGAGAGACGCGCGTGGAGGGGCTTCCGGCCGTGCGAGCGGAAGC
AGAAAGGATGCGCGTCATGAAGGAAACTCTGGGCTATCCAACGCCGCTCG
GTAACTTGAAGCTCAAGTTCGAAGTGCACGTGAGGTTCAAAGAGAGGGTG
CGGTGGTGGTGGCGGTAATGGGATTTATGCCGTCGAAGTGTGTGCAGAAA
AGTGGTATGTGGGTGACTTGACTTGAAAACGTAGTAAGCGTGGCGAAACA
CACATTCAAGCCATATTATATTGCTGTTGTATTTTGTTTGAGGGGGCAGC
TTTCTGGAATCCCTACCTAAAATATTCGTCGGTAGACGGCAAAATGCTTC
GGATTTATTTTCCGCAATGTAGAAAAGAGACGTTCTGACTCGAGTAAGGC
TTATCACGAAGAAAATACGCCAGTTTGTTTTTGTTTTGAAGTATGTAGTT
AAAAAAACTGGTCGCCGTTTTCTGTGGAATCATCCTCTTGTCGATTTATT
CTTGAATACAAGTCTGCCTTCCTGACTTATTTCTTTCATTTCTCTTTTCT
ATATTTGCATTTTTATATGCAATATTTCTTTATTTCTTTATTTATTTCTT
TATTTTGGTGATTATTTCTATGCGCTTCATCTTCCTCAACCATGTCGGTT
TGTCAAGGTTGAACGCTGGGCTTACGGAGAACGAGAGCTCATGTGCCAGT
GGCGCGCCAGTACTCTAAACGCCTCTCTCTGCGGCGGGCGGCGGGAGCTA
GAGACGCGCGGGATGATGATGCTGCATCTGTGGACCAGCGAGGACGGCGA
GGCTCTCAGCGTCGAGCCCAAGAGCAAGCCTTCCACCTGGACCATCCTTC
GCTCGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig73961:844..1701+

>mRNA_H-elongata_contig73961.15089.1 ID=mRNA_H-elongata_contig73961.15089.1|Name=mRNA_H-elongata_contig73961.15089.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig73961:844..1701+ (Himanthalia elongata Himel1 dioecious)
CGTTCGAGAGAGACGCGCGTGGAGGGGCTTCCGGCCGTGCGAGCGGAAGC
AGAAAGGATGCGCGTCATGAAGGAAACTCTGGGCTATCCAACGCCGCTCG
GTAACTTGAAGCTCAAGTTCGAAGTGCACCGTTCGAGAGAGACGCGCGTG
GAGGGGCTTCCGGCCGTGCGAGCGGAAGCAGAAAGGATGCGCGTCATGAA
GGAAACTCTGGGCTATCCAACGCCGCTCGGTAACTTGAAGCTCAAGTTCG
AAGTGCACGTTGAACGCTGGGCTTACGGAGAACGAGAGCTCATGTGCCAG
TGGCGCGCCAGTACTCTAAACGCCTCTCTCTGCGGCGGGCGGCGGGAGCT
AGAGACGCGCGGGATGATGATGCTGCATCTGTGGACCAGCGAGGACGGCG
AGGCTCTCAGCGTCGAGCCCAAGAGCAAGCCTTCCACCTGGACCATCCTT
CGCTCGCCAGTTGAACGCTGGGCTTACGGAGAACGAGAGCTCATGTGCCA
GTGGCGCGCCAGTACTCTAAACGCCTCTCTCTGCGGCGGGCGGCGGGAGC
TAGAGACGCGCGGGATGATGATGCTGCATCTGTGGACCAGCGAGGACGGC
GAGGCTCTCAGCGTCGAGCCCAAGAGCAAGCCTTCCACCTGGACCATCCT
TCGCTCGCCA
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