mRNA_H-elongata_contig73656.15054.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73656.15054.1
Unique NamemRNA_H-elongata_contig73656.15054.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.140e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCGSDNLIK KDPIQCRQCGYRIMYKKRTKRLIQFEAR
Sbjct:   31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A197K819_9FUNG (DNA-directed RNA polymerase I n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K819_9FUNG)

HSP 1 Score: 73.9 bits (180), Expect = 5.000e-13
Identity = 30/38 (78.95%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            +CGSDN IKPK+PI+C++CGYRIMYKKRTKR++QFEAR
Sbjct:   24 ECGSDNEIKPKEPIRCKECGYRIMYKKRTKRMVQFEAR 61
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A1Y1WJV6_9FUNG (Uncharacterized protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJV6_9FUNG)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-12
Identity = 29/38 (76.32%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCG+DN IKPK+PI+CR+CGYRI+YKKRTK+++QFEAR
Sbjct:   23 DCGADNDIKPKEPIRCRECGYRILYKKRTKKMVQFEAR 60
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A836C8S5_9STRA (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.650e-12
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCG+ N IK KDPIQCR CGYRIMYK RTKRLIQFEAR
Sbjct:   21 DCGTTNEIKAKDPIQCRSCGYRIMYKMRTKRLIQFEAR 58
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BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A2R6WQG7_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WQG7_MARPO)

HSP 1 Score: 70.1 bits (170), Expect = 9.790e-12
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCG+DN +KP D IQCR+CGYRI+YKKRT+R++QFEAR
Sbjct:   18 DCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 55
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A139A9U2_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A9U2_GONPJ)

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-11
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            +CG+DN +KPK+PI+C  CGYRIMYKKRTKR++QFEAR
Sbjct:   19 ECGADNELKPKEPIRCTNCGYRIMYKKRTKRMVQFEAR 56
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A9U0K9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U0K9_PHYPA)

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-11
Identity = 28/38 (73.68%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCG+DN +KP D IQCR+CGYRI+YKKRT+R++QFEAR
Sbjct:   19 DCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A1Y1VGP6_9FUNG (Uncharacterized protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VGP6_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 1.030e-11
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCG +N I+PK+PI+C++CGYRIMYKKRTKR++QFEAR
Sbjct:   20 DCGVENDIRPKEPIRCKECGYRIMYKKRTKRMVQFEAR 57
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A5C2SFF4_9APHY (Uncharacterized protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2SFF4_9APHY)

HSP 1 Score: 70.5 bits (171), Expect = 1.110e-11
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCGS N IKP++PI+CRQCG+RIMYKKRT R++QFEAR
Sbjct:   35 DCGSSNEIKPREPIRCRQCGHRIMYKKRTNRMVQFEAR 72
[Close]
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Match: A0A371DKT3_9APHY (Uncharacterized protein n=2 Tax=Polyporus TaxID=5637 RepID=A0A371DKT3_9APHY)

