mRNA_H-elongata_contig7385.15078.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7385.15078.1
Unique NamemRNA_H-elongata_contig7385.15078.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.870e-22
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            G K I +R V+K KVD S K R    GW Q+P +DCG T+APVCRLQS  +L  IA +FNL+  Q+  +T+FL AD+++ V+ +   G+   D      V +L KS YGL QSP N
Sbjct:  879 GRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSN 994          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.560e-20
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            G K   ++ V+K K D S K R    GW Q+P +DCG T+APVCRLQS  +L  IA +FNL+  Q+  +T+FL AD++++++ +   G+   D      V +L KS YGL QSP N
Sbjct:  522 GRKRTKSKWVFKRKEDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRN 637          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.260e-20
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            G K I ++ V+K K D + K R    GW Q+P +DCG T+APVCR+QS  ++  I  EFNL   Q+  +T+FL AD+ +EV+ +   G+   D      V +L KS YGL QSP N
Sbjct:  173 GRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGN 288          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 7.420e-20
Identity = 50/116 (43.10%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            G K I ++ V+K K   S K R    GW Q+P +DCG T+APVCR QS  +L  IA +FNL+  Q+  +T+FL AD+++ V+ +   G+   D      V +L KS YGL QSP N
Sbjct:  502 GRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSN 617          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.430e-19
Identity = 51/116 (43.97%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            G K I ++ V+K K D S K R  V GW Q+P +D G TFAPVCRLQS  +L   A +FNL+  Q+  +T+FL AD+++ V+ +   G+   +      V +L KS YGL QSP N
Sbjct:   93 GRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSN 208          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.970e-19
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    7 KTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            K I ++ V+K K D + K R    GW Q+P +DCG T+APVCR+QS  ++  I  EFNL   Q+  +T+FL AD+ +EV+ +   G+   D      V +L KS YGL QSP N
Sbjct: 1196 KRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGN 1309          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.980e-19
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    7 KTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            K I ++ V+K K D + K R    GW Q+P +DCG T+APVCR+QS  ++  I  EFNL   Q+  +T+FL AD+ +EV+ +   G+   D      V +L KS YGL QSP N
Sbjct: 1361 KRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGN 1474          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.060e-18
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            G K I ++ V+K K D S K R    GW Q+P +DCG T+APVCRLQS  +L  I  +FNL+  Q+  +T+F  AD+++ V+ +   G+   D      V +L KS YGL Q   N
Sbjct:   93 GRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFVERPPGFEVKDKDGGDLVMQLQKSLYGLAQIASN 208          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.010e-18
Identity = 47/114 (41.23%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    7 KTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            K I ++ V+K K D + K R    GW Q+P +DCG T+APVCR+QS  ++  I  EFNL   Q+  +T+FL  D+ +EV+ +   G+   D      V +L +S YGL QSP N
Sbjct:  977 KRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYTDIHEEVFVEQPPGFEVKDKDGGDMVMKLNRSLYGLAQSPGN 1090          
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.780e-17
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTHILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTVTRLLKSRYGLRQSPFN 348
            G K   ++ V+K K D S K R    GW Q+P + CG T+APVCRLQS  +L  IA +FNL+  Q+   T+FL  D+++ V+ +   G+   +      V +L +S YGL QSP N
