mRNA_H-elongata_contig73928.15082.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73928.15082.1
Unique NamemRNA_H-elongata_contig73928.15082.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI001659326E (leucine-rich repeat domain-containing protein n=1 Tax=Flavobacterium johnsoniae TaxID=986 RepID=UPI001659326E)

HSP 1 Score: 60.1 bits (144), Expect = 4.440e-9
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADW--------HGVDIKDNYVSGLDLGSNNLT 159
            ++DALL IY+SLGGS W NN+GW  +  +A W        +GV ++DN+V  LDL  N L+
Sbjct:  102 EKDALLAIYNSLGGSGWINNTGWNASNPVASWDEQTGTGWYGVTVEDNHVVRLDLNYNRLS 162          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI0007FB3066 (PL29 family lyase N-terminal domain-containing protein n=1 Tax=Butyricimonas TaxID=574697 RepID=UPI0007FB3066)

HSP 1 Score: 59.3 bits (142), Expect = 8.300e-9
Identity = 22/57 (38.60%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDI-KDNYVSGLDLGSNNLTGEL 168
            + +AL+ +Y++  G+ WT  + W ++  +++WHG++  KD  +  +DLGSNNL+GEL
Sbjct:  542 EREALMDLYNATNGTSWTKQTNWGSDKPVSEWHGINCRKDGTIYEIDLGSNNLSGEL 598          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A3B0BVE1_9FLAO (Uncharacterized protein n=2 Tax=Ulvibacterium marinum TaxID=2419782 RepID=A0A3B0BVE1_9FLAO)

HSP 1 Score: 59.3 bits (142), Expect = 8.350e-9
Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDN-YVSGLDLGSNNLTGEL 168
            +  AL+ +++++GG+ WT N+GW T+A + DW G+   D  +V G+DL  N L GE+
Sbjct: 2658 ERQALIDLFEAMGGTNWTTNTGWNTDAPVCDWFGITTDDEAHVIGVDLPDNGLRGEI 2714          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A7X3WZA7_9BACT (Uncharacterized protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3WZA7_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 3.980e-8
Identity = 21/55 (38.18%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    4 EDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
            ++     Y++ GGS WT++S W T+A ++ W GV ++D+ V+ L+L  N L+G L
Sbjct: 1022 QEVFAAFYEATGGSSWTSDSNWLTDAPVSSWFGVTVEDSLVTALELPGNGLSGML 1076          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI001AAD6A5E (T9SS type A sorting domain-containing protein n=1 Tax=Winogradskyella sp. DF17 TaxID=2819984 RepID=UPI001AAD6A5E)

HSP 1 Score: 56.6 bits (135), Expect = 7.340e-8
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWC-TNASLADWHGVDIKDN-YVSGLDLGSNNLTGEL 168
            D   LL +Y+SLGG+ W++N  W  T+  +A W GV + DN  V GL+L +NNLTG L
Sbjct:  271 DYSNLLDVYNSLGGTNWSDNVNWLDTSLPIAMWTGVSLSDNGSVGGLNLPNNNLTGNL 328          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A7X4EDX9_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4EDX9_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-7
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
            D  AL  +Y +  G  W +N+ W ++  L +W+GVD+ D  V  L+LG NNL G++
Sbjct:  953 DRAALEALYHATRGDDWKDNTNWLSDEPLEEWYGVDVADGRVDHLNLGKNNLDGQI 1008          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A6I2MK65_9FLAO (Uncharacterized protein n=2 Tax=Maribacter luteus TaxID=2594478 RepID=A0A6I2MK65_9FLAO)

HSP 1 Score: 55.8 bits (133), Expect = 1.240e-7
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
            +++ LL++Y +  G  WT    W  N  ++ WHGV++KD++V GL+L +NNL G+L
Sbjct:   34 EKEVLLELYRNTHGENWT--IPWSLNKPVSKWHGVEVKDDHVVGLNLFNNNLVGQL 87          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A7X3R7H5_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3R7H5_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.360e-7
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIK-DNYVSGLDLGSNNLTGEL 168
            D   L+ +Y++L G  W   + W ++  L  WHGV +  D  V+GLDL SN+L+GEL
Sbjct:  121 DRAVLVAVYNALRGRVWMKKTNWLSSLPLGAWHGVTVNPDGRVTGLDLQSNSLSGEL 177          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: UPI001FCB66A0 (Two component regulator three Y domain protein n=1 Tax=Flavobacterium fluviatile TaxID=1862387 RepID=UPI001FCB66A0)

