mRNA_H-elongata_contig73663.15057.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73663.15057.1
Unique NamemRNA_H-elongata_contig73663.15057.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73663.15057.1 vs. uniprot
Match: D7G6S5_ECTSI (Hydrolase, alpha/beta fold family protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6S5_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 8.160e-56
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1 
Query:   19 PPEELKDGYFERPTPLLLVAGEAQPPAWWSRTASFFAARGCTVGTMALSGRGSSFEDVLTLKALQAGVAMAVANSGLTPPVLVAYSIAGFVCQQYLQSYPAAGLVLLDSFPPKP 360
            PPE+L+DGYFERPTPLLLVAGE QP AWW  T SFFA+RGCTVGTMAL+GRGSS  D LTL+ALQAGVA AV  SGLTPPV++A+S+AGFVCQQYLQSY A+GLVLL+SFPP P
Sbjct:    2 PPEDLEDGYFERPTPLLLVAGEGQPAAWWKDTTSFFASRGCTVGTMALTGRGSSPTDTLTLRALQAGVAAAVDQSGLTPPVIMAHSMAGFVCQQYLQSYSASGLVLLESFPPSP 115
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BLAST of mRNA_H-elongata_contig73663.15057.1 vs. uniprot
Match: A0A6H5J608_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J608_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.140e-52
Identity = 91/120 (75.83%), Postives = 100/120 (83.33%), Query Frame = 1 
Query:    1 AATFIAPPEELKDGYFERPTPLLLVAGEAQPPAWWSRTASFFAARGCTVGTMALSGRGSSFEDVLTLKALQAGVAMAVANSGLTPPVLVAYSIAGFVCQQYLQSYPAAGLVLLDSFPPKP 360
            A  F  PP  L DGYFE+PTPLLLVAGE +P AWW  T SFFA+RGCTVGTMAL+GRGSS  D LTL+ALQAGVA AV  SGLTPPV+VA+S+AGFVCQQYLQSY A+GLVLLDSFPP P
Sbjct:   65 AIDFAVPPAVLDDGYFEKPTPLLLVAGEGRPAAWWKDTTSFFASRGCTVGTMALTGRGSSPTDTLTLRALQAGVAAAVDKSGLTPPVIVAHSMAGFVCQQYLQSYSASGLVLLDSFPPAP 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73663.15057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6S5_ECTSI8.160e-5678.95Hydrolase, alpha/beta fold family protein, putativ... [more]
A0A6H5J608_9PHAE1.140e-5275.83AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73663contigH-elongata_contig73663:309..1432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73663.15057.1prot_H-elongata_contig73663.15057.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73663 309..1432 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.439635-CDS-H-elongata_contig73663:308..3861622931140.439635-CDS-H-elongata_contig73663:308..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73663 309..386 -
1691679715.16991-CDS-H-elongata_contig73663:308..3861691679715.16991-CDS-H-elongata_contig73663:308..386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73663 309..386 -
1622931140.46056-CDS-H-elongata_contig73663:588..7691622931140.46056-CDS-H-elongata_contig73663:588..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73663 589..769 -
1691679715.178524-CDS-H-elongata_contig73663:588..7691691679715.178524-CDS-H-elongata_contig73663:588..769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73663 589..769 -
1622931140.4799895-CDS-H-elongata_contig73663:1331..14321622931140.4799895-CDS-H-elongata_contig73663:1331..1432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73663 1332..1432 -
