mRNA_H-elongata_contig73811.15075.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73811.15075.1
Unique NamemRNA_H-elongata_contig73811.15075.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: D8LIC3_ECTSI (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC3_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.340e-6
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVEV 123
            RYIGEVGDLVVGR++EVQS+RWSVEV
Sbjct:   63 RYIGEVGDLVVGRVTEVQSKRWSVEV 88
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BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: A0A6H5KMR3_9PHAE (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR3_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.420e-6
Identity = 23/26 (88.46%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVEV 123
            RYIGEVGDLVVGR++EVQS+RWSVEV
Sbjct:   63 RYIGEVGDLVVGRVAEVQSKRWSVEV 88
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BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: B4E001_HUMAN (Exosome complex component RRP4 n=3 Tax=Homo sapiens TaxID=9606 RepID=B4E001_HUMAN)

HSP 1 Score: 47.0 bits (110), Expect = 3.890e-5
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVE 120
            RYIGEVGD+VVGRI+EVQ +RW VE
Sbjct:   75 RYIGEVGDIVVGRITEVQQKRWKVE 99
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BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: A0A2J8UJB9_PONAB (Ribosomal RNA-processing protein 4 (Fragment) n=2 Tax=Hominidae TaxID=9604 RepID=A0A2J8UJB9_PONAB)

HSP 1 Score: 47.0 bits (110), Expect = 6.420e-5
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVE 120
            RYIGEVGD+VVGRI+EVQ +RW VE
Sbjct:   75 RYIGEVGDIVVGRITEVQQKRWKVE 99
[Close]
BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: A0A2K5EZL6_AOTNA (Exosome component 2 n=4 Tax=Simiiformes TaxID=314293 RepID=A0A2K5EZL6_AOTNA)

HSP 1 Score: 47.0 bits (110), Expect = 8.240e-5
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVE 120
            RYIGEVGD+VVGRI+EVQ +RW VE
Sbjct:   41 RYIGEVGDIVVGRITEVQQKRWKVE 65
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BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: A0A067C1K3_SAPPC (Ribosomal RNA-processing protein 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1K3_SAPPC)

HSP 1 Score: 47.0 bits (110), Expect = 8.330e-5
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVEV 123
            RYIGEVGD+VVGRISEV S+RW V++
Sbjct:   59 RYIGEVGDIVVGRISEVGSKRWKVDI 84
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BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: A0A1V9YVZ5_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVZ5_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 8.550e-5
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVEV 123
            RYIGEVGD+VVGRISEV S+RW V++
Sbjct:   80 RYIGEVGDIVVGRISEVGSKRWKVDI 105
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BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: A0A1V9YN11_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN11_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 8.560e-5
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVEV 123
            RYIGEVGD+VVGRISEV S+RW V++
Sbjct:   80 RYIGEVGDIVVGRISEVGSKRWKVDI 105
[Close]
BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: EXOS2_HUMAN (Exosome complex component RRP4 n=107 Tax=Tetrapoda TaxID=32523 RepID=EXOS2_HUMAN)

HSP 1 Score: 47.0 bits (110), Expect = 8.620e-5
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVE 120
            RYIGEVGD+VVGRI+EVQ +RW VE
Sbjct:   75 RYIGEVGDIVVGRITEVQQKRWKVE 99
[Close]
BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Match: A3KFL5_HUMAN (Ribosomal RNA-processing protein 4 n=8 Tax=Hominoidea TaxID=314295 RepID=A3KFL5_HUMAN)

HSP 1 Score: 47.0 bits (110), Expect = 8.670e-5
Identity = 20/25 (80.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:   46 RYIGEVGDLVVGRISEVQSRRWSVE 120
            RYIGEVGD+VVGRI+EVQ +RW VE
Sbjct:   75 RYIGEVGDIVVGRITEVQQKRWKVE 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73811.15075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LIC3_ECTSI1.340e-688.46Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
A0A6H5KMR3_9PHAE1.420e-688.46Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
B4E001_HUMAN3.890e-580.00Exosome complex component RRP4 n=3 Tax=Homo sapien... [more]
A0A2J8UJB9_PONAB6.420e-580.00Ribosomal RNA-processing protein 4 (Fragment) n=2 ... [more]
A0A2K5EZL6_AOTNA8.240e-580.00Exosome component 2 n=4 Tax=Simiiformes TaxID=3142... [more]
A0A067C1K3_SAPPC8.330e-576.92Ribosomal RNA-processing protein 4 n=2 Tax=Saprole... [more]
A0A1V9YVZ5_9STRA8.550e-576.92Ribosomal RNA-processing protein 4 n=1 Tax=Thraust... [more]
A0A1V9YN11_9STRA8.560e-576.92Ribosomal RNA-processing protein 4 n=1 Tax=Achlya ... [more]
EXOS2_HUMAN8.620e-580.00Exosome complex component RRP4 n=107 Tax=Tetrapoda... [more]
A3KFL5_HUMAN8.670e-580.00Ribosomal RNA-processing protein 4 n=8 Tax=Hominoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73811contigH-elongata_contig73811:2694..2819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.3652396-CDS-H-elongata_contig73811:2693..28191622931142.3652396-CDS-H-elongata_contig73811:2693..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73811 2694..2819 -
1691679715.9912553-CDS-H-elongata_contig73811:2693..28191691679715.9912553-CDS-H-elongata_contig73811:2693..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73811 2694..2819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73811.15075.1prot_H-elongata_contig73811.15075.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73811 2694..2819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73811.15075.1

>prot_H-elongata_contig73811.15075.1 ID=prot_H-elongata_contig73811.15075.1|Name=mRNA_H-elongata_contig73811.15075.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
AIYVLCSDLPHLSGGRYIGEVGDLVVGRISEVQSRRWSVEV*
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mRNA from alignment at H-elongata_contig73811:2694..2819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73811.15075.1 ID=mRNA_H-elongata_contig73811.15075.1|Name=mRNA_H-elongata_contig73811.15075.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig73811:2694..2819- (Himanthalia elongata Himel1 dioecious)
GCTATATATGTTCTATGCTCTGATCTACCACATCTTTCTGGCGGTAGGTA
CATCGGGGAAGTAGGCGACCTCGTGGTGGGCAGGATCTCGGAGGTGCAGT
CGCGGCGATGGAGCGTGGAGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig73811:2694..2819-

>mRNA_H-elongata_contig73811.15075.1 ID=mRNA_H-elongata_contig73811.15075.1|Name=mRNA_H-elongata_contig73811.15075.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig73811:2694..2819- (Himanthalia elongata Himel1 dioecious)
GCTATATATGTTCTATGCTCTGATCTACCACATCTTTCTGGCGGTAGGTA
CATCGGGGAAGTAGGCGACCTCGTGGTGGGCAGGATCTCGGAGGTGCAGT
CGCGGCGATGGAGCGTGGAGGTATGAGCTATATATGTTCTATGCTCTGAT
CTACCACATCTTTCTGGCGGTAGGTACATCGGGGAAGTAGGCGACCTCGT
GGTGGGCAGGATCTCGGAGGTGCAGTCGCGGCGATGGAGCGTGGAGGTAT
GA
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