mRNA_H-elongata_contig7367.15059.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7367.15059.1
Unique NamemRNA_H-elongata_contig7367.15059.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7367.15059.1 vs. uniprot
Match: A0A6H5L995_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L995_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 3.260e-83
Identity = 148/213 (69.48%), Postives = 169/213 (79.34%), Query Frame = 3 
Query:  408 SASSSRKSFIERGALATIGGFA-IASTAPVVSEAAQFGGVEVRGIDVAEV--------LHPGAGGTG-KASKPLRDCLLNVERVRISTKQLEDTLTNEGPPPGLTGLVKGLVKNYKLDESLRQGALYIESQGDRNAAASAGREALEYLAQTIEYFPVELDERTGAPKRPSVEALEFTINALGATRGKLDLYLSKIPSDALREARAEIKAEGGD 1016
            S SSSR+ F+E GA+A +   A I    P V+          +GID++EV        +H GAG +G KA+KPLRDCLLNVERVRISTKQLEDTLTN+G PPGLTGLVKGL+KNYKLDESL+QGA YIES GDRN AASAGREALEYLAQT EYFPVE+D+RTGAPK+ S EALEFT+NAL ATR KLDL+LSK+PSDAL EARAEIK+EGGD
Sbjct:   58 SISSSRRGFLEGGAVALLASVAAIGLPEPSVA----------KGIDLSEVXXXXXXXXMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPGLTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAEYFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEARAEIKSEGGD 260
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BLAST of mRNA_H-elongata_contig7367.15059.1 vs. uniprot
Match: A0A7S2XY69_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY69_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.700e-20
Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 3 
Query:  573 GTGKASKPLRDCLLNVERVRISTKQLEDTLTNEGPPPGLTGLVKGLVKNYKLDESLRQGALYIESQGDRNAAASAGREALEYLAQTIEYFPVELDERTGAPKRPSV----EALEFTINALGATRGKLDLYLSKIPSDALREARAEIKAEGGDS 1019
            G  K +KPL +CL +V  V+++TKQLED +TN      +    + L++NYKL+E+LRQG  Y+ES  +R  A    +EALE L    EYFP   D  TG     S+    E ++F++ AL +T   L+ YLS +P + + + +  I  +  +S
Sbjct:  115 GKKKPTKPLEECLESVALVQLTTKQLEDDITNGQEIGDIPAQAQLLLRNYKLEENLRQGVQYLESNAERVEATKYAKEALEDLILITEYFPESYDNFTGKRLPSSLTLTPEKIKFSVKALSSTTKALEGYLSTMPVEMVAKVKQSIAEDMAES 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7367.15059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L995_9PHAE3.260e-8369.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XY69_9STRA1.700e-2037.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7367contigH-elongata_contig7367:1978..6643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue6.7e-07
Seed eggNOG ortholog159749.K0R908
EggNOG OGs2C1G4@1,2S3K1@2759,2XCB1@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007080.1
Exons3
Model size1298
