mRNA_H-elongata_contig73509.15041.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73509.15041.1
Unique NamemRNA_H-elongata_contig73509.15041.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Match: D7FI61_ECTSI (KIF-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI61_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.470e-57
Identity = 133/297 (44.78%), Postives = 157/297 (52.86%), Query Frame = 1 
Query:    1 LVVQRQLDAAQRGLGESVSFNPGEWSRNACFLADYYARLNLYPVAGRCLVAAQADEKGEVATSPCSDISHIFPPKSPSGPMPTGGARDGGAPIEDGSDARAFDGDNSKVPANAREFVGGGEKDTEERR-----------------------------EQRADVHRHIAKLYIDVLQTKYQERGLRESGGNLDEARSAQLAEREQRASDVVKGLDFESLGFGELAVCDPLAVEGNFESVRNVFKKAKSHTEKALQHYVLDGFVTANVALHQGLSRAYLYLSTFEEDIKRKQAMFSRRC 804
            L +QRQLDA+QRG G  VSF+PGEWSRNACFLADYY+ L  +  AGRCL+AAQA                +  P+  +  +PTGG  +   P                                                                 EQRADV RH+AKLYI VLQ K+ E G    GG   E    +  E       +V G  F SLG GEL +CDP  V G+FESVR+VFK+AKSHTE+AL+HYVLDGFVTA+VALHQGLSRAYLYLS FE D KR+QAM +RR 
Sbjct:  336 LTLQRQLDASQRGDGVKVSFDPGEWSRNACFLADYYSGLGRFTGAGRCLLAAQA----------------VLQPEGSAAAVPTGGKDNASLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQRADVDRHMAKLYITVLQAKHLELG--RGGGAGGEFCKVRTREEXXXXEGLVAG--FASLGIGELPMCDPAGVPGDFESVRDVFKRAKSHTERALRHYVLDGFVTAHVALHQGLSRAYLYLSGFERDAKRRQAMCTRRA 612
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BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Match: A0A6H5KKH7_9PHAE (KIF-binding protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKH7_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.280e-41
Identity = 89/142 (62.68%), Postives = 106/142 (74.65%), Query Frame = 1 
Query:  385 EQRADVHRHIAKLYIDVLQTKYQE--RGLRESGGNLDEARSAQLAEREQRASDVVKGLDFESLGFGELAVCDPLAVEGNFESVRNVFKKAKSHTEKALQHYVLDGFVTANVALHQGLSRAYLYLSTFEEDIKRKQAMFSRRC 804
            EQRADV RH+AKLYI VLQ K+ E  RG+  +GG   + R+    E E     +V G  F SLG GEL +CDP  V G+FESVR+VFKKAKSHTE+AL+HYVLDGFVTA+VALHQG+SRAYLYLS FE D KR++AM +RR 
Sbjct:   87 EQRADVDRHMAKLYITVLQAKHLELGRGVG-AGGAFCKVRTR---EDEXXEEGLVAG--FASLGIGELPMCDPADVPGDFESVRDVFKKAKSHTERALRHYVLDGFVTAHVALHQGMSRAYLYLSGFERDAKRRRAMSTRRA 222
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BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Match: A0A835YY34_9STRA (KIF-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY34_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.420e-11
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:  586 VCDPLAVEGNFESVRNVFKKA-KSHTEKALQHYVLDGFVTANVALHQGLSRAYLYLSTFEEDIKRKQAMFSRR 801
            + DPLAV   ++ +  +F+ A   H  +A ++YVLDGFVT +V + Q +SRAY  LS FEE++KR+QAMFSRR
Sbjct:   77 LADPLAVAATYDGMLQLFQLAVNGHLVRAHKYYVLDGFVTEHVHIAQDMSRAYDCLSMFEENVKRRQAMFSRR 149
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BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Match: A0A7S2SFT0_9STRA (KIF-binding protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFT0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-9
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 1 
Query:  328 PANAREFVGGGEKDTEERREQRADVHRHIAKLYIDVLQTKYQERGLRESGGNLDEARSAQLAEREQRASDVVKGLDFESLGFGELAVCDPLAVEG--NFESVRNVFKKAKSHTEKALQHYVLDGFVTANVALHQGLSRAYLYLSTFEEDIKRKQAMFSRRCD 807
