mRNA_H-elongata_contig73809.15074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73809.15074.1
Unique NamemRNA_H-elongata_contig73809.15074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73809.15074.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-16
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 KWRESYGIDTILDEDLSSAGLGKEFFWCGFDRAGRPCLVFRASEHSKS 144
            +WR +Y +DTILDEDLS  G+  EF+W GFDR GRPCLVFRA EH KS
Sbjct:   78 EWRTTYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKS 125
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BLAST of mRNA_H-elongata_contig73809.15074.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.300e-16
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 KWRESYGIDTILDEDLSSAGLGKEFFWCGFDRAGRPCLVFRASEHSKS 144
            +WR +Y +DTILDEDLS  G+  EF+W GFDR GRPCLVFRA EH KS
Sbjct:   78 EWRITYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKS 125
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BLAST of mRNA_H-elongata_contig73809.15074.1 vs. uniprot
Match: A0A7S2GJ01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJ01_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.210e-8
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    1 KWRESYGIDTILDEDLSSAGLGKEFFWCGFDRAGRPCLVFRASEH 135
            +WR+++G++ +L ED S   L +E +W GFD AG P LV  A+ H
Sbjct:   59 EWRDTFGLEQLLQEDFSDMDLRREVYWEGFDLAGHPVLVINAARH 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73809.15074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK06_ECTSI1.770e-1668.75CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAS6_9PHAE3.300e-1668.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GJ01_9STRA2.210e-844.44Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73809contigH-elongata_contig73809:65..208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.4e-13
Seed eggNOG ortholog2880.D7FK06
KEGG koko:K15335,ko:K19625
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
EC2.1.1.203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.3151922-CDS-H-elongata_contig73809:64..2081622931142.3151922-CDS-H-elongata_contig73809:64..208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73809 65..208 -
1691679715.9681664-CDS-H-elongata_contig73809:64..2081691679715.9681664-CDS-H-elongata_contig73809:64..208Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73809 65..208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73809.15074.1prot_H-elongata_contig73809.15074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73809 65..208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73809.15074.1

>prot_H-elongata_contig73809.15074.1 ID=prot_H-elongata_contig73809.15074.1|Name=mRNA_H-elongata_contig73809.15074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
KWRESYGIDTILDEDLSSAGLGKEFFWCGFDRAGRPCLVFRASEHSKS
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mRNA from alignment at H-elongata_contig73809:65..208-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73809.15074.1 ID=mRNA_H-elongata_contig73809.15074.1|Name=mRNA_H-elongata_contig73809.15074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig73809:65..208- (Himanthalia elongata Himel1 dioecious)
AAATGGCGGGAGTCTTACGGAATCGACACCATCTTGGACGAAGATCTGTC
TAGCGCCGGCCTCGGCAAGGAGTTCTTCTGGTGCGGGTTCGACCGCGCGG
GAAGGCCCTGCCTCGTGTTCCGGGCGTCCGAGCACAGCAAGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig73809:65..208-

>mRNA_H-elongata_contig73809.15074.1 ID=mRNA_H-elongata_contig73809.15074.1|Name=mRNA_H-elongata_contig73809.15074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig73809:65..208- (Himanthalia elongata Himel1 dioecious)
AAATGGCGGGAGTCTTACGGAATCGACACCATCTTGGACGAAGATCTGTC
TAGCGCCGGCCTCGGCAAGGAGTTCTTCTGGTGCGGGTTCGACCGCGCGG
GAAGGCCCTGCCTCGTGTTCCGGGCGTCCGAGCACAGCAAGTCGAAATGG
CGGGAGTCTTACGGAATCGACACCATCTTGGACGAAGATCTGTCTAGCGC
CGGCCTCGGCAAGGAGTTCTTCTGGTGCGGGTTCGACCGCGCGGGAAGGC
CCTGCCTCGTGTTCCGGGCGTCCGAGCACAGCAAGTCG
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