mRNA_H-elongata_contig73456.15034.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 187 bits (475), Expect = 2.110e-51 Identity = 93/188 (49.47%), Postives = 120/188 (63.83%), Query Frame = 1
Query: 22 IRKVNPQSAPGPSGLRHCHLQDVRDDDLEVDIARLSRTIFKSETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
IR+ NPQ +PGPSGLR LQ +L IA+L IF LP FW LHT ANLSA+G K RP+ GD+FRRI+GG C Y LA HF+P+GQ+GV PGG +L+ L +G +L++D +NAFNS+ R LP LA ++P + YA N+YAR+PPKLL+ D S +I S+ GVQQ
Sbjct: 1167 IRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTD-SGMAVIPSATGVQQ 1353
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 168 bits (425), Expect = 3.580e-47 Identity = 89/194 (45.88%), Postives = 115/194 (59.28%), Query Frame = 1
Query: 10 IGDAIRKVNPQSAPGPSGLRHCHLQDVRDDDLEVD-IARLSRTIFK-SETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
I ++K NPQSAPGP GLR +LQ D + +A S +F + LP FW LHT ANLSALG K RP+ G V RRII G+FC Y +A F+ Q G PGG++++ L +G TILSFDGKNA+NS+ R LP +AT P + Y N+YAR KLLF M++ + ++ S RGVQQ
Sbjct: 125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 168 bits (425), Expect = 1.580e-45 Identity = 89/194 (45.88%), Postives = 115/194 (59.28%), Query Frame = 1
Query: 10 IGDAIRKVNPQSAPGPSGLRHCHLQDVRDDDLEVD-IARLSRTIFK-SETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
I ++K NPQSAPGP GLR +LQ D + +A S +F + LP FW LHT ANLSALG K RP+ G V RRII G+FC Y +A F+ Q G PGG++++ L +G TILSFDGKNA+NS+ R LP +AT P + Y N+YAR KLLF M++ + ++ S RGVQQ
Sbjct: 125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 169 bits (427), Expect = 5.570e-45 Identity = 89/194 (45.88%), Postives = 114/194 (58.76%), Query Frame = 1
Query: 10 IGDAIRKVNPQSAPGPSGLRHCHLQ-DVRDDDLEVDIARLSRTIFK-SETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
I ++K NPQSAPGP GLR +LQ D +A S +F + LP FW LHT ANLSALG K RP+ G V RRII G+FC Y +A F+ Q G PGG++++ L +G TILSFDGKNA+NS+ R LP +AT P + Y N+YAR KLLF M++ + ++ S RGVQQ
Sbjct: 125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 168 bits (425), Expect = 7.780e-45 Identity = 89/194 (45.88%), Postives = 115/194 (59.28%), Query Frame = 1
Query: 10 IGDAIRKVNPQSAPGPSGLRHCHLQDVRDDDLEVD-IARLSRTIFK-SETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
I ++K NPQSAPGP GLR +LQ D + +A S +F + LP FW LHT ANLSALG K RP+ G V RRII G+FC Y +A F+ Q G PGG++++ L +G TILSFDGKNA+NS+ R LP +AT P + Y N+YAR KLLF M++ + ++ S RGVQQ
Sbjct: 125 IKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 318
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.370e-37 Identity = 70/152 (46.05%), Postives = 93/152 (61.18%), Query Frame = 1
Query: 130 RTIFKSETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
+ + + LP FW LHT ANLSALG K RP+ G V RRII G+FC Y +A F+ Q G PGG++++ L +G TILSFDGKNA+NS+ R LP +AT P ++ Y N+YAR KLLF M++ + ++ S RGVQQ
Sbjct: 15 KVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 166
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.580e-37 Identity = 72/164 (43.90%), Postives = 95/164 (57.93%), Query Frame = 1
Query: 97 DDLEVDIARLSRTIFK-SETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
DD +A S +F + LP LFW T A+LSALG K RP+ G V RRII G+FC Y + +A F+ Q G PGG++++ L +G TILSFDG+NA+NSI R L +AT P + Y NLYAR KLLF M++ + ++ S R VQQ
Sbjct: 3 DDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.680e-34 Identity = 68/152 (44.74%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 130 RTIFKSETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
+ + + LP W LHT ANLSALG K RP+ G V RRII G+F Y +A F+ Q G PGG++++ L +G TILSFDGKNA+NS+ R LP +AT+ P + Y N+YAR KLLF M++ + ++ S RGVQQ
Sbjct: 15 KVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQ 166
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 104 bits (259), Expect = 6.090e-25 Identity = 56/135 (41.48%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 97 DDLEVDIARLSRTIFK-SETLPPLFWALHTGANLSALGAKTRPVTCGDVFRRII------------GGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVRLGFAEGCTILSFDGKNAFNSISRHEFLPTLA 462
DD +A S +F + LP LFW LHT A+LSALG K RP+ G V RRII G+FC Y + +A F+ Q G PGG++++ +G TILSFDGKNA+NSI R L +A
Sbjct: 3 DDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Match: A0A812UIA4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UIA4_9DINO) HSP 1 Score: 64.7 bits (156), Expect = 8.890e-9 Identity = 53/197 (26.90%), Postives = 89/197 (45.18%), Query Frame = 1
Query: 10 IGDAIRKVNPQSAPGPSGLRHCHLQDVRDDDLEVDIARLSRTIFKSETLPPLFWALHTGANLSALGAK---TRPVTCGDVFRRIIGGTFCSDYSKQLAGHFKPKGQHGVTCPGGIDLMPRAVR--LGFAEGCTILSFDGKNAFNSISRHEFLPTLATVVPVVSGYAANLYARDPPKLLFAMDNSTKGIIDSSRGVQQ 585
+ DA+R SA G SG + + DD+ ++ + PP+ + L+AL R + GDVFRR++ Y+ +L +P Q + G D + +R + F T++S DG++A+++ISR L L+ VVP + +A +YAR L+ D T I + G++Q
Sbjct: 259 VADALRTSKRGSAAGLSGATVEFYKLLLDDEGALEAFTFVVNVAARAQAPPVALDALALSRLTALRKPQGGVRGIATGDVFRRLVSRALARAYAGELDEATRPF-QFALRTRAGTDSLAAMLRSAVEFDPRATVVSLDGRSAYDTISRAAILSKLSEVVPALLPFARAIYARTST-FLWWDDEGTLHEISQAEGIEQ 453 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73456.15034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73456.15034.1 >prot_H-elongata_contig73456.15034.1 ID=prot_H-elongata_contig73456.15034.1|Name=mRNA_H-elongata_contig73456.15034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=195bp PSAIGDAIRKVNPQSAPGPSGLRHCHLQDVRDDDLEVDIARLSRTIFKSEback to top mRNA from alignment at H-elongata_contig73456:902..1486- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73456.15034.1 ID=mRNA_H-elongata_contig73456.15034.1|Name=mRNA_H-elongata_contig73456.15034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=585bp|location=Sequence derived from alignment at H-elongata_contig73456:902..1486- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73456:902..1486- >mRNA_H-elongata_contig73456.15034.1 ID=mRNA_H-elongata_contig73456.15034.1|Name=mRNA_H-elongata_contig73456.15034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1170bp|location=Sequence derived from alignment at H-elongata_contig73456:902..1486- (Himanthalia elongata Himel1 dioecious)back to top |