mRNA_H-elongata_contig7374.15064.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7374.15064.1 vs. uniprot
Match: A0A6H5KFK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK5_9PHAE) HSP 1 Score: 172 bits (435), Expect = 4.370e-42 Identity = 157/454 (34.58%), Postives = 210/454 (46.26%), Query Frame = 2
Query: 425 THDAMVGLGVKDLGQHLRELGVRADGCRIALAAVARVFNACILTRQLAAKQCAEVRTELARAVAGCFTRAAIVSDTRAVVREAAKRSRTLIMRLVDLELQCWTFPPLL-----SNRSKKMLRLCLPGLLSVLYLKHETYGMDWEARRDNTVENDIHSSFHVGEINESSTVAEEDCTGGDSGS----------------------------CSSGGS---RCRHNKSGIQSSRSPSDRRRRSESSMGTHAAARGVTLSLSYVGLQDDALQQVDLRNAHHQTGRVEK----SPARRRETGDAKDDTCKLN-LDKDTVVPLSQLLLQGNLLTDTGALALCPLVAASPNLRTIDLRWNPIGRRGVVALRK-----------------------------ALASNPWVYRVTREDSCGGGETYTKGKSGGVVLRARRRPKTTISDRARAYAFTVIPPSS 1576
T + M LG+ LGQ LRE GVR +G R+AL AVAR+ A LTR+LAA+QCAEVRTELA + RA +VSDTRA R + +RT+++RLV E+Q W S+ K+ +R + + E + + +D H + +V ++ A G DS + S GG R R G + + +R++ H A G TL+LS V L D L QV + T R ++ G KD N L T++PL LLL+GN LTD GA+AL PLV AS +L IDLR N I +G +AL+K AL +PWVYRVT E+ G +GGVVLRA+RRP +T+ DRARA+AF IPPS+
Sbjct: 36 TRETMAVLGLDTLGQSLRERGVRGEGARMALTAVARLLGALRLTRRLAAQQCAEVRTELALTLGRLSCRAMLVSDTRAAARRTSICNRTVLLRLVRSEMQLWRLRAAAAELQQSSNEKEAMRTAQAEQGGLFF-------SPGEGDANPSTSDDKHPA-NVRRYQDAERAAVTMNWGTDSETEXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKGGRGERRSRIQPKGKEGTGFERAQRKK-------HPAGAGFTLNLSGVDLDDQTLHQVVRKLLRQCTDRSRAWSGAGAMHEQQGGAGKDGRNGQNTLSSSTIMPLRCLLLRGNNLTDAGAIALVPLVEASCSLAAIDLRGNRIETKGELALKKVMACGVTGGRATKRSLEHRIMFEESLNQGALTRSPWVYRVTSEEVSGSDAREGSTSTGGVVLRAKRRPMSTVRDRARAHAFKRIPPSN 474
BLAST of mRNA_H-elongata_contig7374.15064.1 vs. uniprot
Match: D7G0E3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E3_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.980e-37 Identity = 140/381 (36.75%), Postives = 184/381 (48.29%), Query Frame = 2
Query: 557 RQLAAKQCAEVRTELARAVAGCFTRAAIVSDTRAVVREAAKRSRTLIMRLVDLELQCWTFPPLL-----SNRSKKMLRLCL---------PGL----LSVLYLKHET------------YGMDW------EARRDNTVENDIHSSFHVGEINESSTVAEEDCTGGDSGSCSSGGSRCRHNKSGIQSSRSPSDRRRRSESSMGTHAAARGVTLSLSYVGLQDDALQQVDLRNAHHQTGRVEKSP---ARRRETGDAKDD--TCKLNLDKDTVVPLSQLLLQGNLLTDTGALALCPLVAASPNLRTIDLRWNPIGRRGVVALRKALASNPWVYRVTREDSCGGGETYTKGKSGGVVLRARRRPKTTISDRARAYAFTVIPPSS 1576
R LAA+QCAEVRTELA A+ RA +VSDTRA R + +RTL++RLV E++ W S R K++LR L PG S Y KH T + ++W EA D + + E GG G R R G + + +R++ + G H L+LS L D+ L QV + T R P A + G A +D + L ++PL LLL+GN LTD GALAL PLV AS +L IDLR N IG +G +AL+KAL +PWVYRVT E++ G +GGVVLRA+RRP +T+ DRARA+AF IPPS+
Sbjct: 433 RHLAAQQCAEVRTELALALGRLSCRAMLVSDTRAAARRTSICNRTLLLRLVRSEMRLWRLRAAAAATEQSAREKEVLRTALTERGRPFFPPGEGDANPSTTYDKHPTNVCRSPDAESAAFTVNWGTDSEIEAAGDGXXXXXXXXXXXXXXYGDGEEI--ERSIGG------RGERRSRMQPKGNEGTGVERAKRKKRPAGAGFH-------LNLSGFDLDDETLHQVVRKLLRQCTDRSRAWPGAGAMYEQQGGAGEDGRNGQNTLSSSAIMPLRCLLLRGNNLTDAGALALVPLVEASSSLAAIDLRGNRIGTKGELALKKALTRSPWVYRVTSEEASGSDAREGSISTGGVVLRAKRRPMSTVRDRARAHAFKRIPPSN 798 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7374.15064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7374.15064.1 >prot_H-elongata_contig7374.15064.1 ID=prot_H-elongata_contig7374.15064.1|Name=mRNA_H-elongata_contig7374.15064.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=445bp MPQQQPARQRDQPHRNDERQPPMLEVVRVCRESKQDVEDLGAEWRWDLAPback to top mRNA from alignment at H-elongata_contig7374:5065..9195- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7374.15064.1 ID=mRNA_H-elongata_contig7374.15064.1|Name=mRNA_H-elongata_contig7374.15064.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4131bp|location=Sequence derived from alignment at H-elongata_contig7374:5065..9195- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7374:5065..9195- >mRNA_H-elongata_contig7374.15064.1 ID=mRNA_H-elongata_contig7374.15064.1|Name=mRNA_H-elongata_contig7374.15064.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2670bp|location=Sequence derived from alignment at H-elongata_contig7374:5065..9195- (Himanthalia elongata Himel1 dioecious)back to top |