mRNA_H-elongata_contig73687.15061.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73687.15061.1
Unique NamemRNA_H-elongata_contig73687.15061.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: D7G1M3_ECTSI (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M3_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 2.320e-79
Identity = 141/210 (67.14%), Postives = 158/210 (75.24%), Query Frame = 1
Query:    1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDVVFPLPSTPAG-----SSTRSDTSDGGAGRSVDPGVSVERRASEAQGDKP-------LSGGTEA-FELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAGRLAGAG 591
            RSADTAR AEVITCG+TPHPGGHGE+KVRKT FGS+DAVAHRHFEDP +AV SL+AAGAFVCALETT+ ASSLFDV FPLP    G     +++  D    G G  V    + E   +EA+  K        L GG+    EL  GGVVALVLGNEVTGVDERVLG CDLVVE+PVFGLKNSLNVASAGTV LYE+LRQW+ AGRLAG+G
Sbjct:  359 RSADTARVAEVITCGFTPHPGGHGEEKVRKTGFGSVDAVAHRHFEDPSEAVRSLKAAGAFVCALETTDNASSLFDVRFPLPPALEGKARPKNASAVDAGTAGGGDVVRGSFAAEDSENEARAPKTDGRAVERLDGGSRGGLELEEGGVVALVLGNEVTGVDERVLGLCDLVVEVPVFGLKNSLNVASAGTVVLYEVLRQWSVAGRLAGSG 568          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A836CKA2_9STRA (SpoU_methylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKA2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 5.030e-33
Identity = 91/204 (44.61%), Postives = 108/204 (52.94%), Query Frame = 1
Query:    1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDV-VFPLPSTPAGSSTRSDTSDGGAGRSVDPGVSVERR-------------ASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEA 570
            RSADTA AAE++TCG TPHP G GEDK+RKTAF S+D V  RHF     AV +LRA G  V A+ETT  A+++F   +FP                      V   V V +R                        G + A+       +A VLG+EVTGVD  VL  CD VVELPV+G+KNSLNV SA T ALYE LRQ   A
Sbjct:  393 RSADTASAAEIVTCGLTPHPSGPGEDKLRKTAFSSLDTVPSRHFNSTAGAVRALRAEGYRVLAMETTSDATNMFTTDLFPAH--------------------VVVEVVVAKRHYXXXXXXXXXXXXXXXXXXXXXXGDSGAYRP-----LAFVLGHEVTGVDVSVLRECDGVVELPVYGIKNSLNVCSAATAALYEALRQLKAA 571          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A2E6CDK8_9BACT (RNA methyltransferase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E6CDK8_9BACT)

HSP 1 Score: 103 bits (256), Expect = 5.640e-24
Identity = 68/191 (35.60%), Postives = 86/191 (45.03%), Query Frame = 1
Query:    1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDVVFPLPSTPAGSSTRSDTSDGGAGRSVDPGVSVERRASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAG 573
            R+AD AR AEV+TCGYT HP      K+ KTA G++D V  RHFE    A+  LR  G  V ALETT  +    +V +P P                                                      +A VLGNE  GV+     RCD ++E+P++G KNSL VA A  VA +E+LRQW   G
Sbjct:   54 RTADAARIAEVLTCGYTAHP---PHKKLDKTALGTLDFVPTRHFETSSHALDYLRDEGXAVWALETTSHSVCYTEVDYPQP------------------------------------------------------LAXVLGNEALGVERATXERCDQMLEIPMYGYKNSLXVAGAAAVACFEVLRQWRTCG 187          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: R1ED08_EMIHU (SpoU_methylase domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ED08_EMIHU)

HSP 1 Score: 87.8 bits (216), Expect = 5.450e-17
Identity = 66/181 (36.46%), Postives = 80/181 (44.20%), Query Frame = 1
Query:    1 RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDAVLSLRAAGAFVCALETTEGASSLFDVVFPLPSTPAGSSTRSDTSDGGAGRSVDPGVSVERRASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALY 543
            R+ADTAR AEVITCG+TPHP      K+ KTAFG+I++            V         V A+ETTE + +   V FP    P G                                                 VALVLGNE  GVD  VL   D +VE+P FG+KNSLNVASA TV ++
Sbjct:  242 RTADTARCAEVITCGFTPHP---PNPKLAKTAFGAIESAVRXXXXXXXXXVA--------VYAMETTERSQAYSTVAFP----PGG-------------------------------------------------VALVLGNEQIGVDTDVLAAVDGIVEIPTFGVKNSLNVASAATVVVF 358          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: R1CTC7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CTC7_EMIHU)