Cds size840
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7367.15059.1prot_H-elongata_contig7367.15059.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7367 2254..6461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.5977259-UTR-H-elongata_contig7367:1977..22531622931140.5977259-UTR-H-elongata_contig7367:1977..2253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7367 1978..2253 -
1691679715.2146947-UTR-H-elongata_contig7367:1977..22531691679715.2146947-UTR-H-elongata_contig7367:1977..2253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7367 1978..2253 -
1622931140.6646476-UTR-H-elongata_contig7367:6461..66431622931140.6646476-UTR-H-elongata_contig7367:6461..6643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7367 6462..6643 -
1691679715.2545555-UTR-H-elongata_contig7367:6461..66431691679715.2545555-UTR-H-elongata_contig7367:6461..6643Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7367 6462..6643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.6219041-CDS-H-elongata_contig7367:2253..24131622931140.6219041-CDS-H-elongata_contig7367:2253..2413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7367 2254..2413 -
1691679715.2260861-CDS-H-elongata_contig7367:2253..24131691679715.2260861-CDS-H-elongata_contig7367:2253..2413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7367 2254..2413 -
1622931140.6379883-CDS-H-elongata_contig7367:3078..32931622931140.6379883-CDS-H-elongata_contig7367:3078..3293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7367 3079..3293 -
1691679715.237965-CDS-H-elongata_contig7367:3078..32931691679715.237965-CDS-H-elongata_contig7367:3078..3293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7367 3079..3293 -
1622931140.6498044-CDS-H-elongata_contig7367:5996..64611622931140.6498044-CDS-H-elongata_contig7367:5996..6461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7367 5997..6461 -
1691679715.2457905-CDS-H-elongata_contig7367:5996..64611691679715.2457905-CDS-H-elongata_contig7367:5996..6461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7367 5997..6461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7367.15059.1

>prot_H-elongata_contig7367.15059.1 ID=prot_H-elongata_contig7367.15059.1|Name=mRNA_H-elongata_contig7367.15059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
MYPTRFGRCTLALLIALTLSSASAFFAPRTSSSMVAQRLWQRGGSRNHQF
MKAIEHDTNNKAFDALATIRASSAASASSSRKSFIERGALATIGGFAIAS
TAPVVSEAAQFGGVEVRGIDVAEVLHPGAGGTGKASKPLRDCLLNVERVR
