mRNA_H-elongata_contig7365.15053.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7365.15053.1
Unique NamemRNA_H-elongata_contig7365.15053.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: D7FLK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK0_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.190e-50
Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQWRSIGQSPFSDECLIRLT------------------GIYLNCTYEEDLSEASVQTRFY 315
            D VFED+NWWA+ D+SGANTFL  PYFPFLSSCAGYGNHMSF+KLVESHP CTLIPYEQTKAI+QWRSIG+SPFSDECL++LT                  G+YL+CTYEED+S AS Q R++
Sbjct: 12929 DDVFEDSNWWASGDDSGANTFLTTPYFPFLSSCAGYGNHMSFSKLVESHPGCTLIPYEQTKAINQWRSIGKSPFSDECLVQLTSEERYDDDGNLLIAEETRGVYLDCTYEEDISMASAQRRWF 13051
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BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A6H5J8V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V0_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 2.980e-50
Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    7 VFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQWRSIGQSPFSDECLIRLT------------------GIYLNCTYEEDLSEASVQTRFY 315
            VFED+NWWA+ D+SGANTFL  PYFPFLSSCAGYGNHMSF+KLVESHP CTLIPYEQTKAI+QWRSIG+SPFSDECL++LT                  G+YL+CTYEED+S AS Q R++
Sbjct:  861 VFEDSNWWASGDDSGANTFLTTPYFPFLSSCAGYGNHMSFSKLVESHPGCTLIPYEQTKAINQWRSIGKSPFSDECLVQLTSEERYDDDGNLLITGETRGVYLDCTYEEDISMASAQRRWF 981
[Close]
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A836CCN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN3_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.320e-34
Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:    7 VFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQWRSIGQSPFSDECLIRLT-----GIYLNCTYEEDLSEASVQTRFY 315
            VF DA+WW + D SG NTFLA+PY PF S+CAGYG H+SFAKLVE HP C  + YE TKAI+QW S+G  P  D    R+T     G+YLNCTYEE +   S +TR++
Sbjct: 11105 VFRDASWWMSGDPSGENTFLAVPYLPFFSNCAGYGAHLSFAKLVEQHPSCNRVKYESTKAINQWTSVGGKPMYDAKGRRITPDTTRGVYLNCTYEEQVVTPSAKTRWF 11212
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BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A3L6VUR9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VUR9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.270e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQ--WRSIGQSPFSDEC-LIRLTGIYLNCTYEEDLSEASVQTRFY 315
            D  F DA WW     +G  T+LAMPY PF S+CAGY +HMS AKL+ESHPDC  + Y  T  + +  WR +   P +DEC L  L GI L C +EE+L+  S + R+Y
Sbjct:  560 DVAFSDA-WWLKAQPNGL-TYLAMPYLPFFSACAGYDSHMSIAKLLESHPDCDFVEYNATHEVDELIWRKMTV-PLADECSLFNLNGIDLQCVFEENLAGGSDKPRWY 664
[Close]
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A3R6ZFC7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZFC7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.310e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQ--WRSIGQSPFSDEC-LIRLTGIYLNCTYEEDLSEASVQTRFY 315
            D  F DA WW     +G  T+LAMPY PF S+CAGY +HMS AKL+ESHPDC  + Y  T  + +  WR +   P +DEC L  L GI L C +EE+L+  S + R+Y
Sbjct:  631 DVAFSDA-WWLKAQPNGL-TYLAMPYLPFFSACAGYDSHMSIAKLLESHPDCDFVEYNATHEVDELIWRKMTV-PLADECSLFNLNGIDLQCVFEENLAGGSDKPRWY 735
[Close]
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A6A4ZZ92_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZZ92_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.330e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQ--WRSIGQSPFSDEC-LIRLTGIYLNCTYEEDLSEASVQTRFY 315
            D  F DA WW     +G  T+LAMPY PF S+CAGY +HMS AKL+ESHPDC  + Y  T  + +  WR +   P +DEC L  L GI L C +EE+L+  S + R+Y
