mRNA_H-elongata_contig73502.15040.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73502.15040.1
Unique NamemRNA_H-elongata_contig73502.15040.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73502.15040.1 vs. uniprot
Match: D7FIP9_ECTSI (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP9_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.200e-43
Identity = 104/205 (50.73%), Postives = 129/205 (62.93%), Query Frame = 1 
Query:   10 YIQPGKSAKQHQLRFVRPESRWKDVSCVKGFLTKKVLDQKRLENAIRNTATSQDNVGSVSPHSREAGGSERGAAVRVGAKRKDIKCAEEEEGEEAERTELEIATEAAVVRARGVGREARKELRLSISREQMGRSQLEYMAKAMMQVMCLNAKLLKGIKECRLRG-PPRNRRCQINSQALVNLRQERARLRRRVWQLEDEIEARGM 621
            + +PG+S K+ Q R+  PE RWKDVSCVK  LTKK  D +RLE AIRNT+      GS         G   G+   VG         EE +  E ERTELE+A EA VVR + VGR+ RKELR  +SR Q+G  Q+E  AK MM++M LNAKL +G+++CR RG PP  RR  +NS AL  +R E ARLRRRV +LEDE E RG+
Sbjct:  128 FKKPGRSVKE-QGRYQHPECRWKDVSCVKSLLTKKAYDLRRLEKAIRNTSAVAGPDGSPC-----GDGGRTGSVGAVGQ-------GEEGDAAEVERTELEVAAEATVVRGKSVGRQVRKELRQMMSRSQLGCWQVEQTAKLMMKIMRLNAKLAEGLRQCRARGGPPVLRRYNMNSPALAKVRLENARLRRRVRRLEDEAERRGL 319
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73502.15040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIP9_ECTSI1.200e-4350.73HSF_DOMAIN domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73502contigH-elongata_contig73502:1573..2992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size636
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73502.15040.1prot_H-elongata_contig73502.15040.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73502 1573..2992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.6971648-CDS-H-elongata_contig73502:1572..16901622931138.6971648-CDS-H-elongata_contig73502:1572..1690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73502 1573..1690 -
1691679714.4930158-CDS-H-elongata_contig73502:1572..16901691679714.4930158-CDS-H-elongata_contig73502:1572..1690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73502 1573..1690 -
1622931138.7155266-CDS-H-elongata_contig73502:2228..23541622931138.7155266-CDS-H-elongata_contig73502:2228..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73502 2229..2354 -
1691679714.5140746-CDS-H-elongata_contig73502:2228..23541691679714.5140746-CDS-H-elongata_contig73502:2228..2354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73502 2229..2354 -
1622931138.7473671-CDS-H-elongata_contig73502:2600..29921622931138.7473671-CDS-H-elongata_contig73502:2600..2992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73502 2601..2992 -
1691679714.5264397-CDS-H-elongata_contig73502:2600..29921691679714.5264397-CDS-H-elongata_contig73502:2600..2992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73502 2601..2992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73502.15040.1

>prot_H-elongata_contig73502.15040.1 ID=prot_H-elongata_contig73502.15040.1|Name=mRNA_H-elongata_contig73502.15040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
MCIYIQPGKSAKQHQLRFVRPESRWKDVSCVKGFLTKKVLDQKRLENAIR
NTATSQDNVGSVSPHSREAGGSERGAAVRVGAKRKDIKCAEEEEGEEAER
TELEIATEAAVVRARGVGREARKELRLSISREQMGRSQLEYMAKAMMQVM
CLNAKLLKGIKECRLRGPPRNRRCQINSQALVNLRQERARLRRRVWQLED
EIEARGMTPPP*