1691679715.1869802-CDS-H-elongata_contig73663:1331..14321691679715.1869802-CDS-H-elongata_contig73663:1331..1432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73663 1332..1432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73663.15057.1

>prot_H-elongata_contig73663.15057.1 ID=prot_H-elongata_contig73663.15057.1|Name=mRNA_H-elongata_contig73663.15057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
AATFIAPPEELKDGYFERPTPLLLVAGEAQPPAWWSRTASFFAARGCTVG
TMALSGRGSSFEDVLTLKALQAGVAMAVANSGLTPPVLVAYSIAGFVCQQ
YLQSYPAAGLVLLDSFPPKP
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mRNA from alignment at H-elongata_contig73663:309..1432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73663.15057.1 ID=mRNA_H-elongata_contig73663.15057.1|Name=mRNA_H-elongata_contig73663.15057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1124bp|location=Sequence derived from alignment at H-elongata_contig73663:309..1432- (Himanthalia elongata Himel1 dioecious)
GCGGCAACCTTCATTGCGCCTCCCGAAGAGCTAAAGGACGGCTACTTCGA
GAGACCGACCCCTTTGCTCTTGGTAGCAGGCGAGGCCCAGCCCCCAGCTT
GGTAAGCGTCTACATTAGAGCATGTCATGGTCCCGAATTTCGAAGCATGT
ACTATAGTATACTAAAATACTGTACCCCAGTACATCAAACGGTATACTGT
ACTATACTATATCATATTATACTATACTACTGTATAAGATACCATATATG
ACATTCGGTACGTAGATGGCGTTTCTTGTGTTCACCGATCGCTGAAGTCG
TCGAGGCAATCCGCCAGAGGGTGTGTAGTTGGGTTTGCATTGCTAGATTC
TACAGCATTTGCGATTCAGTATATGTTACCTCCCTTATATATGTATATAT
ATATACGAAGTATGAACTAAATACATGATTACACTATTTAAGCCTCTGCT
AATATCACACCTCTTGAGAGGGTTGTTTACTGCCTTAATGCCTCTCGCGT
CCATCATTTCCCTTCGTCTGAAAAGACTGTGTTCACAGCCCGTCCGCCTA
CTGTACCTTGCTCTGTGTTGACGGCCGCCTAGACAAAGCGGGGAGTTCGT
GACGTTGAGGGCCTAGCATAAATGTATCGCGGTACATTTGCGTTTTGATT
TCCTTCGGGGTAGGTGGAGTCGCACAGCATCATTCTTCGCTGCTAGAGGA
TGTACCGTAGGGACTATGGCCCTCTCCGGCCGAGGAAGCTCCTTTGAAGA
TGTGCTTACGCTGAAGGCACTGCAGGCCGGTGTGGCCATGGCTGTCGCCA
ACAGTGGTCTTACTCCTCCGGTGCTGGTAGCATATTCGATAGCGGTGAGC
CAACCCCAACCTGCGCACCATTAGCTCGCACAGCATCCCGGCGTCCTTCA
TTACAAGAATATACTTGGAAGTACAGTAGTTTGTAACCGCTATGCCAGGC
TCTCTTTGATTTCGACCGTTTCTGTCTCAGCAAACGGCACCTGAACTGTT
TCTCGGGGAATCTTTACATTTTCGGTGTTACCTTGCCTCATCACAGGGGT
TCGTCTGTCAGCAGTACCTGCAGTCTTACCCTGCCGCTGGATTGGTGCTG
CTGGATTCCTTTCCACCGAAGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig73663:309..1432-

>mRNA_H-elongata_contig73663.15057.1 ID=mRNA_H-elongata_contig73663.15057.1|Name=mRNA_H-elongata_contig73663.15057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig73663:309..1432- (Himanthalia elongata Himel1 dioecious)
GCGGCAACCTTCATTGCGCCTCCCGAAGAGCTAAAGGACGGCTACTTCGA
GAGACCGACCCCTTTGCTCTTGGTAGCAGGCGAGGCCCAGCCCCCAGCTT
GGCGGCAACCTTCATTGCGCCTCCCGAAGAGCTAAAGGACGGCTACTTCG
AGAGACCGACCCCTTTGCTCTTGGTAGCAGGCGAGGCCCAGCCCCCAGCT
TGGTGGAGTCGCACAGCATCATTCTTCGCTGCTAGAGGATGTACCGTAGG
GACTATGGCCCTCTCCGGCCGAGGAAGCTCCTTTGAAGATGTGCTTACGC
TGAAGGCACTGCAGGCCGGTGTGGCCATGGCTGTCGCCAACAGTGGTCTT
ACTCCTCCGGTGCTGGTAGCATATTCGATAGCGGTGGAGTCGCACAGCAT
CATTCTTCGCTGCTAGAGGATGTACCGTAGGGACTATGGCCCTCTCCGGC
CGAGGAAGCTCCTTTGAAGATGTGCTTACGCTGAAGGCACTGCAGGCCGG
TGTGGCCATGGCTGTCGCCAACAGTGGTCTTACTCCTCCGGTGCTGGTAG
CATATTCGATAGCGGGGTTCGTCTGTCAGCAGTACCTGCAGTCTTACCCT
GCCGCTGGATTGGTGCTGCTGGATTCCTTTCCACCGAAGCCAGGGTTCGT
CTGTCAGCAGTACCTGCAGTCTTACCCTGCCGCTGGATTGGTGCTGCTGG
ATTCCTTTCCACCGAAGCCA
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