            P +AR    G EK     +E RAD+ R     ++++L    Q+ G R  G  +    +   A            +DF S   G+L     +  +   +F+  R VFK A S  +K+++ +VLDG+VT + AL + +S+ Y +LS FE D KRKQAM+ RR D
Sbjct:  360 PLSARVVEDGSEK----AQEARADMERRWGVFHLNIL----QDAGRRHIGVPIGPLPAQTQA------------VDF-SAHLGDLPQSSAVLPDQITSFDQARAVFKLAHSRHQKSMEFFVLDGYVTDHCALLRDISQMYRWLSVFETDDKRKQAMYQRRAD 500
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BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Match: UPI001CFCC53E (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFCC53E)

HSP 1 Score: 60.1 bits (144), Expect = 1.320e-6
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  613 NFESVRNVFKKAKSHTEKALQHYVLDGFVTANVALHQGLSRAYLYLSTFEEDIKRKQAMFSRRCD 807
            +F     VFK  K   EKAL++YV+DGFV+ +++L Q LS  Y  +  FEE++ RK AM  RR D
Sbjct:  380 SFSEALEVFKDGKKAFEKALEYYVIDGFVSDHISLLQDLSSLYRCVIFFEENLDRKVAMHERRLD 444
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BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Match: A0A0V0QHK5_PSEPJ (KIF-binding protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QHK5_PSEPJ)

HSP 1 Score: 59.3 bits (142), Expect = 2.340e-6
Identity = 24/70 (34.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  598 LAVEGNFESVRNVFKKAKSHTEKALQHYVLDGFVTANVALHQGLSRAYLYLSTFEEDIKRKQAMFSRRCD 807
            + V+ +F+ V+++F++A +  +KAL ++VLDGFVT ++ + +     Y  L+  E D K+KQ ++ RR +
Sbjct:  349 IEVKKDFDEVKSIFRQANTQFKKALNYFVLDGFVTEHIQILEQQGEMYKQLAILESDFKKKQGLYERRLE 418
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BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Match: A0A7S1WGL8_ALECA (KIF-binding protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WGL8_ALECA)

HSP 1 Score: 56.6 bits (135), Expect = 5.310e-6
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  595 PLAVEGNFESVRNVFKKAKSHTEKALQHYVLDGFVTANVALHQGLSRAYLYLSTFEEDIKRKQAMFSRR 801
            P +V   FE+ R VF+ A  +  KALQ++++DG+VT +V + Q LS+ Y  +  +E+D KR  AM  RR
Sbjct:   51 PSSVGPTFETAREVFRLANHYHGKALQYFLMDGWVTEHVRILQELSQMYKTMIFWEKDKKRAAAMIKRR 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73509.15041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FI61_ECTSI1.470e-5744.78KIF-binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KKH7_9PHAE2.280e-4162.68KIF-binding protein n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A835YY34_9STRA4.420e-1150.68KIF-binding protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2SFT0_9STRA1.570e-933.33KIF-binding protein n=1 Tax=Rhizochromulina marina... [more]
UPI001CFCC53E1.320e-646.15uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A0V0QHK5_PSEPJ2.340e-634.29KIF-binding protein n=1 Tax=Pseudocohnilembus pers... [more]
A0A7S1WGL8_ALECA5.310e-642.03KIF-binding protein (Fragment) n=1 Tax=Alexandrium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73509contigH-elongata_contig73509:173..1927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.2
Seed ortholog evalue9.5e-51
Seed eggNOG ortholog2880.D7FI61
Preferred nameKIAA1279
GOsGO:0000226,GO:0000902,GO:0000904,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006810,GO:0006839,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007399,GO:0007409,GO:0007417,GO:0008092,GO:0008150,GO:0009653,GO:0009987,GO:0016043,GO:0019894,GO:0021545,GO:0021675,GO:0021952,GO:0021953,GO:0021954,GO:0021955,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048468,GO:0048483,GO:0048484,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048880,GO:0048881,GO:0048892,GO:0048894,GO:0048915,GO:0048918,GO:0048925,GO:0048929,GO:0051179,GO:0051234,GO:0061564,GO:0071840,GO:0106027,GO:0120036,GO:0120039,GO:1990535
