mRNA_H-elongata_contig73458.15035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig73458.15035.1
Unique Name	mRNA_H-elongata_contig73458.15035.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: D7FZS9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZS9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.420e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1

Query:   25 MLGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            ML RGL+KF+DREPVAAVS+ +G FGFSLP IVPPIR+S+GL TKQ
Sbjct:    1 MLRRGLLKFVDREPVAAVSLGLGFFGFSLPFIVPPIRQSLGLCTKQ 46

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: D0MTW1_PHYIT (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0MTW1_PHYIT)

HSP 1 Score: 52.8 bits (125), Expect = 8.160e-8
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1

Query:   22 IMLGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            ++LG+ +  +LDREP+  +S  IG  G +LPL+V PIR SMGL T Q
Sbjct:    1 MVLGKFIRHYLDREPMVVLSCAIGAVGVTLPLVVVPIRRSMGLPTDQ 47

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: M4BD06_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BD06_HYAAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.640e-7
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1

Query:   22 IMLGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            +++G+ L  +LDREP+  VS  IG    SLPL+V P+R SMGL T Q
Sbjct:    1 MVVGKFLRHYLDREPMVVVSCAIGAVALSLPLVVVPLRRSMGLPTDQ 47

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: A0A484ECY2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECY2_BRELC)

HSP 1 Score: 50.1 bits (118), Expect = 9.460e-7
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1

Query:   28 LGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            LG+ +  +LDREP+  +S  IG  G +LPL+V PIR S+G  T Q
Sbjct:    3 LGKFIRYYLDREPMVVISCAIGAMGVTLPLVVVPIRRSLGFPTDQ 47

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: A0A8K1FDU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDU6_PYTOL)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1

Query:   31 GRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            GR +  ++DREPV  +S  IG     LPL+V PIR SMGL T+Q
Sbjct:    9 GRFVRYYIDREPVVVLSCTIGAVAVGLPLVVVPIRRSMGLPTEQ 52

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: A0A3R7KMV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KMV3_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.340e-6
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1

Query:   31 GRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            G+ +  +LDREP+  +S  IG    S+PL+V PIR SMGL T Q
Sbjct:    5 GKFIRYYLDREPMVVLSCAIGTVALSMPLVVVPIRRSMGLPTDQ 48

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: A0A6A3Y528_9STRA (E2F_TDP domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y528_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.460e-6
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1

Query:   28 LGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            LG+ +  +LDREP+  +S  IG    SLPL+V PIR SMGL T Q
Sbjct:  377 LGKFIRHYLDREPMVVISCAIGAVAVSLPLVVVPIRRSMGLPTDQ 421

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: A0A067D1D1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D1D1_SAPPC)

HSP 1 Score: 48.9 bits (115), Expect = 3.860e-6
Identity = 23/54 (42.59%), Postives = 30/54 (55.56%), Query Frame = 1

Query:    1 VNAGDVEIMLGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            V  G +    GR    ++DREPV   S  +G  G S+PLIV P+R S+G  T Q
Sbjct:   21 VRRGSMISAAGRFFRYYMDREPVVVASFALGTLGLSMPLIVVPLRRSLGYPTDQ 74

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: A0A3M6VHD8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHD8_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.210e-6
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 1

Query:   28 LGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            + + +  +LDREP+  +S  IG    S+PL+V PIR+SMGL T Q
Sbjct:    3 IAKFIRYYLDREPMVVLSCAIGAVAISMPLVVVPIRQSMGLPTDQ 47

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BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Match: A0A662X539_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X539_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.710e-6
Identity = 22/45 (48.89%), Postives = 28/45 (62.22%), Query Frame = 1

Query:   28 LGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ 162
            +G+ L  +LDREP    S  IG    +LPL+V P+R SMGL T Q
Sbjct:    3 VGKFLRYYLDREPTVVASCAIGAVALALPLVVVPLRRSMGLPTDQ 47

