mRNA_H-elongata_contig73801.15073.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73801.15073.1
Unique NamemRNA_H-elongata_contig73801.15073.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73801.15073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73801contigH-elongata_contig73801:2403..2782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.2634687-CDS-H-elongata_contig73801:2402..27801622931142.2634687-CDS-H-elongata_contig73801:2402..2780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73801 2403..2780 +
1691679715.9565468-CDS-H-elongata_contig73801:2402..27801691679715.9565468-CDS-H-elongata_contig73801:2402..2780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73801 2403..2780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73801.15073.1prot_H-elongata_contig73801.15073.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73801 2403..2780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73801.15073.1

>prot_H-elongata_contig73801.15073.1 ID=prot_H-elongata_contig73801.15073.1|Name=mRNA_H-elongata_contig73801.15073.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
PLPPAPTAPYFIYSCLKKVGRMEGLRARSGSRVSTPLLCAHERPKGTSSN
RILSTIAYSLAPAAVAAWITGSSPAPNPCAVPSQAPSRVKPQAPLRQVCN
SRGSGDDGQSFLPLGRGCRRADGVTE
back to top

mRNA from alignment at H-elongata_contig73801:2403..2782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73801.15073.1 ID=mRNA_H-elongata_contig73801.15073.1|Name=mRNA_H-elongata_contig73801.15073.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=380bp|location=Sequence derived from alignment at H-elongata_contig73801:2403..2782+ (Himanthalia elongata Himel1 dioecious)
CCCCTTCCCCCCGCCCCCACCGCACCCTATTTCATTTACTCTTGTCTTAA
GAAGGTTGGGAGGATGGAGGGGCTGAGAGCCAGGTCTGGCTCTCGAGTTA
GTACACCTCTGCTATGTGCTCACGAGCGCCCAAAGGGCACATCGAGTAAT
CGTATTTTGTCCACCATCGCTTACTCGCTAGCTCCCGCAGCAGTAGCTGC
ATGGATCACGGGATCGTCTCCAGCTCCAAATCCGTGTGCGGTTCCGTCTC
AAGCGCCGTCTCGGGTTAAGCCTCAAGCCCCTTTGCGACAGGTGTGTAAT
AGCCGAGGCAGCGGCGACGATGGCCAAAGCTTTCTCCCTCTCGGTAGGGG
ATGTAGGCGGGCGGACGGGGTTACGGAAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig73801:2403..2782+

>mRNA_H-elongata_contig73801.15073.1 ID=mRNA_H-elongata_contig73801.15073.1|Name=mRNA_H-elongata_contig73801.15073.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig73801:2403..2782+ (Himanthalia elongata Himel1 dioecious)
CCCCTTCCCCCCGCCCCCACCGCACCCTATTTCATTTACTCTTGTCTTAA
GAAGGTTGGGAGGATGGAGGGGCTGAGAGCCAGGTCTGGCTCTCGAGTTA
GTACACCTCTGCTATGTGCTCACGAGCGCCCAAAGGGCACATCGAGTAAT
CGTATTTTGTCCACCATCGCTTACTCGCTAGCTCCCGCAGCAGTAGCTGC
ATGGATCACGGGATCGTCTCCAGCTCCAAATCCGTGTGCGGTTCCGTCTC
AAGCGCCGTCTCGGGTTAAGCCTCAAGCCCCTTTGCGACAGGTGTGTAAT
AGCCGAGGCAGCGGCGACGATGGCCAAAGCTTTCTCCCTCTCGGTAGGGG
ATGTAGGCGGGCGGACGGGGTTACGGAACCCCTTCCCCCCGCCCCCACCG
CACCCTATTTCATTTACTCTTGTCTTAAGAAGGTTGGGAGGATGGAGGGG
CTGAGAGCCAGGTCTGGCTCTCGAGTTAGTACACCTCTGCTATGTGCTCA
CGAGCGCCCAAAGGGCACATCGAGTAATCGTATTTTGTCCACCATCGCTT
ACTCGCTAGCTCCCGCAGCAGTAGCTGCATGGATCACGGGATCGTCTCCA
GCTCCAAATCCGTGTGCGGTTCCGTCTCAAGCGCCGTCTCGGGTTAAGCC
TCAAGCCCCTTTGCGACAGGTGTGTAATAGCCGAGGCAGCGGCGACGATG
GCCAAAGCTTTCTCCCTCTCGGTAGGGGATGTAGGCGGGCGGACGGGGTT
ACGGAA
back to top