mRNA_H-elongata_contig73422.15033.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73422.15033.1
Unique NamemRNA_H-elongata_contig73422.15033.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: D7FYK6_ECTSI (Aminodeoxychorismate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK6_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.920e-70
Identity = 126/172 (73.26%), Postives = 135/172 (78.49%), Query Frame = 1
Query:    1 LRSFHQEERSKQPSLFSVVRAVVDLFYYDADPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKEPCNS 516
            L  F QEERSKQPSLFSVVRA VDLFYY+ DPQLGLYGAFGYDLTFQFDSIPL HERD SQKDLLLY+PD MLVVDQ         DKRDAW IEY+FAY G +T+GL R GEVV Y+P       GD     RDTP GDYAKKV+KAK+EFKVGNLFEVVLSQTFK+PC S
Sbjct:  139 LSPFSQEERSKQPSLFSVVRAAVDLFYYEGDPQLGLYGAFGYDLTFQFDSIPLKHERDGSQKDLLLYLPDKMLVVDQ---------DKRDAWSIEYDFAYGGATTEGLPREGEVVAYKP---SDKPGD-----RDTPPGDYAKKVDKAKQEFKVGNLFEVVLSQTFKKPCTS 293          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: A0A7R9ZU98_9STRA (Aminodeoxychorismate synthase n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZU98_9STRA)

HSP 1 Score: 186 bits (473), Expect = 8.440e-52
Identity = 100/167 (59.88%), Postives = 123/167 (73.65%), Query Frame = 1
Query:    7 SFHQEERSKQPSLFSVVRAVVDLF-YYDADPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKE 504
            +F +EERS+QPSLFSVVR++VDLF Y D D QLGLYGAFGYDLTF F+ I L  +RD  Q+DLLLY+PD++ V+D         SDKRDAW I+YEF   G ST+GL RVG   D++P+   +     E  ERDTP GD+AK V++AKEEFK+GNLFE VLSQTF+E
Sbjct:  224 TFSEEERSRQPSLFSVVRSLVDLFGYQDGDGQLGLYGAFGYDLTFSFEPIDLKQDRDPEQRDLLLYLPDSVYVID---------SDKRDAWHIQYEFNADGKSTQGLPRVGLEEDFKPYDEATT----EFIERDTPEGDFAKSVDRAKEEFKIGNLFEAVLSQTFRE 377          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: A0A835Z6A5_9STRA (Aminodeoxychorismate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.680e-51
Identity = 100/164 (60.98%), Postives = 118/164 (71.95%), Query Frame = 1
Query:   19 EERSKQPSLFSVVRAVVDLFYYDADPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKEPC 510
            EERS+QPSLFSVVR++V LF ++ DPQLGLYGAFGYDLTFQF+ I     RD  Q+D++LY+PD +LVVDQ         DKRDAW I Y+FAY GVST GL R G     EP+ +      AE  ERDTP G+YAKKVE A+EEF++GNLFE VLSQTF  PC
Sbjct:  133 EERSRQPSLFSVVRSIVSLFSFEDDPQLGLYGAFGYDLTFQFEPIEQVLPRDADQRDIVLYLPDKLLVVDQ---------DKRDAWTISYDFAYGGVSTAGLPRGGA---REPYVAA-----AEAPERDTPQGEYAKKVEVAREEFRLGNLFETVLSQTFTAPC 279          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: A0A7S2KI33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KI33_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.510e-50
Identity = 96/167 (57.49%), Postives = 118/167 (70.66%), Query Frame = 1
Query:    7 SFHQEERSKQPSLFSVVRAVVDLFYYD-ADPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKE 504
            SF +EERS+QPSLFSVVR++VDLF YD  D QLGLYGAFGYDLTFQF+ I L   RDE Q+D+LLY+PD ++VVDQ         DKRDAW I Y+F   G ST+G+ R G +  ++ +   S  G A  + RDTP  +++  VEKAK EF VGNLFE VLSQTF+E