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot

BLAST of mRNA_H-elongata_contig73458.15035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
D7FZS9_ECTSI	1.420e-16	76.09	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D0MTW1_PHYIT	8.160e-8	51.06	Uncharacterized protein n=12 Tax=Phytophthora TaxI...	[more]
M4BD06_HYAAE	1.640e-7	51.06	Uncharacterized protein n=1 Tax=Hyaloperonospora a...	[more]
A0A484ECY2_BRELC	9.460e-7	48.89	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]
A0A8K1FDU6_PYTOL	1.900e-6	52.27	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A3R7KMV3_9STRA	3.340e-6	50.00	Uncharacterized protein n=3 Tax=Phytophthora kerno...	[more]
A0A6A3Y528_9STRA	3.460e-6	53.33	E2F_TDP domain-containing protein n=9 Tax=Phytopht...	[more]
A0A067D1D1_SAPPC	3.860e-6	42.59	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A3M6VHD8_9STRA	7.210e-6	46.67	Uncharacterized protein n=1 Tax=Peronospora effusa...	[more]
A0A662X539_9STRA	7.710e-6	48.89	Uncharacterized protein n=1 Tax=Nothophytophthora ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig73458	contig	H-elongata_contig73458:1488..1649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal anchor
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-21_003030.1
Exons	1
Model size	162
Cds size	138
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931137.9367328-UTR-H-elongata_contig73458:1487..1511	1622931137.9367328-UTR-H-elongata_contig73458:1487..1511	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig73458 1488..1511 +
1691679714.0859158-UTR-H-elongata_contig73458:1487..1511	1691679714.0859158-UTR-H-elongata_contig73458:1487..1511	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig73458 1488..1511 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931137.960328-CDS-H-elongata_contig73458:1511..1649	1622931137.960328-CDS-H-elongata_contig73458:1511..1649	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig73458 1512..1649 +
1691679714.0950136-CDS-H-elongata_contig73458:1511..1649	1691679714.0950136-CDS-H-elongata_contig73458:1511..1649	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig73458 1512..1649 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig73458.15035.1	prot_H-elongata_contig73458.15035.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig73458 1512..1649 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig73458:1488..1649+
coding sequence from alignment at H-elongata_contig73458:1488..1649+

protein sequence of mRNA_H-elongata_contig73458.15035.1

>prot_H-elongata_contig73458.15035.1 ID=prot_H-elongata_contig73458.15035.1|Name=mRNA_H-elongata_contig73458.15035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MLGRGLMKFLDREPVAAVSIVIGVFGFSLPLIVPPIRESMGLSTKQ

mRNA from alignment at H-elongata_contig73458:1488..1649+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig73458.15035.1 ID=mRNA_H-elongata_contig73458.15035.1|Name=mRNA_H-elongata_contig73458.15035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig73458:1488..1649+ (Himanthalia elongata Himel1 dioecious)
GTCAACGCGGGAGACGTGGAGATCATGCTGGGCAGGGGCCTGATGAAGTT
CTTGGATAGGGAACCGGTTGCTGCGGTTTCCATCGTCATCGGTGTCTTCG
GATTTAGTCTTCCGCTCATCGTCCCCCCCATCCGAGAGAGCATGGGGCTC
AGCACCAAGCAG

Coding sequence (CDS) from alignment at H-elongata_contig73458:1488..1649+

>mRNA_H-elongata_contig73458.15035.1 ID=mRNA_H-elongata_contig73458.15035.1|Name=mRNA_H-elongata_contig73458.15035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig73458:1488..1649+ (Himanthalia elongata Himel1 dioecious)
ATGCTGGGCAGGGGCCTGATGAAGTTCTTGGATAGGGAACCGGTTGCTGC
GGTTTCCATCGTCATCGGTGTCTTCGGATTTAGTCTTCCGCTCATCGTCC
CCCCCATCCGAGAGAGCATGGGGCTCAGCACCAAGCAGATGCTGGGCAGG
GGCCTGATGAAGTTCTTGGATAGGGAACCGGTTGCTGCGGTTTCCATCGT
CATCGGTGTCTTCGGATTTAGTCTTCCGCTCATCGTCCCCCCCATCCGAG
AGAGCATGGGGCTCAGCACCAAGCAG