mRNA_H-elongata_contig73724.15062.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73724.15062.1
Unique NamemRNA_H-elongata_contig73724.15062.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73724.15062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73724contigH-elongata_contig73724:1629..2695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.9646492-CDS-H-elongata_contig73724:1628..16711622931140.9646492-CDS-H-elongata_contig73724:1628..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73724 1629..1671 -
1691679715.383051-CDS-H-elongata_contig73724:1628..16711691679715.383051-CDS-H-elongata_contig73724:1628..1671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73724 1629..1671 -
1622931140.9791386-CDS-H-elongata_contig73724:2462..26951622931140.9791386-CDS-H-elongata_contig73724:2462..2695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73724 2463..2695 -
1691679715.3930502-CDS-H-elongata_contig73724:2462..26951691679715.3930502-CDS-H-elongata_contig73724:2462..2695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73724 2463..2695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73724.15062.1prot_H-elongata_contig73724.15062.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73724 1629..2695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73724.15062.1

>prot_H-elongata_contig73724.15062.1 ID=prot_H-elongata_contig73724.15062.1|Name=mRNA_H-elongata_contig73724.15062.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MTVAPGLLLVLYSVLKIRRDVAPWWGVDIVYGTAERPGDLSVNDDRSIGS
EFILDCVVSRRGSVLIPTARTNQRLFMRCRGTSTPTAAWKV*
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mRNA from alignment at H-elongata_contig73724:1629..2695-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73724.15062.1 ID=mRNA_H-elongata_contig73724.15062.1|Name=mRNA_H-elongata_contig73724.15062.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1067bp|location=Sequence derived from alignment at H-elongata_contig73724:1629..2695- (Himanthalia elongata Himel1 dioecious)
ATGACGGTTGCACCTGGGTTATTGCTTGTGCTTTACTCTGTGCTGAAAAT
AAGAAGAGACGTCGCTCCATGGTGGGGAGTGGACATCGTTTATGGCACTG
CAGAAAGACCAGGCGATCTAAGCGTAAACGACGATCGCTCCATCGGTTCT
GAATTCATATTGGACTGCGTAGTCAGTCGCCGAGGCTCGGTGTTGATCCC
AACGGCTCGCACCAACCAACGGTTGTTCATGAGGTAGATTTCTGGTTACC
TCCGACGGATGGCAGTGTTAGCATGAATAGCATCTTTGTTGGTATGAAAA
CAGCCGGTCACCACAGCTACCGTATCATAAAATCGTCCACGGCTTTGCCG
GCGTTTGACCATACAAAGGTTCCCTCCAATATCACACACGCAGCAGTACC
GTCCAAACGTTCGTCGCTGCCTCTCGTCCGCGATCGCTACGGGGACCACC
TTGGGTATCTATCGCATGCTTGCCCTGTGCGGTCGTTCCCTGGCTGACCA
CCTGATTTCGCAACGTTACGATTTATCCGAAGAAGCTCCCTTCAGAGTGC
AGAACGGTGCGATAAGATGCCATCAATCTAGGAGAAGGATTGCTTGATTG
AAGGCCTTCACAAATTATACTATTAATAGCAGCCTCTTTACATGTTGGCA
CATTCCCCCCCCCCAAAATATATATATAAATTGGAAACCGATGGTCGATA
TCCATCGGATCTTCCCACCCTCCAGGTGTGCAACAGCCCTCACTAGGTAG
AGTTCGTCAGTTTGGTCCAAAACGCTGGATCCCAGGGAAGCTCGAAGCAT
TTGTTTATGAGCCTCCCGCGTCACGGTCTCTAGCCTTCTGCTTCCAACCC
ATTAATTGTCTCTCACATTAAGTATCCGACGTAGACAGCAGTGTATGATG
AAACCAAATTTATCAGCGCGCGGCGTGCTCAGGAGCTCGCGTTCGCTGGT
GGGTATCCTGCCCCATTGTTTTTCGAAAGCGCCGCGCAACTGGTTGATCC
CCGACTGTTCACCGTCCGGAGCAGGTGCCGGGGTACTTCTACGCCAACAG
CCGCTTGGAAGGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73724:1629..2695-

>mRNA_H-elongata_contig73724.15062.1 ID=mRNA_H-elongata_contig73724.15062.1|Name=mRNA_H-elongata_contig73724.15062.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig73724:1629..2695- (Himanthalia elongata Himel1 dioecious)
ATGACGGTTGCACCTGGGTTATTGCTTGTGCTTTACTCTGTGCTGAAAAT
AAGAAGAGACGTCGCTCCATGGTGGGGAGTGGACATCGTTTATGGCACTG
CAGAAAGACCAGGCGATCTAAGCGTAAACGACGATCGCTCCATCGGTTCT
GAATTCATATTGGACTGCGTAGTCAGTCGCCGAGGCTCGGTGTTGATCCC
AACGGCTCGCACCAACCAACGGTTGTTCATGAGATGACGGTTGCACCTGG
GTTATTGCTTGTGCTTTACTCTGTGCTGAAAATAAGAAGAGACGTCGCTC
CATGGTGGGGAGTGGACATCGTTTATGGCACTGCAGAAAGACCAGGCGAT
CTAAGCGTAAACGACGATCGCTCCATCGGTTCTGAATTCATATTGGACTG
CGTAGTCAGTCGCCGAGGCTCGGTGTTGATCCCAACGGCTCGCACCAACC
AACGGTTGTTCATGAGGTGCCGGGGTACTTCTACGCCAACAGCCGCTTGG
AAGGTTTGAGTGCCGGGGTACTTCTACGCCAACAGCCGCTTGGAAGGTTT
GA
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