mRNA_H-elongata_contig7375.15067.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7375.15067.1
Unique NamemRNA_H-elongata_contig7375.15067.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7375.15067.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 8.400e-13
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 SRQLLMECAPGRCPTLRGGAKYCLNTIIQTKSFPTTEVF 117
            +R LLMECAPGRCPTLRG +KYC N  IQTK+FP TEVF
Sbjct:  300 NRLLLMECAPGRCPTLRGASKYCNNNAIQTKTFPATEVF 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7375.15067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN51_ECTSI8.400e-1376.92Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7375contigH-elongata_contig7375:7202..7327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue8e-09
Seed eggNOG ortholog2880.D8LN51
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size111
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.5105855-UTR-H-elongata_contig7375:7201..72161622931141.5105855-UTR-H-elongata_contig7375:7201..7216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7375 7202..7216 +
1691679715.5797136-UTR-H-elongata_contig7375:7201..72161691679715.5797136-UTR-H-elongata_contig7375:7201..7216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7375 7202..7216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.523883-CDS-H-elongata_contig7375:7216..73271622931141.523883-CDS-H-elongata_contig7375:7216..7327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7375 7217..7327 +
1691679715.5900407-CDS-H-elongata_contig7375:7216..73271691679715.5900407-CDS-H-elongata_contig7375:7216..7327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7375 7217..7327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7375.15067.1prot_H-elongata_contig7375.15067.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7375 7217..7327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7375.15067.1

>prot_H-elongata_contig7375.15067.1 ID=prot_H-elongata_contig7375.15067.1|Name=mRNA_H-elongata_contig7375.15067.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MECAPGRCPTLRGGAKYCLNTIIQTKSFPTTEVFSR*
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mRNA from alignment at H-elongata_contig7375:7202..7327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7375.15067.1 ID=mRNA_H-elongata_contig7375.15067.1|Name=mRNA_H-elongata_contig7375.15067.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig7375:7202..7327+ (Himanthalia elongata Himel1 dioecious)
AGCCGCCAGCTGCTGATGGAATGCGCTCCTGGCCGTTGTCCGACGCTGCG
CGGAGGGGCTAAGTATTGCCTGAACACTATTATTCAGACGAAATCGTTTC
CAACGACAGAGGTATTTAGTAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig7375:7202..7327+

>mRNA_H-elongata_contig7375.15067.1 ID=mRNA_H-elongata_contig7375.15067.1|Name=mRNA_H-elongata_contig7375.15067.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig7375:7202..7327+ (Himanthalia elongata Himel1 dioecious)
ATGGAATGCGCTCCTGGCCGTTGTCCGACGCTGCGCGGAGGGGCTAAGTA
TTGCCTGAACACTATTATTCAGACGAAATCGTTTCCAACGACAGAGGTAT
TTAGTAGGTAAATGGAATGCGCTCCTGGCCGTTGTCCGACGCTGCGCGGA
GGGGCTAAGTATTGCCTGAACACTATTATTCAGACGAAATCGTTTCCAAC
GACAGAGGTATTTAGTAGGTAA
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