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mRNA from alignment at H-elongata_contig73502:1573..2992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73502.15040.1 ID=mRNA_H-elongata_contig73502.15040.1|Name=mRNA_H-elongata_contig73502.15040.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1420bp|location=Sequence derived from alignment at H-elongata_contig73502:1573..2992- (Himanthalia elongata Himel1 dioecious)
ATGTGTATATATATTCAGCCAGGGAAGAGCGCAAAGCAGCACCAGCTACG
ATTTGTGCGCCCAGAGAGCCGGTGGAAAGACGTGTCCTGCGTCAAGGGAT
TCCTCACGAAGAAGGTGCTCGACCAGAAGAGGCTCGAGAACGCGATACGA
AACACCGCCACCTCTCAGGATAACGTCGGGTCTGTCAGCCCCCACTCTCG
TGAGGCGGGAGGGAGTGAAAGGGGAGCCGCGGTCCGCGTTGGCGCCAAAC
GAAAAGATATCAAGTGCGCCGAGGAAGAGGAAGGGGAGGAGGCCGAGAGG
ACGGAGTTGGAGATTGCCACCGAGGCCGCTGTTGTGAGGGCTAGGGGAGT
CGGGAGAGAGGCTAGGAAGGAGCTCCGGCTGTCGATAAGCAGGTGGGAGA
AGAGAGACCTATCACGGGTGTGGCTTGAGAGCGGCGGTGTTGTCGAAGCT
AGCCTAATCTACCTTTGAAAAAATTGACTCATCCTCGAGGACGTCTATAT
GGGTGTTGGACCCGTTGGCTGTCCAGGACGTGGGCGATGTCGCTGCGAAG
CAAGGCTGGCTGACTGTTGGAGCAAACCCGGCATGTTTTCCCGTTGTGCG
TTGCTCCTTGTTTCTTGTGTTTTCTCCCACGAGCGCAGAGAGCAGATGGG
GCGTTCGCAGCTGGAGTACATGGCAAAAGCTATGATGCAAGTCATGTGCC
TCAATGCCAAGCTGCTGAAGGGGATTAAGGAGTGCCGGCTTAGGGGGCCA
CCTCGCAATCGCCGGTGCGTGATGCGTCTCTCAGCTTTCGTTACACAGCC
TCATGACAAGGGTTTTAGTTTTTCTTTGTTCGTACGGACGGGTGGAGGGC
GTTTGGTTGAAAATATATAGAACAGAAGAGCTCTCGTTTTGAATGTTGGG
AGGGAGGCTCACGAGTGCAGTTGTCATATGCGGCGGATACAGGGAATGCT
CTAGATACACCCCCCCCCTCCCCTCTTTTATGTTTTGTATCTTAAAAAAT
CACCCTGCGTGCGAGATAGAGAAGAAATATCGTGACTCGTGCTTCAATAT
ACGGTCATATACGCGTGGCACGTGTTTCCTCGTGTGGGGCAAGGAAATTA
ATCCTTATTCGAAATACCCATCAAGCGCTGAACCAGAGACCAACTTACAG
CCACACGCCCCGACGGACCCCACGTCACCAGTACCAATGTCTTTTCCTGA
TAAATCACTCAAGAGCTTCCCTTTAGAAGACAATGTGTTGTCCTGACGGC
TTCGTTGGCGCCCCCCCCCCCCCTCGCCTCCAATTTTTCCCTGGCGCCGC
AGGTGTCAGATCAATAGCCAAGCCCTGGTGAATCTGCGCCAAGAGCGAGC
GAGGTTGAGACGGAGAGTGTGGCAACTTGAGGATGAGATCGAGGCCAGGG
GAATGACACCTCCCCCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73502:1573..2992-

>mRNA_H-elongata_contig73502.15040.1 ID=mRNA_H-elongata_contig73502.15040.1|Name=mRNA_H-elongata_contig73502.15040.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig73502:1573..2992- (Himanthalia elongata Himel1 dioecious)
ATGTGTATATATATTCAGCCAGGGAAGAGCGCAAAGCAGCACCAGCTACG
ATTTGTGCGCCCAGAGAGCCGGTGGAAAGACGTGTCCTGCGTCAAGGGAT
TCCTCACGAAGAAGGTGCTCGACCAGAAGAGGCTCGAGAACGCGATACGA
AACACCGCCACCTCTCAGGATAACGTCGGGTCTGTCAGCCCCCACTCTCG
TGAGGCGGGAGGGAGTGAAAGGGGAGCCGCGGTCCGCGTTGGCGCCAAAC
GAAAAGATATCAAGTGCGCCGAGGAAGAGGAAGGGGAGGAGGCCGAGAGG
ACGGAGTTGGAGATTGCCACCGAGGCCGCTGTTGTGAGGGCTAGGGGAGT
CGGGAGAGAGGCTAGGAAGGAGCTCCGGCTGTCGATAAGCAGATGTGTAT
ATATATTCAGCCAGGGAAGAGCGCAAAGCAGCACCAGCTACGATTTGTGC
GCCCAGAGAGCCGGTGGAAAGACGTGTCCTGCGTCAAGGGATTCCTCACG
AAGAAGGTGCTCGACCAGAAGAGGCTCGAGAACGCGATACGAAACACCGC
CACCTCTCAGGATAACGTCGGGTCTGTCAGCCCCCACTCTCGTGAGGCGG
GAGGGAGTGAAAGGGGAGCCGCGGTCCGCGTTGGCGCCAAACGAAAAGAT
ATCAAGTGCGCCGAGGAAGAGGAAGGGGAGGAGGCCGAGAGGACGGAGTT
GGAGATTGCCACCGAGGCCGCTGTTGTGAGGGCTAGGGGAGTCGGGAGAG
AGGCTAGGAAGGAGCTCCGGCTGTCGATAAGCAGAGAGCAGATGGGGCGT
TCGCAGCTGGAGTACATGGCAAAAGCTATGATGCAAGTCATGTGCCTCAA
TGCCAAGCTGCTGAAGGGGATTAAGGAGTGCCGGCTTAGGGGGCCACCTC
GCAATCGCCGAGAGCAGATGGGGCGTTCGCAGCTGGAGTACATGGCAAAA
GCTATGATGCAAGTCATGTGCCTCAATGCCAAGCTGCTGAAGGGGATTAA
GGAGTGCCGGCTTAGGGGGCCACCTCGCAATCGCCGGTGTCAGATCAATA
GCCAAGCCCTGGTGAATCTGCGCCAAGAGCGAGCGAGGTTGAGACGGAGA
GTGTGGCAACTTGAGGATGAGATCGAGGCCAGGGGAATGACACCTCCCCC
CTGAGTGTCAGATCAATAGCCAAGCCCTGGTGAATCTGCGCCAAGAGCGA
GCGAGGTTGAGACGGAGAGTGTGGCAACTTGAGGATGAGATCGAGGCCAG
GGGAATGACACCTCCCCCCTGA
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