Sbjct:  678 GRKRTTSKWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFVEQPPGFEVKNKDGGDLVMQLQESLYGLAQSPSN 793          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7385.15078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN1_9PHAE3.870e-2246.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KER0_9PHAE1.560e-2043.10CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JME8_9PHAE7.260e-2043.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE7.420e-2043.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWT4_9PHAE2.430e-1943.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE4.970e-1942.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE4.980e-1942.98Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KPN4_9PHAE3.060e-1841.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JYB5_9PHAE8.010e-1841.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE2.780e-1740.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7385contigH-elongata_contig7385:4675..5025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score83.6
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog36914.XP_001527393.1
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.7892902-CDS-H-elongata_contig7385:4674..50251622931142.7892902-CDS-H-elongata_contig7385:4674..5025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7385 4675..5025 +
1691679716.0779045-CDS-H-elongata_contig7385:4674..50251691679716.0779045-CDS-H-elongata_contig7385:4674..5025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7385 4675..5025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7385.15078.1prot_H-elongata_contig7385.15078.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7385 4675..5025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7385.15078.1

>prot_H-elongata_contig7385.15078.1 ID=prot_H-elongata_contig7385.15078.1|Name=mRNA_H-elongata_contig7385.15078.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
GHKTIGNRRVYKVKVDKSRKERGAVLGWEQLPDVDCGRTFAPVCRLQSTH
ILLEIAAEFNLKCWQLTYNTSFLNADVMKEVYAKMAFGYGEVDGKRVPTV
TRLLKSRYGLRQSPFN*
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mRNA from alignment at H-elongata_contig7385:4675..5025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7385.15078.1 ID=mRNA_H-elongata_contig7385.15078.1|Name=mRNA_H-elongata_contig7385.15078.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at H-elongata_contig7385:4675..5025+ (Himanthalia elongata Himel1 dioecious)
GGACACAAGACCATTGGCAATAGACGTGTATACAAGGTTAAGGTAGACAA GTCACGCAAGGAACGAGGCGCTGTCCTAGGGTGGGAGCAATTGCCCGACG TCGACTGCGGTAGAACGTTCGCCCCCGTGTGTAGACTCCAAAGCACCCAC ATATTACTGGAGATCGCGGCAGAGTTTAACCTTAAGTGCTGGCAACTCAC CTACAACACCTCGTTTCTGAACGCAGACGTCATGAAGGAAGTGTACGCCA AGATGGCTTTCGGCTACGGTGAGGTCGACGGCAAAAGAGTTCCAACCGTA ACGAGGCTTCTCAAGAGCCGTTACGGCCTCCGCCAGAGTCCATTCAACTG A
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Coding sequence (CDS) from alignment at H-elongata_contig7385:4675..5025+

>mRNA_H-elongata_contig7385.15078.1 ID=mRNA_H-elongata_contig7385.15078.1|Name=mRNA_H-elongata_contig7385.15078.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig7385:4675..5025+ (Himanthalia elongata Himel1 dioecious)
GGACACAAGACCATTGGCAATAGACGTGTATACAAGGTTAAGGTAGACAA
GTCACGCAAGGAACGAGGCGCTGTCCTAGGGTGGGAGCAATTGCCCGACG
TCGACTGCGGTAGAACGTTCGCCCCCGTGTGTAGACTCCAAAGCACCCAC
ATATTACTGGAGATCGCGGCAGAGTTTAACCTTAAGTGCTGGCAACTCAC
CTACAACACCTCGTTTCTGAACGCAGACGTCATGAAGGAAGTGTACGCCA
AGATGGCTTTCGGCTACGGTGAGGTCGACGGCAAAAGAGTTCCAACCGTA
ACGAGGCTTCTCAAGAGCCGTTACGGCCTCCGCCAGAGTCCATTCAACTG
AGGACACAAGACCATTGGCAATAGACGTGTATACAAGGTTAAGGTAGACA
AGTCACGCAAGGAACGAGGCGCTGTCCTAGGGTGGGAGCAATTGCCCGAC
GTCGACTGCGGTAGAACGTTCGCCCCCGTGTGTAGACTCCAAAGCACCCA
CATATTACTGGAGATCGCGGCAGAGTTTAACCTTAAGTGCTGGCAACTCA
CCTACAACACCTCGTTTCTGAACGCAGACGTCATGAAGGAAGTGTACGCC
AAGATGGCTTTCGGCTACGGTGAGGTCGACGGCAAAAGAGTTCCAACCGT
AACGAGGCTTCTCAAGAGCCGTTACGGCCTCCGCCAGAGTCCATTCAACT
GA
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