HSP 1 Score: 70.5 bits (171), Expect = 1.170e-11
Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR 114
            DCGS N IKP++PI+CRQCG+RIMYKKRT R++QFEAR
Sbjct:   37 DCGSSNEIKPREPIRCRQCGHRIMYKKRTNRMVQFEAR 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73656.15054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI1.140e-1597.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A197K819_9FUNG5.000e-1378.95DNA-directed RNA polymerase I n=1 Tax=Linnemannia ... [more]
A0A1Y1WJV6_9FUNG1.240e-1276.32Uncharacterized protein n=1 Tax=Linderina pennispo... [more]
A0A836C8S5_9STRA5.650e-1284.21DNA-directed RNA polymerases I, II, and III 7.0 kD... [more]
A0A2R6WQG7_MARPO9.790e-1273.68Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A139A9U2_GONPJ1.000e-1173.68Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A9U0K9_PHYPA1.000e-1173.68Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1Y1VGP6_9FUNG1.030e-1173.68Uncharacterized protein n=1 Tax=Piromyces finnis T... [more]
A0A5C2SFF4_9APHY1.110e-1176.32Uncharacterized protein n=2 Tax=Lentinus tigrinus ... [more]
A0A371DKT3_9APHY1.170e-1176.32Uncharacterized protein n=2 Tax=Polyporus TaxID=56... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73656contigH-elongata_contig73656:235..2702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue8.7e-14
Seed eggNOG ortholog2880.D8LHK5
Preferred namePOLR2K
KEGG rclassRC02795
KEGG koko:K03009,ko:K09122
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0000902,GO:0000904,GO:0003006,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009304,GO:0009452,GO:0009653,GO:0009719,GO:0009826,GO:0009856,GO:0009860,GO:0009889,GO:0009893,GO:0009932,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010628,GO:0016043,GO:0016049,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0023052,GO:0030154,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032989,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040007,GO:0040029,GO:0042221,GO:0042795,GO:0042797,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044706,GO:0045815,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048518,GO:0048588,GO:0048589,GO:0048856,GO:0048868,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051704,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060560,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.Psort location Cytoplasmic, score
EggNOG OGsCOG1996@1,KOG3507@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size1484
Cds size117
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73656.15054.1prot_H-elongata_contig73656.15054.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73656 1601..2702 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.0060925-UTR-H-elongata_contig73656:234..16001622931140.0060925-UTR-H-elongata_contig73656:234..1600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73656 235..1600 -
1691679715.0204198-UTR-H-elongata_contig73656:234..16001691679715.0204198-UTR-H-elongata_contig73656:234..1600Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73656 235..1600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.024852-CDS-H-elongata_contig73656:1600..16231622931140.024852-CDS-H-elongata_contig73656:1600..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73656 1601..1623 -
1691679715.0341456-CDS-H-elongata_contig73656:1600..16231691679715.0341456-CDS-H-elongata_contig73656:1600..1623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73656 1601..1623 -
1622931140.0477989-CDS-H-elongata_contig73656:2608..27021622931140.0477989-CDS-H-elongata_contig73656:2608..2702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73656 2609..2702 -
1691679715.0431063-CDS-H-elongata_contig73656:2608..27021691679715.0431063-CDS-H-elongata_contig73656:2608..2702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73656 2609..2702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73656.15054.1