Sbjct:  145 SFSEEERSRQPSLFSVVRSLVDLFGYDDGDNQLGLYGAFGYDLTFQFEPIKLHQLRDEKQRDILLYLPDEIVVVDQ---------DKRDAWTISYDFFVDGKSTQGMERGGSIEPFKAFDENSPAGKAF-TPRDTPESEFSASVEKAKHEFAVGNLFEAVLSQTFRE 301          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: W7TEM3_9STRA (Aminodeoxychorismate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEM3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.150e-50
Identity = 94/169 (55.62%), Postives = 124/169 (73.37%), Query Frame = 1
Query:   10 FHQEERSKQPSLFSVVRAVVDLFYYDADPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKEPCNS 516
            F +EERS+QPS+FSV+R +VD F  D DPQLGLYG FGYDLTFQF+ I L   R ++Q+D++LY+PD +LVVDQ         DKR AWR+EY+F++ G ST+GL R G V++Y     R+A  +A   +RD+P G+YA++V  AK++FKVGNLFEVVLSQTF + C S
Sbjct:  256 FPEEERSRQPSIFSVIRTLVDFFQSDGDPQLGLYGTFGYDLTFQFEPIKLRMPRSDNQRDVVLYLPDRVLVVDQ---------DKRAAWRVEYDFSWNGRSTQGLARTGRVLEY-----RAAPAEALKRDRDSPVGEYARRVAMAKDQFKVGNLFEVVLSQTFFKECPS 410          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: K0SCK3_THAOC (Aminodeoxychorismate synthase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SCK3_THAOC)

HSP 1 Score: 179 bits (453), Expect = 5.250e-49
Identity = 94/175 (53.71%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    7 SFHQEERSKQPSLFSVVRAVVDLFYYDADP----QLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKEPCNSR 519
            SF +E+RS+QPSLFSVVRA+VDLF YD+D     QLGLYGAFGYDLTFQF+ I L+ ERD +Q+DL LY+ D ++VVD +R           AW +  +F Y G ST+GL R G  V + P+    +    +  ERDTP GD+ K V++AKEEFKVGNLFE VLSQTF++P   +
Sbjct:  223 SFSEEDRSRQPSLFSVVRALVDLFGYDSDESGDLQLGLYGAFGYDLTFQFEPIKLSQERDPNQRDLQLYLADEIVVVDSSRN---------SAWTVSLDFEYGGRSTEGLPREGGDVPFRPYGDHPSNAGEDFEERDTPAGDFTKSVDRAKEEFKVGNLFETVLSQTFRKPLTEK 388          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: B7FRL0_PHATC (Aminodeoxychorismate synthase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRL0_PHATC)

HSP 1 Score: 178 bits (452), Expect = 9.580e-49
Identity = 99/167 (59.28%), Postives = 121/167 (72.46%), Query Frame = 1
Query:    7 SFHQEERSKQPSLFSVVRAVVDLFYYDA-DPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKE 504
            +F++EERS+QPSLFSVVRA+VDLF Y A D QLGLYGAFGYDLTFQF+ I L  ERD  Q+DLLLY+PDTMLVVDQ         DKRDAWR+ Y+F     ST+G+ R G    ++ +++ +     +  ERDTP  ++A  V KAKEEFKVGNLFE VLSQTF+E
Sbjct:  225 TFNEEERSRQPSLFSVVRALVDLFSYQAGDRQLGLYGAFGYDLTFQFEPIDLAQERDSEQRDLLLYLPDTMLVVDQ---------DKRDAWRVCYDFNVDQKSTQGIPRTGTPQPFQAYATST-----DFVERDTPPSEFANSVLKAKEEFKVGNLFEAVLSQTFRE 377          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: A0A7S1YQY3_9STRA (Aminodeoxychorismate synthase n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQY3_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.290e-48
Identity = 95/172 (55.23%), Postives = 122/172 (70.93%), Query Frame = 1
Query:    7 SFHQEERSKQPSLFSVVRAVVDLFYYDA-DPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKEPCNSR 519
            +F +E+RS+QPSLFSVVRA+V+LF YD  D QLGLYGAFGYDLTFQF+ I L   RD +Q+DLLLY+PD ++VVDQ         DK+DAW I Y+F     ST+G+ RVG+   ++P+    A      S RDTP  +++K VEKAK EFKVGNLFE VLSQTF+E  +++