ISTKQLEDTLTNEGPPPGLTGLVKGLVKNYKLDESLRQGALYIESQGDRN
AAASAGREALEYLAQTIEYFPVELDERTGAPKRPSVEALEFTINALGATR
GKLDLYLSKIPSDALREARAEIKAEGGDS*
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mRNA from alignment at H-elongata_contig7367:1978..6643-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7367.15059.1 ID=mRNA_H-elongata_contig7367.15059.1|Name=mRNA_H-elongata_contig7367.15059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4666bp|location=Sequence derived from alignment at H-elongata_contig7367:1978..6643- (Himanthalia elongata Himel1 dioecious)
CTCTGCTCTCGGTGGACTGCACTGCTCCACCACTACGGAAACATTGGACG
ACCGCACTATTCTTTTTTACTGAATGTAGATGCAACACGCTGGTGGTAAT
CCCTGTGCTCTTCATCTGGATTACCGGCGAACTGAATTTGCTGACGTTGC
CTACTTTGTCCCCGACTCTAGCGGTTGGTATTATGTACCCTACGCGCTTC
GGACGCTGTACCCTCGCGCTTCTGATCGCCTTAACCCTATCTTCAGCAAG
CGCATTCTTCGCACCGAGAACGTCGTCATCAATGGTGGCGCAGCGTTTGT
GGCAGCGAGGAGGATCTCGAAATCATCAGTTCATGAAAGCAATTGAACAT
GACACTAATAATAAAGCATTCGATGCATTGGCAACTATAAGAGCATCTTC
AGCAGCGTCCGCTTCCTCGAGCAGGAAATCGTTTATCGAACGAGGGGCTT
TGGCGACGATAGGAGGGTTCGCAATCGCTTCCACTGCGCCCGTTGTCTCC
GAGGCAGCACAGTTTGGTGGAGTAGAAGTACGAGGGATCGACGTGGCTGA
GGTCCTTCATCCAGGGGCCGGGGGCACGGGGAAGGCATCGAAGCCGTTGC
GCGACTGCTTGCTCAACGTAGAGCGGGTTCGAATCTCCACCAAGCAGGTG
AACTCATGTCCTCCCATAAGTGCCGTGCGGATTTCGCGGTCGGTACAAAC
AGGGTCGCCGTTTTTATCTCCAGTGCTTCCTAGACTCGTACCTTAAACTT
TGGAGGTTTTCCCAGAAGTAACATCAGTAGTAGCTTTCACGGGGTCGGTG
CTCCTTTCGGCGAGAGCGCAATCTGTTTACCTGTTTGGGAGTATTTAACT
GATGAGGGAAAATTAATAACGTTAAGTAATAGCGAAAGTTCGAAAGTTTA
TTTGATCATCATTTCAACCGACGAGACCATTCATCACGACAGGTTACCAA
TCCCTCTTGTCGTGACGTCGCCAGCCTGTCTGTGGCATTAAGGGATCCAT
TCATTTCCTTTTCGGCTGGTTAATGCGATGTCAGTGCAAATAAAAATGCC
ATCAGAAAATGTTGATATTCGGAGGGTTGGTATGAGTTCAAGTTGTTTTT
TTATCAATATGCCTAAACGCTTTCCGCTGCAGCCTTTAGATATCCTTTAG
AAATTAAGTCAGGAATTCTCCACAACTGATGATGGTCGTGAAGGTTATTG
TACCAATTGAACTATTAATACCGCGACGCGATGGTAGCAGCGTAAAATTA
TATTACACATAATAATATCGGAATTGACCCGATGGCGGTTTGTTCGTAGA
GATGGACGCCGTCGCGGAAAACGGGAGGATCGAAAGGATCCCAGCCTGAT
TTTGGAAAATGAGCAGGCTGACGCGAAACGGGAGTGCTGAACCCGTCTCG
CGAGGCCAAATTATCAGGCGCAAACGGGGACACGGAAAATTATTTTCCCT
GTTCGGCTCCAAAAGCAGAAGGCAACCAAATCCGGTTGATCTTATGCTAA
ATGTGTGGCCAACAACAACAACAACATATGGTGTAAGTATCACACGAGCC
TTTCGAGCCTTTCTGAAGGTACCTTATTGTCGGAGTTCCATCGAAGGCAC
GTCGTCATGGCATATTGTACGTGCATCCTTCCGCCGCTTGCAAGCATCAA
GAAGCACACAACACGTCGAATTCGTACACGTGCCAAATTATTCCAAAATG
AACACAGCATCTTGATCTGCATTGTACCATTACAAACTCGGCGCCATGCC
AGTGCATAGCACATAATTTGCATTGTCGGTGGGCCCCTGCTACCAGCAGA
CATGGCGTAAGTGCACAGAATCTTAGAGAGTTCTTCCCGGCTTGCGATGC
TGGTTACCCAGGGCTCGCTTGGGGAATCAAATACAGGAAAGTGTTGTCTC