Sbjct: 1346 DVAFSDA-WWLKAQPNGL-TYLAMPYLPFFSACAGYDSHMSIAKLLESHPDCDFVEYNATHEVDELIWRKMTV-PLADECSLFNLNGIDLQCVFEENLAGGSDKPRWY 1450
[Close]
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A397C3T7_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C3T7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.830e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQ--WRSIGQSPFSDEC-LIRLTGIYLNCTYEEDLSEASVQTRFY 315
            D  F DA WW     +G  T+LAMPY PF S+CAGY +HMS AKL+ESHPDC  + Y  T  + +  WR +   P +DEC L  L GI L C +EE+L+  S + R+Y
Sbjct: 1766 DVAFSDA-WWLKAQPNGL-TYLAMPYLPFFSACAGYDSHMSIAKLLESHPDCDFVEYNATHEVDELIWRKMTV-PLADECSLFNLNGIDLQCMFEENLAGGSDKPRWY 1870
[Close]
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A397BHK9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BHK9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.830e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQ--WRSIGQSPFSDEC-LIRLTGIYLNCTYEEDLSEASVQTRFY 315
            D  F DA WW     +G  T+LAMPY PF S+CAGY +HMS AKL+ESHPDC  + Y  T  + +  WR +   P +DEC L  L GI L C +EE+L+  S + R+Y
Sbjct: 2998 DVAFSDA-WWLKAQPNGL-TYLAMPYLPFFSACAGYDSHMSIAKLLESHPDCDFVEYNATHEVDELIWRKMTV-PLADECSLFNLNGIDLQCMFEENLAGGSDKPRWY 3102
[Close]
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: A0A3R7AEF6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AEF6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.850e-22
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQ--WRSIGQSPFSDEC-LIRLTGIYLNCTYEEDLSEASVQTRFY 315
            D  F DA WW     +G  T+LAMPY PF S+CAGY +HMS AKL+ESHPDC  + Y  T  + +  WR +   P +DEC L  L GI L C +EE+L+  S + R+Y
Sbjct: 11253 DVAFSDA-WWLKAQPNGL-TYLAMPYLPFFSACAGYDSHMSIAKLLESHPDCDFVEYNATHEVDELIWRKMTV-PLADECSLFNLNGIDLQCMFEENLAGGSDKPRWY 11357
[Close]
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Match: W4FP17_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FP17_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.440e-22
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:    1 DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHPDCTLIPYEQTKAISQ--WRSIGQSPFSDECLI-RLTGIYLNCTYEEDLSEASVQTRFY 315
            D  F DA WW     +G  T+LAMPY PF S+CAGY +HMS AKL+ESHPDC  + Y  T  + +  WR +   P +DEC +  L GI L C +EE+L+  S + R+Y
Sbjct: 11513 DVAFSDA-WWLKAQPNGL-TYLAMPYLPFFSACAGYDSHMSIAKLLESHPDCDFVEYNATHEVDELIWRKMTV-PLADECSVFNLNGIDLQCVFEENLAGGSDKPRWY 11617
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7365.15053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK0_ECTSI1.190e-5068.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8V0_9PHAE2.980e-5068.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCN3_9STRA1.320e-3456.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3L6VUR9_9STRA1.270e-2248.15Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R6ZFC7_9STRA1.310e-2248.15Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A6A4ZZ92_9STRA1.330e-2248.15Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397C3T7_9STRA1.830e-2248.15Uncharacterized protein (Fragment) n=5 Tax=Aphanom... [more]
A0A397BHK9_9STRA1.830e-2248.15Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R7AEF6_9STRA1.850e-2248.15Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W4FP17_9STRA3.440e-2247.22Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7365contigH-elongata_contig7365:887..1487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue6.3e-43
Seed eggNOG ortholog2880.D7FLK0
EggNOG free text desc.semaphorin-plexin signaling pathway