Sbjct:  219 TFSEEDRSRQPSLFSVVRALVNLFGYDGGDRQLGLYGAFGYDLTFQFEPITLAQVRDITQRDLLLYLPDEIVVVDQ---------DKQDAWTISYDFCVDQKSTQGMPRVGDATPFQPFDENDAEAVENFSSRDTPRSEFSKSVEKAKYEFKVGNLFEAVLSQTFREKLDAQ 381          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: A0A7S2R582_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R582_9STRA)

HSP 1 Score: 169 bits (428), Expect = 4.830e-47
Identity = 92/171 (53.80%), Postives = 119/171 (69.59%), Query Frame = 1
Query:    7 SFHQEERSKQPSLFSVVRAVVDLF-YYDADPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKEPCNS 516
            SF++E+RS+QPSLFSVVR++VDLF Y D D QLGLYGAFGYD+TFQF+ I  T ERD  Q+D+LLY+PD + VVDQ         DKRDAW I Y+F+    +T+GL R G    ++ +      G  +   RDTP  +++K VEKAK EF +GNLFEVVLSQTF+E  ++
Sbjct:  226 SFNEEDRSRQPSLFSVVRSLVDLFGYQDGDGQLGLYGAFGYDVTFQFEPIKKTQERDPEQRDILLYLPDEITVVDQ---------DKRDAWVISYDFSVNNKTTQGLPRGGSDAPFKHFQE----GKQKFQARDTPNSEFSKSVEKAKNEFAIGNLFEVVLSQTFREKLDA 383          
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Match: A0A1E7FRX3_9STRA (Aminodeoxychorismate synthase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRX3_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.330e-46
Identity = 94/167 (56.29%), Postives = 119/167 (71.26%), Query Frame = 1
Query:    7 SFHQEERSKQPSLFSVVRAVVDLF-YYDADPQLGLYGAFGYDLTFQFDSIPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAYAGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKEEFKVGNLFEVVLSQTFKE 504
            +F +EERS+QPSLFSVVR++V+LF Y D D QLGLYGAFGYDLTF F+ I +  ERD  Q+DLLLY+PD++ V+D         SDKRDAW ++YEF     ST+GL RVG    ++ +    +    E  +RDTP G++A+ V KAKEEFKVGNLFE VLSQTF+E
Sbjct:  191 TFSEEERSRQPSLFSVVRSLVNLFGYQDGDGQLGLYGAFGYDLTFSFEPIDMKQERDPEQRDLLLYLPDSVYVID---------SDKRDAWHVQYEFCVDQKSTQGLPRVGLDDKFQSFDENKS----EFIKRDTPEGEFAESVYKAKEEFKVGNLFEAVLSQTFRE 344          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73422.15033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYK6_ECTSI1.920e-7073.26Aminodeoxychorismate synthase n=1 Tax=Ectocarpus s... [more]
A0A7R9ZU98_9STRA8.440e-5259.88Aminodeoxychorismate synthase n=1 Tax=Pseudo-nitzs... [more]
A0A835Z6A5_9STRA2.680e-5160.98Aminodeoxychorismate synthase n=1 Tax=Tribonema mi... [more]
A0A7S2KI33_9STRA2.510e-5057.49Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7TEM3_9STRA3.150e-5055.62Aminodeoxychorismate synthase n=2 Tax=Monodopsidac... [more]
K0SCK3_THAOC5.250e-4953.71Aminodeoxychorismate synthase (Fragment) n=1 Tax=T... [more]
B7FRL0_PHATC9.580e-4959.28Aminodeoxychorismate synthase n=2 Tax=Phaeodactylu... [more]
A0A7S1YQY3_9STRA1.290e-4855.23Aminodeoxychorismate synthase n=3 Tax=Ditylum brig... [more]
A0A7S2R582_9STRA4.830e-4753.80Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A1E7FRX3_9STRA1.330e-4656.29Aminodeoxychorismate synthase n=1 Tax=Fragilariops... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73422contigH-elongata_contig73422:743..2917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue7.2e-60
Seed eggNOG ortholog2880.D7FYK6
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0512@1,KOG0026@2759,KOG1223@2759