GGGTTATTTTCCAAAATAAAAATGCCGATGCGAAGGTTCTCCAAGGTATT
CCATCGGACACTTGAAGCGCGTACGTCAACTTGAGATCGCTGATAGTCAG
GCTTCGTTTTTTTTTTTAACACAAAAAGGAAAGCGAAGCACTAAAAGGGA
AAGACCGGACAAAAACACGTCTAACCCCTAATTTTTCTAAAGCACACGTA
TGTAACAGTATGGTGTGGAGTCCAGAGACGGTGTGTTGCGGCATCCACGC
AGGACGTTTGCAGCATTCACTGCTGCATAATCTAATAAACTCCCTGGGGG
GATGTTGTCAGTGTGGACCCAGAGTGCTGTATGGATGGTGAGTTAGTAAA
CTGCACAACAGTGTAAAGCAGTAGTGTGAAGCAGTGGGAAGTGGAACAAG
AAAGGGCTGGACACGATCGCGTGGCGCACCAAGCATAAATGATCCAACAC
GGACACACGCGATGTCAGCGCTACAAGCCACGAAACTCGTGCGGGACCAT
GGGCGTACATAACTGCTGCTCGTTGTTTTTTTTGGGGAAATCTCTAGCCA
GCTCAATAGCTATAGAACCGATTCGATTCCTTGACGCTTTGGCCGTTTGC
GAAAAACTCGGCCAAAAAAAGAGAACCCCCGAGGCAAAAATGGCGAGATT
ATCCTAGAAAAAATGCAAACGAAAAGAATTACCGTGTAAATCCGGGCCAG
AAAAAGACCACATCAAGAATCCCACCCTCTGCTAAAAACCTTCTACCTCT
TCCCCACCCCACCCCCTCCCTGTGTTCACATTCACCCCACTTGACACGTG
TTCCCATTTTTTGTTCCGTTTCAATAACTTCATATTAGTATAGAGCTAAT
AGTTTGCCTTCCGGGAGAGTCTCTTCGCTTTTTTAGTCGTTTTACGTGAA
ACCGCGTGGTTTGGGTAGAAACAGAGTTCCCGTTTGTTTCCAGGAAACTA
GGTCGGTACTGCGCAGTCTGCGATTTTGGAAATATAAGGGCGAGGCCCGT
AAACCAAAGGGGGACTATGATACGTCGTCTGCATCTTCACTGTTGCGGAA
CAATTTTATCAGGGGACACCGATCCCCACGATAGAGGGAGTGTTTATTGC
TTAATACCCTGGCACCTGCCGTGGTACTAGGATTATCATCAGCTTTGCAG
CGTGTTTCGGCTGATAATCAACCACGACTATGCCATCCGACATTCCTTGT
GTAGCGGTAAAATAATTCCATCAGAAGGATGCCGTCATCGACCGCGCAGC
CCTCCTCCGATGATATTTGGTCATTCTATCCACCTCATGTCCAGAACGCG
TGGTAACTCACTGGTTTAACAGGTTAGGCATGCAACCCTTGAGCACATCT
ACACGTTTTCCCCCAACATGTCAAGGCTCCATCGTCATCACCAACGAGTG
CAGCGTCTCGCTCGTTCGTTGGACATTCTCCCATCCGTTGGAGCGCGCAG
TTGGAGGATACCTTAACGAATGAAGGTCCACCCCCGGGCCTCACTGGTCT
GGTAAAGGGGCTTGTCAAGAACTACAAGCTTGATGAGAGTCTTCGGCAGG
GGGCGTTGTACATCGAGTCCCAGGGCGATAGGAACGCCGCCGCGTCGGCA
GGGCGGGAGGCACTGGAGTACCTTGCCCAGACTATCGAGTACTTCCCTGT
GGAGTTGGACGAGAGGTGTGTATTCCTTGAGATGGGGAGGGTAATGAAAT
GTCGGTGATCGATGACCCAGACGCTATTATAGGGACAAAAGAGAGTTAAT
TCTCTCCCGATGGCGACTCCAGAATTCGTTGCTTCGATAATGGTAGTCAT
CGGTTGGTGGGACTCTGACAAGCCACGCATCACGTTGTCCGAACGCAACG
CCGTGAGTCAGGTGTCCCTTCGCCATGCCGGTGTGCTGAATCTTCCTCTA
ATTTGATTCGCTTCTGGAACGTAGCGCGAATCGTATTTTCCCATCCCGTT
TCGAACACAACTCCGACACGAACGGCGCCAGAGAATATCCTCCACGAATG
GACATTTTATGTCCTCAGACCCCGCCTCTCCAGAGTTCTTAGTAATCACT
CGAAGTAACGACAACATCTTCCGCATAGTGGGTCTTGGTGCAGGATAATT
GCACCCTTGATATAAGAGCGGACGGGGAAACATTTATGCGCCACCTTTGG
ATGAAGGAGAACGATTGGCCATCGGCGATCGATCGTGTAGGAGCAGTGCT
CCGTCCTCCCTAGGAAGCGTGGTCAATAGATCAATGGTCTAATAGTTTAA
CAGCGAAGGCATCCAAACCTTGAGTACGCCCCCCACCCCCCCCTCGTTCC
TGGCTTCGAATCCGCCTGCTGCGGCTGTAGGACCGGGGCGCCCAAACGGC
CGAGCGTTGAGGCGCTAGAATTCACCATCAATGCGCTCGGTGCCACGAGA