HSP 1 Score: 54.3 bits (129), Expect = 2.520e-7
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
            ++DALLK+Y +  G  WT    W    S++ WHGV+I +  V GL+L  NNL G+L
Sbjct:   16 EKDALLKLYHTTKGEEWTIK--WDLALSVSTWHGVEISNGKVVGLNLAGNNLKGQL 69          
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Match: A0A2G6THC0_9FLAO (Leucine rich repeat (LRR) protein n=2 Tax=unclassified Flavobacterium TaxID=196869 RepID=A0A2G6THC0_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 7.980e-7
Identity = 23/56 (41.07%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSNNLTGEL 168
            ++DAL+K+Y +  GS W     W  + S++ W+GV +K+  V+ L+LG NNL G+L
Sbjct:   26 EKDALIKLYYATNGSQWKIK--WDLSLSVSTWYGVQVKNGKVTALNLGDNNLEGQL 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73928.15082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001659326E4.440e-945.90leucine-rich repeat domain-containing protein n=1 ... [more]
UPI0007FB30668.300e-938.60PL29 family lyase N-terminal domain-containing pro... [more]
A0A3B0BVE1_9FLAO8.350e-940.35Uncharacterized protein n=2 Tax=Ulvibacterium mari... [more]
A0A7X3WZA7_9BACT3.980e-838.18Uncharacterized protein n=2 Tax=Gemmatimonadetes b... [more]
UPI001AAD6A5E7.340e-848.28T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7X4EDX9_9BACT1.020e-739.29Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A6I2MK65_9FLAO1.240e-741.07Uncharacterized protein n=2 Tax=Maribacter luteus ... [more]
A0A7X3R7H5_9BACT1.360e-742.11BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
UPI001FCB66A02.520e-744.64Two component regulator three Y domain protein n=1... [more]
A0A2G6THC0_9FLAO7.980e-741.07Leucine rich repeat (LRR) protein n=2 Tax=unclassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73928contigH-elongata_contig73928:2691..2867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog2880.D8LK68
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800,ko:K16666
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC6.3.1.20
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.2029161-CDS-H-elongata_contig73928:2690..28671622931143.2029161-CDS-H-elongata_contig73928:2690..2867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73928 2691..2867 +
1691679716.2722788-CDS-H-elongata_contig73928:2690..28671691679716.2722788-CDS-H-elongata_contig73928:2690..2867Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73928 2691..2867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73928.15082.1prot_H-elongata_contig73928.15082.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73928 2691..2867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73928.15082.1

>prot_H-elongata_contig73928.15082.1 ID=prot_H-elongata_contig73928.15082.1|Name=mRNA_H-elongata_contig73928.15082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
DEDALLKIYDSLGGSFWTNNSGWCTNASLADWHGVDIKDNYVSGLDLGSN
NLTGELRG*
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mRNA from alignment at H-elongata_contig73928:2691..2867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73928.15082.1 ID=mRNA_H-elongata_contig73928.15082.1|Name=mRNA_H-elongata_contig73928.15082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig73928:2691..2867+ (Himanthalia elongata Himel1 dioecious)
GATGAAGATGCACTGCTTAAAATCTATGATTCGCTGGGAGGCTCTTTCTG GACGAACAACTCCGGGTGGTGTACTAACGCATCCCTAGCTGACTGGCACG GCGTCGACATTAAGGATAACTATGTCTCGGGTTTGGACCTCGGATCAAAC AACCTCACCGGTGAGTTGAGGGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig73928:2691..2867+

>mRNA_H-elongata_contig73928.15082.1 ID=mRNA_H-elongata_contig73928.15082.1|Name=mRNA_H-elongata_contig73928.15082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig73928:2691..2867+ (Himanthalia elongata Himel1 dioecious)
GATGAAGATGCACTGCTTAAAATCTATGATTCGCTGGGAGGCTCTTTCTG
GACGAACAACTCCGGGTGGTGTACTAACGCATCCCTAGCTGACTGGCACG
GCGTCGACATTAAGGATAACTATGTCTCGGGTTTGGACCTCGGATCAAAC
AACCTCACCGGTGAGTTGAGGGGATAAGATGAAGATGCACTGCTTAAAAT
CTATGATTCGCTGGGAGGCTCTTTCTGGACGAACAACTCCGGGTGGTGTA
CTAACGCATCCCTAGCTGACTGGCACGGCGTCGACATTAAGGATAACTAT
GTCTCGGGTTTGGACCTCGGATCAAACAACCTCACCGGTGAGTTGAGGGG
ATAA
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