EggNOG free text desc.mitochondrial transport
EggNOG OGs2CG8G@1,2QPZT@2759
Ec32 ortholog descriptionKIF-1 binding protein
Ec32 orthologEc-10_003680.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size816
Cds size816
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73509.15041.1prot_H-elongata_contig73509.15041.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73509 173..1927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.8148465-CDS-H-elongata_contig73509:172..3351622931138.8148465-CDS-H-elongata_contig73509:172..335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73509 173..335 +
1691679714.5408654-CDS-H-elongata_contig73509:172..3351691679714.5408654-CDS-H-elongata_contig73509:172..335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73509 173..335 +
1622931138.8291347-CDS-H-elongata_contig73509:780..12681622931138.8291347-CDS-H-elongata_contig73509:780..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73509 781..1268 +
1691679714.5522602-CDS-H-elongata_contig73509:780..12681691679714.5522602-CDS-H-elongata_contig73509:780..1268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73509 781..1268 +
1622931138.8519034-CDS-H-elongata_contig73509:1762..19271622931138.8519034-CDS-H-elongata_contig73509:1762..1927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73509 1763..1927 +
1691679714.570287-CDS-H-elongata_contig73509:1762..19271691679714.570287-CDS-H-elongata_contig73509:1762..1927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73509 1763..1927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73509.15041.1

>prot_H-elongata_contig73509.15041.1 ID=prot_H-elongata_contig73509.15041.1|Name=mRNA_H-elongata_contig73509.15041.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=272bp
LVVQRQLDAAQRGLGESVSFNPGEWSRNACFLADYYARLNLYPVAGRCLV
AAQADEKGEVATSPCSDISHIFPPKSPSGPMPTGGARDGGAPIEDGSDAR
AFDGDNSKVPANAREFVGGGEKDTEERREQRADVHRHIAKLYIDVLQTKY
QERGLRESGGNLDEARSAQLAEREQRASDVVKGLDFESLGFGELAVCDPL
AVEGNFESVRNVFKKAKSHTEKALQHYVLDGFVTANVALHQGLSRAYLYL
STFEEDIKRKQAMFSRRCDPG*
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mRNA from alignment at H-elongata_contig73509:173..1927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73509.15041.1 ID=mRNA_H-elongata_contig73509.15041.1|Name=mRNA_H-elongata_contig73509.15041.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1755bp|location=Sequence derived from alignment at H-elongata_contig73509:173..1927+ (Himanthalia elongata Himel1 dioecious)
CTTGTCGTCCAGAGGCAGCTGGACGCCGCTCAGCGGGGGCTGGGCGAGAG
TGTATCCTTCAACCCCGGAGAGTGGAGCCGGAACGCCTGCTTCCTGGCCG
ACTACTACGCCAGGCTGAACCTGTACCCGGTTGCGGGGAGGTGCCTCGTT
GCGGCGCAGGCGGGTGTTGGCTGCACGTTGATGGACGTAGCTGTCTGGCT
TCTGCGCCAATACGTTTGGGTGTCGGGTACGGGTGTGTGTGTTCGATGCG
ATGAAACGTGTCTTGCTTGGGTTCATAATGGTTGAACCATTTGCGCGGCG
GATTTAGAGGAAAGGACTCGAGGGATGCGAGATGCTGCTCTGGGAGTACC
GTGGCGCGAAACCATCGTTTGCACCGCGCGCCGTTGTTGCCTGATTCAGG
CGGTTGATGGATCGATCGGTCGTGACGCTCTTGTGGCAGGCGGTCCTCGC
TGGACAGACCGGGGGATCGAGAAATCGCGAACGGGGGGTTCGATCATGCG
ACCGCGCTGGTGGAAGCATGATGGCTCGGTCGGCCGCCGCAATGCCGAAG