HSP 1 Score: 82.4 bits (202), Expect = 3.540e-15
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1
Query:  406 VALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAE 567
            VA+VLGNEVTGVD+ V+  CD VVE+PVFG+KNSLNVA   +VALYE+LR+W +
Sbjct:  263 VAIVLGNEVTGVDKAVMEECDAVVEIPVFGVKNSLNVACCASVALYEVLRRWGK 316          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A7S2YLJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLJ2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.570e-14
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:  382 FELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQW 561
            ++ ++G  VALVLGNEVTGV   VL + D++VE+P +G+KNSLNVAS   + LYEILRQW
Sbjct:   54 YDASKG--VALVLGNEVTGVTASVLPQMDMIVEIPTYGVKNSLNVASCAPIVLYEILRQW 111          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A7S2E2W0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E2W0_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 5.450e-14
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
Query:  409 ALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQW 561
            AL+LGNEVTGVD  VL  CD +VE+P  GLKNSLNVASA +V ++E+LRQW
Sbjct:  210 ALILGNEVTGVDTAVLEECDFIVEIPTLGLKNSLNVASASSVIVFEVLRQW 260          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A7S1BMN9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMN9_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.160e-14
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  304 VDPGVSVERRASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQW 561
             D  V   R   EA+G +  S     + L  G   ALVLGNEVTGVD  V+   D +VE+P+FG KNSLNVA+A  V LYEILRQW
Sbjct:  139 TDRSVCYSREVGEAEGTESPSFRGPLY-LKEGKGTALVLGNEVTGVDTEVMDALDGLVEVPMFGTKNSLNVAAAAPVVLYEILRQW 223          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A382QX96_9ZZZZ (SpoU_methylase domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382QX96_9ZZZZ)

HSP 1 Score: 75.5 bits (184), Expect = 9.040e-14
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  385 ELTRGGVVALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAGRLAGAGP 594
            E+T    VALVLGNE  GV+  VL RCD ++E+PVFG KNSLNVA    V +YEILRQW       G  P
Sbjct:   86 EVTYPRPVALVLGNEALGVERDVLDRCDELLEVPVFGYKNSLNVACTAAVVVYEILRQWGYQPSPTGPPP 155          
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Match: A0A0M0JXU3_9EUKA (tRNA rRNA methyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXU3_9EUKA)

HSP 1 Score: 76.6 bits (187), Expect = 1.320e-13
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  406 VALVLGNEVTGVDERVLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAGRLAGAGPKIDLDP 612
            VALVLGNEV+GVD  VL  CD V+ +PVFG+KNSLNVA    +ALYE+LR+W       G  P  D  P
Sbjct:  159 VALVLGNEVSGVDAAVLAVCDAVLVVPVFGVKNSLNVACCAAIALYEVLRRW-------GKYPSADAAP 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73687.15061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1M3_ECTSI2.320e-7967.14SpoU_methylase domain-containing protein n=1 Tax=E... [more]
A0A836CKA2_9STRA5.030e-3344.61SpoU_methylase domain-containing protein n=1 Tax=T... [more]
A0A2E6CDK8_9BACT5.640e-2435.60RNA methyltransferase n=1 Tax=Gemmatimonadetes bac... [more]
R1ED08_EMIHU5.450e-1736.46SpoU_methylase domain-containing protein n=2 Tax=E... [more]
R1CTC7_EMIHU3.540e-1568.52Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2YLJ2_9STRA1.570e-1460.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2E2W0_9STRA5.450e-1468.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1BMN9_9STRA7.160e-1452.33Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A382QX96_9ZZZZ9.040e-1455.71SpoU_methylase domain-containing protein n=1 Tax=m... [more]
A0A0M0JXU3_9EUKA1.320e-1356.52tRNA rRNA methyltransferase n=1 Tax=Chrysochromuli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73687contigH-elongata_contig73687:97..1649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue3.5e-66
Seed eggNOG ortholog2880.D7G1M3
EggNOG free text desc.SpoU rRNA Methylase family
EggNOG OGs2S6AC@2759,COG0566@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size615
Cds size615
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73687.15061.1prot_H-elongata_contig73687.15061.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73687 97..1649 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.8834834-CDS-H-elongata_contig73687:96..1771622931140.8834834-CDS-H-elongata_contig73687:96..177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73687 97..177 +
1691679715.3462033-CDS-H-elongata_contig73687:96..1771691679715.3462033-CDS-H-elongata_contig73687:96..177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73687 97..177 +
1622931140.8983555-CDS-H-elongata_contig73687:603..10021622931140.8983555-CDS-H-elongata_contig73687:603..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73687 604..1002 +
1691679715.3599494-CDS-H-elongata_contig73687:603..10021691679715.3599494-CDS-H-elongata_contig73687:603..1002Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73687 604..1002 +
1622931140.9119258-CDS-H-elongata_contig73687:1514..16491622931140.9119258-CDS-H-elongata_contig73687:1514..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73687 1515..1649 +
1691679715.3724074-CDS-H-elongata_contig73687:1514..16491691679715.3724074-CDS-H-elongata_contig73687:1514..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73687 1515..1649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73687.15061.1