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnthranilate Synthase
Ec32 orthologEc-02_004370.1
Exons4
Model size522
Cds size522
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73422.15033.1prot_H-elongata_contig73422.15033.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73422 743..2917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.7932968-CDS-H-elongata_contig73422:742..8321622931137.7932968-CDS-H-elongata_contig73422:742..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 743..832 -
1691679714.028167-CDS-H-elongata_contig73422:742..8321691679714.028167-CDS-H-elongata_contig73422:742..832Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 743..832 -
1622931137.8140593-CDS-H-elongata_contig73422:1229..14031622931137.8140593-CDS-H-elongata_contig73422:1229..1403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 1230..1403 -
1691679714.0402691-CDS-H-elongata_contig73422:1229..14031691679714.0402691-CDS-H-elongata_contig73422:1229..1403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 1230..1403 -
1622931137.828761-CDS-H-elongata_contig73422:2243..23791622931137.828761-CDS-H-elongata_contig73422:2243..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 2244..2379 -
1691679714.0504205-CDS-H-elongata_contig73422:2243..23791691679714.0504205-CDS-H-elongata_contig73422:2243..2379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 2244..2379 -
1622931137.842803-CDS-H-elongata_contig73422:2795..29171622931137.842803-CDS-H-elongata_contig73422:2795..2917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 2796..2917 -
1691679714.0622778-CDS-H-elongata_contig73422:2795..29171691679714.0622778-CDS-H-elongata_contig73422:2795..2917Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73422 2796..2917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73422.15033.1

>prot_H-elongata_contig73422.15033.1 ID=prot_H-elongata_contig73422.15033.1|Name=mRNA_H-elongata_contig73422.15033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
LRSFHQEERSKQPSLFSVVRAVVDLFYYDADPQLGLYGAFGYDLTFQFDS
IPLTHERDESQKDLLLYIPDTMLVVDQARKPARAFSDKRDAWRIEYEFAY
AGVSTKGLGRVGEVVDYEPWSSRSATGDAEGSERDTPGGDYAKKVEKAKE
EFKVGNLFEVVLSQTFKEPCNSR*
back to top

mRNA from alignment at H-elongata_contig73422:743..2917-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73422.15033.1 ID=mRNA_H-elongata_contig73422.15033.1|Name=mRNA_H-elongata_contig73422.15033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2175bp|location=Sequence derived from alignment at H-elongata_contig73422:743..2917- (Himanthalia elongata Himel1 dioecious)
TTGCGCTCGTTCCACCAGGAAGAGCGCAGCAAGCAGCCTTCCCTCTTTAG CGTCGTGAGAGCCGTCGTGGACCTCTTCTACTACGACGCCGACCCGCAGC TGGGGCTGTACGGAGCTTTCGGGTAAAAATACAAGATATTTGTAGAAAAA GAGAGACAGAAAAAACGAGGCCCGTTATGGTGTGATGTCGAGAAACTGTT TGGAAAGAGGATTGGTAAATTGTATCCCCGGGGTTTGTCTAGGTAGGCGA GGCGTGTTTCTCTCACTCTGTCGCCTGTTCCGGTTTGTGTTGAAAACAGT CCAGAACTGACTGCGTGATCGAGACTGATAAAGTTTGGTGCTCTGTCGAG GCGTGGGGCTAGTTTTTTCACCCAGAGCCATATCAAACGTAACCCCCAAA AAGTTTTAAAAACAGATCTTGACGGATAACCTACAAGTCTCTTCAATGGG TAACCTGTCTTAACACTACACTTTTATTGATGTTTGTCGTTGATGGGTTT