mRNA_H-elongata_contig73942.15085.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73942.15085.1
Unique NamemRNA_H-elongata_contig73942.15085.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 62.0 bits (149), Expect = 1.760e-10
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGAEHFIENCISEEKVR 237
            M ++RLPK LM+GE++ G    GG++K +  CL  +LK  GI  D W + AQD   WR    +GA+      I+E K +
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQK 79          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-8
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGAEHFIENCISEEKVR 237
            MD+ RLPK L++G++  G+ R GG+ + +   L  +LK   IN   W   A D   WR+T + GA  +  N I+  KV+
Sbjct:  428 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRRTLKTGAAIYEANRIAAAKVK 506          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST)

HSP 1 Score: 59.7 bits (143), Expect = 1.290e-8
Identity = 28/79 (35.44%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGAEHFIENCISEEKVR 237
            MD+ RLPK L++G+++ G+ R GG+ + +   L  +LK   +N   W   A D   WR+T + GA  +  N I+  KV+
Sbjct:   12 MDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVK 90          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: C3ZFY5_BRAFL (C2H2-type domain-containing protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZFY5_BRAFL)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-8
Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGA 195
            MD+ RLPK L++GE+  G    G  +  +   L   LK F I  D W +AA D  +WR+   QGA
Sbjct:   62 MDDHRLPKILLYGELAEGKRHVGRPKLRYKDSLKATLKDFSIPVDSWELAASDRSQWRRLVHQGA 126          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A654HW91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HW91_9CEST)

HSP 1 Score: 57.8 bits (138), Expect = 6.660e-8
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGAEHFIENCISEEKVR 237
            MD+ RLPK L++G++  G+ R G + + +   L  +LK   IN   W   A D   WR+T + GA  +  N I+  KV+
Sbjct:  759 MDDERLPKRLIYGDVATGSRRQGSQIRRYKDTLKSSLKRLQINPTNWEEIAHDRPTWRRTVKTGAAIYEANRIAAAKVK 837          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 1.080e-7
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQ----WTIAAQDEVEWRKTAEQGAEHFI 207
            M++ RLPK ++ GE+  GAG  GG+E +W+  L E+L  FG+  ++    W  +A+D+  W    E GA  F+
Sbjct:  144 MEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFM 216          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.080e-7
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQ----WTIAAQDEVEWRKTAEQGAEHFI 207
            M+++RLPK ++ GE+ RG G  GG+E +W+  L E+L  F +  ++    W  +A+D   W    E GA  F+
Sbjct:  121 MEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFM 193          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A183SH26_SCHSO (C2H2-type domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SH26_SCHSO)

HSP 1 Score: 56.2 bits (134), Expect = 1.170e-7
Identity = 29/79 (36.71%), Postives = 41/79 (51.90%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGAEHFIENCISEEKVR 237
            MDN RLPK L++G++  G+ R  G+ + +   L  +LK   IN   W    Q+   WRKT   GAE    N I+  K +
Sbjct:    1 MDNERLPKQLLYGDVAMGSYRQEGQVRSYKDTLKTSLKQLQINPATWEDLTQNRPAWRKTVNTGAEICEANKITAAKTK 79          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A654GTZ3_9CEST (C2H2-type domain-containing protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654GTZ3_9CEST)

HSP 1 Score: 57.0 bits (136), Expect = 1.220e-7
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGAEHFIENCISEEKVR 237
            MD+ RLPK L++G++  G+ R GG+ + +   L  +LK   I    W   A D   WR+T + GA  +  N I+  KV+
Sbjct:  425 MDDERLPKRLLYGDVATGSRRQGGQIRRYNDTLKSSLKRLQIKPTNWEELALDRPTWRRTVKTGAAIYEANRIAAAKVK 503          
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Match: A0A7M3QR85_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QR85_SPIER)