>prot_H-elongata_contig73687.15061.1 ID=prot_H-elongata_contig73687.15061.1|Name=mRNA_H-elongata_contig73687.15061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
RSADTARAAEVITCGYTPHPGGHGEDKVRKTAFGSIDAVAHRHFEDPVDA
VLSLRAAGAFVCALETTEGASSLFDVVFPLPSTPAGSSTRSDTSDGGAGR
SVDPGVSVERRASEAQGDKPLSGGTEAFELTRGGVVALVLGNEVTGVDER
VLGRCDLVVELPVFGLKNSLNVASAGTVALYEILRQWAEAGRLAGAGPKI
DLDP*
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mRNA from alignment at H-elongata_contig73687:97..1649+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73687.15061.1 ID=mRNA_H-elongata_contig73687.15061.1|Name=mRNA_H-elongata_contig73687.15061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1553bp|location=Sequence derived from alignment at H-elongata_contig73687:97..1649+ (Himanthalia elongata Himel1 dioecious)
AGATCGGCGGATACCGCGAGAGCAGCGGAGGTGATCACGTGCGGCTACAC GCCGCACCCGGGAGGACACGGGGAAGACAAGGTGTTTGAGGTTTAACCCC TATGGGACTTGATCTGTTTTTTATATACTAAATTCAATACAAAAGTTTAA ATCCAGTTCCAAAAGGGTTAAGCGCTTGCTACTACAACAGTAGAGGCGTG TTCGTTCATTTTTGGCGTGGGTTGGGCGGCGTTTAATGTCCTCTTGGCAT CGCGGGAGAGTTTTGAGGGGGCTTATCTCGCACTCAATGGATGGAATACG AAGTATTCATCACGCCCCGGGTCTCCTTGTGATGATTTCACACTTTGCAG GGACCCATGCGTGTAACACTCATAAGCACACTCGCGGACTCGAATGGAAT ACGTGGTTCCTGGCTGCGCTCGCTTGCTCCTCCTCCCACCTCCCCGGTCC CTTTCCAAAAAATGCCTCCATACGCTATTGGTTAACCCCCCCCCGCAACT ATAACAGGTGCGGAAGACGGCCTTCGGGAGCATAGACGCCGTGGCACATA GGCACTTCGAAGACCCGGTCGACGCTGTGTTGTCCCTCAGAGCCGCTGGA GCTTTCGTGTGCGCCCTCGAGACCACCGAGGGTGCGTCCTCACTCTTTGA CGTCGTCTTCCCTCTCCCTTCCACACCAGCCGGGAGTAGCACGCGATCAG ACACCTCGGACGGCGGGGCGGGGAGGAGCGTCGATCCTGGAGTATCGGTT GAGCGCCGAGCATCTGAAGCGCAGGGGGATAAACCTTTGTCAGGAGGGAC GGAGGCGTTTGAGTTGACCAGGGGCGGGGTCGTGGCTCTTGTGCTGGGGA ACGAAGTGACCGGCGTGGACGAGCGGGTGCTAGGGCGTTGCGATCTCGTC GTTGAGGTGAAAGGGGGGCCTGAATTTTGTTTAACCGCGCATAACTAGCT CTACAACCCCTCCGCCAAAACTTGACATTCATTTTTTCCTGGAGTAGCCC TTCCTGCCGTTAGTCCGCAGATTGTTACACACTGATGGGTGGAGAATGTG GCGCGCGTTGCCTTTGTACGTGGCGAGGTCGACGGCTCTCATGACGTGTC CATGGGTGTCTTGAGGCTAATGCTGAGCGAGGGCCTCGGCGTCGCTCTAC GCAACACACGAAGTCAAGACAAGACCAATTTGAAGTAGCATCCTCGATGC TCGAAGTACTCACAAACGATAATCCAACGCTATTCGCGCGTTATTGTTAT CACTTTAAGCGTTGACGTATTTCTCGTTTGAATGGTTGTTTAAAACCACC CCACCAAGTCTAGCAAGGGGCTGATGGGCCTCCTCCTCCCCCCCCCCTCC CCACCTCCCTTTTCTTTTCACGTACATCCACTGTTACACTCCGGAAAAAC CGCGGTGGGAATCAACAGCTCCCCGTCTTCGGGCTGAAGAACTCCCTCAA CGTAGCTTCGGCGGGCACGGTAGCGCTATACGAGATACTGAGGCAGTGGG CAGAAGCGGGTCGTCTGGCGGGCGCCGGCCCGAAGATCGATCTTGATCCG TGA
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Coding sequence (CDS) from alignment at H-elongata_contig73687:97..1649+