GCCGGGGTCGAGATCGCGGGAGTGGAGGCACATGAGAGTACCGATTGTCT
CCTCGAAGACGAGAAAGGCGAGGTAGCCACGTCACCGTGCTCAGATATTT
CCCATATATTTCCCCCGAAGTCACCCTCGGGACCGATGCCGACTGGTGGT
GCCCGTGATGGCGGCGCTCCCATCGAGGACGGCTCGGACGCTCGCGCCTT
TGACGGCGACAATAGCAAAGTTCCTGCGAATGCGCGGGAGTTCGTGGGGG
GCGGGGAGAAGGATACGGAAGAGCGGAGGGAGCAGCGGGCGGACGTCCAT
CGGCACATCGCAAAGCTCTACATCGACGTCCTGCAGACGAAGTACCAGGA
GCGCGGCTTGCGAGAGTCCGGCGGGAACCTCGACGAAGCGAGGTCTGCTC
AGCTCGCGGAGCGGGAGCAGCGCGCGAGCGATGTCGTGAAAGGGCTAGAC
TTTGAGAGTCTGGGATTTGGGGAGCTGGCCGTGTGCGACCCGTTGGCCGT
GGAGGGAAATTTTGAGTCCGTTCGGAACGTTTTCAAAAAGGCGAAGGTGA
GTTTGTCTTGTATAGATGTATACCACAAATATACTATGTAAAACGTTGCG
CGTCGAGCTTTGGCCGCATATTTGATTTCCGTAGGGGACCGATAACATGC
ATGTTAGTGACTAACTCGAAGTATTTAACTGGAGATCAGACGCGGCGAGA
CCGCTCCAACCGTGAGAACATCGGGAACCTCGGCGGCGCCATTGATAGCG
AGTAGAGTAACCTCGTGGCCCGAACGCGGCATCTATATCCGAGTTATCCG
CGCTCTCGGTGTGCGTGTGTTTTTGTGTTTGTGAAGTAGATTGCTTCACC
GAAGAGTACCAAGAGAGGCCCGGCCTGCGACATCTCGTCTTCATGAAACG
CCTCGCTCGAGTCTCCTTCCGCCTCACCACCCCGCTGCGAAGGGGAGGGT
AAGGTGGGGTAGGGTCGTATTTTTGGCATCCCACACCTCTCCTACGGACC
GCACCATCCCCGGCTCGCCACGATAACGCCAACTTGACAGAGCCACACGG
AGAAGGCGTTGCAGCACTATGTCCTGGACGGATTCGTCACTGCCAACGTG
GCGCTGCACCAAGGCCTGAGCAGGGCCTACCTGTACCTGTCTACCTTCGA
GGAGGACATCAAGAGGAAGCAAGCCATGTTCTCGAGAAGGTGTGATCCAG
GGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig73509:173..1927+

>mRNA_H-elongata_contig73509.15041.1 ID=mRNA_H-elongata_contig73509.15041.1|Name=mRNA_H-elongata_contig73509.15041.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1632bp|location=Sequence derived from alignment at H-elongata_contig73509:173..1927+ (Himanthalia elongata Himel1 dioecious)
CTTGTCGTCCAGAGGCAGCTGGACGCCGCTCAGCGGGGGCTGGGCGAGAG
TGTATCCTTCAACCCCGGAGAGTGGAGCCGGAACGCCTGCTTCCTGGCCG
ACTACTACGCCAGGCTGAACCTGTACCCGGTTGCGGGGAGGTGCCTCGTT
GCGGCGCAGGCGGCTTGTCGTCCAGAGGCAGCTGGACGCCGCTCAGCGGG
GGCTGGGCGAGAGTGTATCCTTCAACCCCGGAGAGTGGAGCCGGAACGCC
TGCTTCCTGGCCGACTACTACGCCAGGCTGAACCTGTACCCGGTTGCGGG
GAGGTGCCTCGTTGCGGCGCAGGCGGACGAGAAAGGCGAGGTAGCCACGT
CACCGTGCTCAGATATTTCCCATATATTTCCCCCGAAGTCACCCTCGGGA
CCGATGCCGACTGGTGGTGCCCGTGATGGCGGCGCTCCCATCGAGGACGG
CTCGGACGCTCGCGCCTTTGACGGCGACAATAGCAAAGTTCCTGCGAATG
CGCGGGAGTTCGTGGGGGGCGGGGAGAAGGATACGGAAGAGCGGAGGGAG
CAGCGGGCGGACGTCCATCGGCACATCGCAAAGCTCTACATCGACGTCCT
GCAGACGAAGTACCAGGAGCGCGGCTTGCGAGAGTCCGGCGGGAACCTCG
ACGAAGCGAGGTCTGCTCAGCTCGCGGAGCGGGAGCAGCGCGCGAGCGAT
GTCGTGAAAGGGCTAGACTTTGAGAGTCTGGGATTTGGGGAGCTGGCCGT
GTGCGACCCGTTGGCCGTGGAGGGAAATTTTGAGTCCGTTCGGAACGTTT
TCAAAAAGGCGAAGACGAGAAAGGCGAGGTAGCCACGTCACCGTGCTCAG
ATATTTCCCATATATTTCCCCCGAAGTCACCCTCGGGACCGATGCCGACT
GGTGGTGCCCGTGATGGCGGCGCTCCCATCGAGGACGGCTCGGACGCTCG
CGCCTTTGACGGCGACAATAGCAAAGTTCCTGCGAATGCGCGGGAGTTCG
TGGGGGGCGGGGAGAAGGATACGGAAGAGCGGAGGGAGCAGCGGGCGGAC
GTCCATCGGCACATCGCAAAGCTCTACATCGACGTCCTGCAGACGAAGTA
CCAGGAGCGCGGCTTGCGAGAGTCCGGCGGGAACCTCGACGAAGCGAGGT
CTGCTCAGCTCGCGGAGCGGGAGCAGCGCGCGAGCGATGTCGTGAAAGGG
CTAGACTTTGAGAGTCTGGGATTTGGGGAGCTGGCCGTGTGCGACCCGTT
GGCCGTGGAGGGAAATTTTGAGTCCGTTCGGAACGTTTTCAAAAAGGCGA
AGAGCCACACGGAGAAGGCGTTGCAGCACTATGTCCTGGACGGATTCGTC
ACTGCCAACGTGGCGCTGCACCAAGGCCTGAGCAGGGCCTACCTGTACCT
GTCTACCTTCGAGGAGGACATCAAGAGGAAGCAAGCCATGTTCTCGAGAA
GGTGTGATCCAGGGTAGAGCCACACGGAGAAGGCGTTGCAGCACTATGTC
CTGGACGGATTCGTCACTGCCAACGTGGCGCTGCACCAAGGCCTGAGCAG
GGCCTACCTGTACCTGTCTACCTTCGAGGAGGACATCAAGAGGAAGCAAG
CCATGTTCTCGAGAAGGTGTGATCCAGGGTAG
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