HSP 1 Score: 56.6 bits (135), Expect = 1.570e-7
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIAAQDEVEWRKTAEQGAEHFIENCISEEKV 234
            MD+ RLPK L++G++  G+ R GG+ + +   L  +LK   IN   W   A+D   WR+T + GA  +  N I+  K 
Sbjct:  253 MDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKFSLKRLQINPANWEDLARDRPTWRRTVKTGAAIYGANRIAAAKT 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73942.15085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00165228C01.760e-1039.24uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
A0A7M3PXV5_SPIER1.010e-836.71Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A654HMC6_9CEST1.290e-835.44Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
C3ZFY5_BRAFL2.130e-840.00C2H2-type domain-containing protein n=2 Tax=Branch... [more]
A0A654HW91_9CEST6.660e-835.44Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A6H5JMA1_9PHAE1.080e-736.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHK9_9PHAE1.080e-735.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A183SH26_SCHSO1.170e-736.71C2H2-type domain-containing protein n=1 Tax=Schist... [more]
A0A654GTZ3_9CEST1.220e-735.44C2H2-type domain-containing protein n=1 Tax=Sparga... [more]
A0A7M3QR85_SPIER1.570e-735.90Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73942contigH-elongata_contig73942:1944..2180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.1
Seed ortholog evalue5.5e-07
Seed eggNOG ortholog6500.XP_005092354.1
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.45064-CDS-H-elongata_contig73942:1943..21801622931143.45064-CDS-H-elongata_contig73942:1943..2180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73942 1944..2180 -
1691679716.3446105-CDS-H-elongata_contig73942:1943..21801691679716.3446105-CDS-H-elongata_contig73942:1943..2180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73942 1944..2180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73942.15085.1prot_H-elongata_contig73942.15085.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73942 1944..2180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73942.15085.1

>prot_H-elongata_contig73942.15085.1 ID=prot_H-elongata_contig73942.15085.1|Name=mRNA_H-elongata_contig73942.15085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MDNTRLPKCLMFGEIMRGAGRAGGKEKEWMGCLFENLKIFGINADQWTIA
AQDEVEWRKTAEQGAEHFIENCISEEKVR
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mRNA from alignment at H-elongata_contig73942:1944..2180-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73942.15085.1 ID=mRNA_H-elongata_contig73942.15085.1|Name=mRNA_H-elongata_contig73942.15085.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig73942:1944..2180- (Himanthalia elongata Himel1 dioecious)
ATGGACAACACGAGACTGCCGAAGTGCCTAATGTTCGGAGAAATCATGCG GGGCGCGGGTCGCGCGGGGGGGAAGGAAAAAGAGTGGATGGGGTGTCTTT TTGAAAACCTCAAAATTTTCGGCATCAACGCCGACCAGTGGACGATTGCA GCCCAGGACGAGGTGGAGTGGCGCAAGACGGCGGAACAAGGGGCGGAACA TTTCATAGAGAATTGTATCTCTGAAGAGAAAGTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig73942:1944..2180-

>mRNA_H-elongata_contig73942.15085.1 ID=mRNA_H-elongata_contig73942.15085.1|Name=mRNA_H-elongata_contig73942.15085.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig73942:1944..2180- (Himanthalia elongata Himel1 dioecious)
ATGGACAACACGAGACTGCCGAAGTGCCTAATGTTCGGAGAAATCATGCG
GGGCGCGGGTCGCGCGGGGGGGAAGGAAAAAGAGTGGATGGGGTGTCTTT
TTGAAAACCTCAAAATTTTCGGCATCAACGCCGACCAGTGGACGATTGCA
GCCCAGGACGAGGTGGAGTGGCGCAAGACGGCGGAACAAGGGGCGGAACA
TTTCATAGAGAATTGTATCTCTGAAGAGAAAGTCAGGATGGACAACACGA
GACTGCCGAAGTGCCTAATGTTCGGAGAAATCATGCGGGGCGCGGGTCGC
GCGGGGGGGAAGGAAAAAGAGTGGATGGGGTGTCTTTTTGAAAACCTCAA
AATTTTCGGCATCAACGCCGACCAGTGGACGATTGCAGCCCAGGACGAGG
TGGAGTGGCGCAAGACGGCGGAACAAGGGGCGGAACATTTCATAGAGAAT
TGTATCTCTGAAGAGAAAGTCAGG
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