>mRNA_H-elongata_contig73687.15061.1 ID=mRNA_H-elongata_contig73687.15061.1|Name=mRNA_H-elongata_contig73687.15061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig73687:97..1649+ (Himanthalia elongata Himel1 dioecious)
AGATCGGCGGATACCGCGAGAGCAGCGGAGGTGATCACGTGCGGCTACAC
GCCGCACCCGGGAGGACACGGGGAAGACAAGAGATCGGCGGATACCGCGA
GAGCAGCGGAGGTGATCACGTGCGGCTACACGCCGCACCCGGGAGGACAC
GGGGAAGACAAGGTGCGGAAGACGGCCTTCGGGAGCATAGACGCCGTGGC
ACATAGGCACTTCGAAGACCCGGTCGACGCTGTGTTGTCCCTCAGAGCCG
CTGGAGCTTTCGTGTGCGCCCTCGAGACCACCGAGGGTGCGTCCTCACTC
TTTGACGTCGTCTTCCCTCTCCCTTCCACACCAGCCGGGAGTAGCACGCG
ATCAGACACCTCGGACGGCGGGGCGGGGAGGAGCGTCGATCCTGGAGTAT
CGGTTGAGCGCCGAGCATCTGAAGCGCAGGGGGATAAACCTTTGTCAGGA
GGGACGGAGGCGTTTGAGTTGACCAGGGGCGGGGTCGTGGCTCTTGTGCT
GGGGAACGAAGTGACCGGCGTGGACGAGCGGGTGCTAGGGCGTTGCGATC
TCGTCGTTGAGGTGCGGAAGACGGCCTTCGGGAGCATAGACGCCGTGGCA
CATAGGCACTTCGAAGACCCGGTCGACGCTGTGTTGTCCCTCAGAGCCGC
TGGAGCTTTCGTGTGCGCCCTCGAGACCACCGAGGGTGCGTCCTCACTCT
TTGACGTCGTCTTCCCTCTCCCTTCCACACCAGCCGGGAGTAGCACGCGA
TCAGACACCTCGGACGGCGGGGCGGGGAGGAGCGTCGATCCTGGAGTATC
GGTTGAGCGCCGAGCATCTGAAGCGCAGGGGGATAAACCTTTGTCAGGAG
GGACGGAGGCGTTTGAGTTGACCAGGGGCGGGGTCGTGGCTCTTGTGCTG
GGGAACGAAGTGACCGGCGTGGACGAGCGGGTGCTAGGGCGTTGCGATCT
CGTCGTTGAGCTCCCCGTCTTCGGGCTGAAGAACTCCCTCAACGTAGCTT
CGGCGGGCACGGTAGCGCTATACGAGATACTGAGGCAGTGGGCAGAAGCG
GGTCGTCTGGCGGGCGCCGGCCCGAAGATCGATCTTGATCCGTGACTCCC
CGTCTTCGGGCTGAAGAACTCCCTCAACGTAGCTTCGGCGGGCACGGTAG
CGCTATACGAGATACTGAGGCAGTGGGCAGAAGCGGGTCGTCTGGCGGGC
GCCGGCCCGAAGATCGATCTTGATCCGTGA
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