GGAAAGCTAGACTTGTACTTATCGAAGATACCCTCCGACGCTCTGCGGGA
GGCGCGAGCAGAGATCAAGGCGGAGGGTGGCGACAGTTGAAGTATTGCGG
TTATTTCGACATGGATGGACATGTTGTTGAATGACCATCCGTCTCAAGAG
CCGTTTTGCTGCTGCTGCCGCTATTGTTAACTCGTTGGGTGATGGAGTAT
ATTCGAAATATACAGCCTGCTGTGTGGTTCCTTGGCGATATATTGGTTGC
CCTGATGGGAGAATTATAGCTGCCGGGTAGAAGATTAAAAAAAAAAAACG
TTTACCTCGATACCGAAATTTAGCGCATTGCCCGAGACTTTGCTCGAAAA
CTTAAAAATAGGACAA
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Coding sequence (CDS) from alignment at H-elongata_contig7367:1978..6643-

>mRNA_H-elongata_contig7367.15059.1 ID=mRNA_H-elongata_contig7367.15059.1|Name=mRNA_H-elongata_contig7367.15059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig7367:1978..6643- (Himanthalia elongata Himel1 dioecious)
ATGTACCCTACGCGCTTCGGACGCTGTACCCTCGCGCTTCTGATCGCCTT
AACCCTATCTTCAGCAAGCGCATTCTTCGCACCGAGAACGTCGTCATCAA
TGGTGGCGCAGCGTTTGTGGCAGCGAGGAGGATCTCGAAATCATCAGTTC
ATGAAAGCAATTGAACATGACACTAATAATAAAGCATTCGATGCATTGGC
AACTATAAGAGCATCTTCAGCAGCGTCCGCTTCCTCGAGCAGGAAATCGT
TTATCGAACGAGGGGCTTTGGCGACGATAGGAGGGTTCGCAATCGCTTCC
ACTGCGCCCGTTGTCTCCGAGGCAGCACAGTTTGGTGGAGTAGAAGTACG
AGGGATCGACGTGGCTGAGGTCCTTCATCCAGGGGCCGGGGGCACGGGGA
AGGCATCGAAGCCGTTGCGCGACTGCTTGCTCAACGTAGAGCGGGTTCGA
ATCTCCACCAAGCAGATGTACCCTACGCGCTTCGGACGCTGTACCCTCGC
GCTTCTGATCGCCTTAACCCTATCTTCAGCAAGCGCATTCTTCGCACCGA
GAACGTCGTCATCAATGGTGGCGCAGCGTTTGTGGCAGCGAGGAGGATCT
CGAAATCATCAGTTCATGAAAGCAATTGAACATGACACTAATAATAAAGC
ATTCGATGCATTGGCAACTATAAGAGCATCTTCAGCAGCGTCCGCTTCCT
CGAGCAGGAAATCGTTTATCGAACGAGGGGCTTTGGCGACGATAGGAGGG
TTCGCAATCGCTTCCACTGCGCCCGTTGTCTCCGAGGCAGCACAGTTTGG
TGGAGTAGAAGTACGAGGGATCGACGTGGCTGAGGTCCTTCATCCAGGGG
CCGGGGGCACGGGGAAGGCATCGAAGCCGTTGCGCGACTGCTTGCTCAAC
GTAGAGCGGGTTCGAATCTCCACCAAGCAGTTGGAGGATACCTTAACGAA
TGAAGGTCCACCCCCGGGCCTCACTGGTCTGGTAAAGGGGCTTGTCAAGA
ACTACAAGCTTGATGAGAGTCTTCGGCAGGGGGCGTTGTACATCGAGTCC
CAGGGCGATAGGAACGCCGCCGCGTCGGCAGGGCGGGAGGCACTGGAGTA
CCTTGCCCAGACTATCGAGTACTTCCCTGTGGAGTTGGACGAGAGTTGGA
GGATACCTTAACGAATGAAGGTCCACCCCCGGGCCTCACTGGTCTGGTAA
AGGGGCTTGTCAAGAACTACAAGCTTGATGAGAGTCTTCGGCAGGGGGCG
TTGTACATCGAGTCCCAGGGCGATAGGAACGCCGCCGCGTCGGCAGGGCG
GGAGGCACTGGAGTACCTTGCCCAGACTATCGAGTACTTCCCTGTGGAGT
TGGACGAGAGGACCGGGGCGCCCAAACGGCCGAGCGTTGAGGCGCTAGAA
TTCACCATCAATGCGCTCGGTGCCACGAGAGGAAAGCTAGACTTGTACTT
ATCGAAGATACCCTCCGACGCTCTGCGGGAGGCGCGAGCAGAGATCAAGG
CGGAGGGTGGCGACAGTTGAGACCGGGGCGCCCAAACGGCCGAGCGTTGA
GGCGCTAGAATTCACCATCAATGCGCTCGGTGCCACGAGAGGAAAGCTAG
ACTTGTACTTATCGAAGATACCCTCCGACGCTCTGCGGGAGGCGCGAGCA
GAGATCAAGGCGGAGGGTGGCGACAGTTGA
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