EggNOG OGsKOG3610@1,KOG3610@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7365.15053.1prot_H-elongata_contig7365.15053.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7365 887..1487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.9041297-CDS-H-elongata_contig7365:886..9531622931139.9041297-CDS-H-elongata_contig7365:886..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7365 887..953 -
1691679714.9854655-CDS-H-elongata_contig7365:886..9531691679714.9854655-CDS-H-elongata_contig7365:886..953Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7365 887..953 -
1622931139.9252777-CDS-H-elongata_contig7365:1007..10931622931139.9252777-CDS-H-elongata_contig7365:1007..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7365 1008..1093 -
1691679714.9965513-CDS-H-elongata_contig7365:1007..10931691679714.9965513-CDS-H-elongata_contig7365:1007..1093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7365 1008..1093 -
1622931139.9489818-CDS-H-elongata_contig7365:1325..14871622931139.9489818-CDS-H-elongata_contig7365:1325..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7365 1326..1487 -
1691679715.0082936-CDS-H-elongata_contig7365:1325..14871691679715.0082936-CDS-H-elongata_contig7365:1325..1487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7365 1326..1487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7365.15053.1

>prot_H-elongata_contig7365.15053.1 ID=prot_H-elongata_contig7365.15053.1|Name=mRNA_H-elongata_contig7365.15053.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
DAVFEDANWWAADDESGANTFLAMPYFPFLSSCAGYGNHMSFAKLVESHP
DCTLIPYEQTKAISQWRSIGQSPFSDECLIRLTGIYLNCTYEEDLSEASV
QTRFY
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mRNA from alignment at H-elongata_contig7365:887..1487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7365.15053.1 ID=mRNA_H-elongata_contig7365.15053.1|Name=mRNA_H-elongata_contig7365.15053.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=601bp|location=Sequence derived from alignment at H-elongata_contig7365:887..1487- (Himanthalia elongata Himel1 dioecious)
GACGCCGTCTTCGAAGACGCCAACTGGTGGGCAGCGGATGATGAATCTGG
GGCCAACACGTTTCTCGCAATGCCCTATTTTCCGTTTTTGAGCTCGTGTG
CGGGATATGGAAATCACATGAGCTTTGCAAAGCTAGTGGAATCGCATCCA
GACTGTACTCTGGTGAGGCGCCATTGTATTCCAACCGAGACCAATTTGCC
GATGTCATACGTTCTAGTAGATACATAGTGTTCTTGGATCACCACTAACG
CTCATCACGAAGCATACTATCGCAATTAAATTGTTGAGAAATAATGCTCC
AGTTGAGCCCCCTCTCGAGGCGTGGTCGAAATACTTCCGCTAAAGCAGCA
GGGATAGGCACTGATGAAATATTCACTTCACCACCTGTGCGCAGATTCCC
TACGAGCAAACCAAGGCAATAAGTCAGTGGCGAAGTATCGGCCAATCTCC
GTTTTCGGATGAGTGTCTCATTCGGCTGACGTTCGAAGAGCGGCATGATG
ACAGCGGGAATCTTATTGTGGAGGAAGAAACGAGGGGCATCTACCTCAAC
TGCACGTACGAGGAGGACCTCTCCGAGGCCTCCGTTCAGACCAGGTTTTA
T
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Coding sequence (CDS) from alignment at H-elongata_contig7365:887..1487-

>mRNA_H-elongata_contig7365.15053.1 ID=mRNA_H-elongata_contig7365.15053.1|Name=mRNA_H-elongata_contig7365.15053.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig7365:887..1487- (Himanthalia elongata Himel1 dioecious)
GACGCCGTCTTCGAAGACGCCAACTGGTGGGCAGCGGATGATGAATCTGG
GGCCAACACGTTTCTCGCAATGCCCTATTTTCCGTTTTTGAGCTCGTGTG
CGGGATATGGAAATCACATGAGCTTTGCAAAGCTAGTGGAATCGCATCCA
GACTGTACTCTGGACGCCGTCTTCGAAGACGCCAACTGGTGGGCAGCGGA
TGATGAATCTGGGGCCAACACGTTTCTCGCAATGCCCTATTTTCCGTTTT
TGAGCTCGTGTGCGGGATATGGAAATCACATGAGCTTTGCAAAGCTAGTG
GAATCGCATCCAGACTGTACTCTGATTCCCTACGAGCAAACCAAGGCAAT
AAGTCAGTGGCGAAGTATCGGCCAATCTCCGTTTTCGGATGAGTGTCTCA
TTCGGCTGACATTCCCTACGAGCAAACCAAGGCAATAAGTCAGTGGCGAA
GTATCGGCCAATCTCCGTTTTCGGATGAGTGTCTCATTCGGCTGACGGGC
ATCTACCTCAACTGCACGTACGAGGAGGACCTCTCCGAGGCCTCCGTTCA
GACCAGGTTTTATGGGCATCTACCTCAACTGCACGTACGAGGAGGACCTC
TCCGAGGCCTCCGTTCAGACCAGGTTTTAT
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