>prot_H-elongata_contig73656.15054.1 ID=prot_H-elongata_contig73656.15054.1|Name=mRNA_H-elongata_contig73656.15054.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
DCGSDNLIKPKDPIQCRQCGYRIMYKKRTKRLIQFEAR*
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mRNA from alignment at H-elongata_contig73656:235..2702-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73656.15054.1 ID=mRNA_H-elongata_contig73656.15054.1|Name=mRNA_H-elongata_contig73656.15054.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2468bp|location=Sequence derived from alignment at H-elongata_contig73656:235..2702- (Himanthalia elongata Himel1 dioecious)
GACTGCGGATCTGACAACCTTATCAAGCCGAAGGATCCTATCCAGTGTCG
TCAGTGCGGCTACCGTATCATGTACAAGAAACGCACCAAACGATGTGAGT
ACGTGTCAGGGCCGAAAAGGAACCAAGTCTCGTTGTGCCCTTATCGTACC
GAGAACAATGGTCATGACGTCATCATATATTATAGCAGAGTAAGATCAAC
CGGATTTGGTTGCGCGCTTCCTGCTCGTGGTCAGCTGAACAGGGGAAACT
AATTTTCCCCTGTCCCCGTTCGCACCTGAGAGTTTGGTTTTACGAGACGG
GCTCTCAGCCGTCCCGTCCCGGCTTGCTCATTCTCTCAAACTAGGCTGAA
TCTGATGTGTATTCCCGAGATCCTCTCGACCCTCTCGTTCTCTACCGTCA
ACCGTTATCGGGTCAATCACAATTTCATCAGGTCACGCAATTGCGTATCA
ATGGTGTTTACCACCGAGATCCCGCCGACACTTAGCCAGTAGTCCTCAAG
GTAGCTTGAGTAACGGGTGCAGCCTATTCAGATAACCCCCTGGACTACTT
ATTGTGCGCATCTCTATTTTATATTTTCCCACACCGACTACCGGTAAGAA
GAGTGGACATGTGTGATAACAGTTACATACAGTATCGGAGGCTGTTAAGG
TTCAACCATTGGGCTTTACCCAAGGTTTGAAGAGTAAATAAGGTGTTGTA
GTGTAGTAGGCGAGCTCAACCCGGGGATAGGGGGAGGGGGGGGATTGGTA
AACTAACCTAATAATAATAAAATAGCACGTTTGAATAAGCCCCCATCGTC
TGCAGAAAGAAAATGAGATCAAGCAAGAGCAAAAAATGTACTATGTATAT
TACTAATGTGGCTAGAGATTGATAGGTAAACCACACTCGGTGGTAGCGCA
GCGCATTGATTGGAAACTAATACTAACTCATCGCCAAAAAGTGCGAGGAA
AAAAAAGTGCAAATAATAACCCGAAGAGCATCGTCGCGCCGCCTGAGACC
TAAGCAGCCCTCCTCGCCCCCCACCTCCTCGAACCCCTTCCTTACTTATA
CCCAAACTCTTGGCTCTCGTTTTGCGCAGTGATTCAGTTCGAGGCACGAT
GAAAAAGGAGGATGTTACTGAGTCGGCGCATGAACTATCCACCCAGAGCT
TCACTTCATGCGTTGTCCAAGAGCAGCACGCTCGGCAAAATAAACGGTCT
GCCCCTCGGAGAGCATCGAGCACGCACGCACTCGTGGAGATAGATCATCG
TTTTCTTTTAGCAAGAAAGCGTCTCCGGGTTATTCGACACGCACTCAATC
CCGCACCGGTGTCTCTCACCCGTTCGCTTCCGCGCGCATTGCCGTGTGGG
TGACGGTGGGGGGGGTATATTTTGTAGGTTCTCATAGATTATGACATTTG
TGTGCTGCGCAATAACAGCGGCAGATGATAAGTTGCACATCCTGTAGGCG
ACGGGAGCTGTTTCGATATGCGGTGTGTTCATCCAACACACCCTCAAGAG
CAGTGGACTGGCCATACCGTGTACGTTAGTGGATTTGGCTCGGGTTGGCG
ACTGGCGGCCTTAAGGTGGCGGCAAGCGAGGAATGAAACAAGCAGCCTTG
AGTTCCATGTAAAGTCACGAAACTAGTAATGGCATCGGTTTTTGTCTCGC
TACTGTGCCTGGCGAGTGGACGCGCTGCACGCCAACGTATCCAAATCGGT
TAAGCACCGAGTTGAGAGAATGACAATGTTTGTACACTTCTGCTGTACAG
TAGGTACCATATTTCTCCGGGACCGAAGGAGGGGGTGGATTCACACTAGT
GTCCCCGGTTTGGGGAAGGGAAGATCAAACTTCTTTCCCTTCTGGGGATA
CTATCGTCGCATCCCCGACCGTAGCTTTGGGATTAATTATTAACGTCGAA
GGAGGGGATGGGTGAGTTTTCCCCCCGAAAAGAGACAAATTTAAGATGTC
TCCCCTCCCTGAATCGGGGACGTTTGCGCAATTCCCCTTACCCCCGCATC
ATTTTATCGTTAGACTAATCACTGGGCATCAAGCGGGGTTGCCACAACCG
GCGGCCCTTCACGACAGTCTCGATCATTTAAACGAAGTATTTACGTACGC
AAGTGAAGTAATCAAGACACGAGAATTAAGAGGCTTGTCTCGCCACCAAC
TACGACACTGTTAACCCCAAGGCATAGCGCCAATGTCGCCGAGCGTACTG
GAGAGGAATAGTTTTCGGCAGCGAAATAGAAGATGGCGGTGTTGACGGCG
GGAGTCGGGAGTATGTTTGTTTTGTATAAGTGTTAAGTTATAATTTTTCA
CCAAACCCCGACTGCCTTCAAATAAAAACAAGCCTCCTTCATATATCTAG
AGGTGACCGATTTATCACGAAATATGCTTGGAGGATATTGATGGATGCGG
AGTCGAGTACCTGCTTTTTCTTGTGCCGTTTGTGAAATCTTTAGCGCAGC
AGCCACCTTCGTATTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73656:235..2702-

>mRNA_H-elongata_contig73656.15054.1 ID=mRNA_H-elongata_contig73656.15054.1|Name=mRNA_H-elongata_contig73656.15054.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig73656:235..2702- (Himanthalia elongata Himel1 dioecious)
GACTGCGGATCTGACAACCTTATCAAGCCGAAGGATCCTATCCAGTGTCG
TCAGTGCGGCTACCGTATCATGTACAAGAAACGCACCAAACGATGACTGC
GGATCTGACAACCTTATCAAGCCGAAGGATCCTATCCAGTGTCGTCAGTG
CGGCTACCGTATCATGTACAAGAAACGCACCAAACGATTGATTCAGTTCG
AGGCACGATGATGATTCAGTTCGAGGCACGATGA
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