TTTGCTGTTGACGCTGGTGCTTCCGGCGTATGTGGCAGGTACGACCTGAC GTTCCAGTTCGACTCTATCCCCTTGACCCATGAGAGGGACGAGTCGCAGA AGGACCTTCTCCTCTACATTCCGGACACGATGCTGGTCGTGGACCAGGCG AGGAAGCCTGCTCGCGCGTTTTCCGTCACATCGCGGAATGATCCAGACAC AAAACGATATGATACGATATGATACGGTTCAAGATATGATACGATACGAT ACGGTGGTAGAGGAGATCCGATGTATAGTGTATAATTCATAGTGTGGTAA TATAATACTACAGTATAGTACACTGCGGCGGGAATCCGTCTTGCATGGTA AGAGTATCCAATCCAATCCAATCCAATCCAATCTAATACGGCACGAGTTG GGAGTGGCTCTCGTTTAATACCCTTCTGTTGCTGCTGCGCTAATCGACAA TACCCTCGAGACGGCAGCACAACAAACGGAGCGCGGGGTATTGTCGGTTA GCGTTGAGTGGCAGGGGGGTGGGGGGGGGGAGGAAGGCAGCGGCAGAATA GCGGTGTTGGAAGAACACATGACCTGGCTGGGGATTTTTTTTGCTGGAGG TCGGACCGAGAGCGGTAGGCCTCTTCCCGGTGTGCTCTTTTCTTGTACAA TGCACGCATCGTAGGCATCAAGCGGGTTGGAAAATGGTTTGTGGGGTGGG GGGGGGGGTCTGGTTGGCGTTCGTTTCTTTTAAATTAATTAACTAATTTT ATTTTTATTGTTATTTTTTATTGGCATGAGTNNNNNNNNNNGTGGTTGGG GGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGTCTCGTTTGCGTTCGTTTCTTTTAAATTAATT AACTAATTTTATTGTTATTGTTATTTTTTATTAGCATGAGTTGTATTTTT GGTGGTATTTTTTTCAGTAATCGTACGAAATTTAATTTTGTTCATTTTCT CGTCCCGGAAAAAGGACAAACGGGACGCCTGGAGGATCGAATACGAGTTC GCATACGCTGGCGTCAGCACGAAGGGGCTTGGCCGCGTGGGCGAAGTGGT GGACTATGAACCGTGGTCCTCCCGTTCTGCGACGGGGGACGCGGAGGGGT CAGAGCGAGACACGCCGGGGGGGGACTACGCGAAGAAGGTTTTGCACGAT AGAAGGAGCGTTACTACACTAACCGCGTGAAATAAAAGGGGAGTTTCTGG TGTATTTTTTTCTTGTTGTTTTGATGTTTTGATGTGTGTTCTCTTATCTG TTGCCGTATATAATGTTTTATATATTGTTTTCTATATTGTTGTCTAGGAC GTGATGGTAGCAATATGATTGTGGGATGGTATGGGATCGGATCGGATATA GTAGGAGTTCCATGTCTCCCCCGTCTGTTGTAGAAGCGGGAGGAAGGGGA AGAAAAAAAGTAGGGGGGAAATATGTCGATATATCAAAGAGATATAGCGA AGAATTTCCCCGTTGCGGGCGGTGGATAACCAAATCGAAGATCTAAAAAA TCGGAAGGGCTGAAAATATTTTTTGTGTCCGACAGGTCGAGAAGGCGAAG GAAGAGTTCAAGGTGGGCAACCTGTTCGAGGTGGTCCTCAGCCAGACTTT CAAGGAGCCCTGCAACTCTAGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig73422:743..2917-

>mRNA_H-elongata_contig73422.15033.1 ID=mRNA_H-elongata_contig73422.15033.1|Name=mRNA_H-elongata_contig73422.15033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig73422:743..2917- (Himanthalia elongata Himel1 dioecious)
TTGCGCTCGTTCCACCAGGAAGAGCGCAGCAAGCAGCCTTCCCTCTTTAG
CGTCGTGAGAGCCGTCGTGGACCTCTTCTACTACGACGCCGACCCGCAGC
TGGGGCTGTACGGAGCTTTCGGTTGCGCTCGTTCCACCAGGAAGAGCGCA
GCAAGCAGCCTTCCCTCTTTAGCGTCGTGAGAGCCGTCGTGGACCTCTTC
TACTACGACGCCGACCCGCAGCTGGGGCTGTACGGAGCTTTCGGGTACGA
CCTGACGTTCCAGTTCGACTCTATCCCCTTGACCCATGAGAGGGACGAGT
CGCAGAAGGACCTTCTCCTCTACATTCCGGACACGATGCTGGTCGTGGAC
CAGGCGAGGAAGCCTGCTCGCGCGTTTTCCGTACGACCTGACGTTCCAGT
TCGACTCTATCCCCTTGACCCATGAGAGGGACGAGTCGCAGAAGGACCTT
CTCCTCTACATTCCGGACACGATGCTGGTCGTGGACCAGGCGAGGAAGCC
TGCTCGCGCGTTTTCCGACAAACGGGACGCCTGGAGGATCGAATACGAGT
TCGCATACGCTGGCGTCAGCACGAAGGGGCTTGGCCGCGTGGGCGAAGTG
GTGGACTATGAACCGTGGTCCTCCCGTTCTGCGACGGGGGACGCGGAGGG
GTCAGAGCGAGACACGCCGGGGGGGGACTACGCGAAGAAGGACAAACGGG
ACGCCTGGAGGATCGAATACGAGTTCGCATACGCTGGCGTCAGCACGAAG
GGGCTTGGCCGCGTGGGCGAAGTGGTGGACTATGAACCGTGGTCCTCCCG
TTCTGCGACGGGGGACGCGGAGGGGTCAGAGCGAGACACGCCGGGGGGGG
ACTACGCGAAGAAGGTCGAGAAGGCGAAGGAAGAGTTCAAGGTGGGCAAC
CTGTTCGAGGTGGTCCTCAGCCAGACTTTCAAGGAGCCCTGCAACTCTAG
GTAAGTCGAGAAGGCGAAGGAAGAGTTCAAGGTGGGCAACCTGTTCGAGG
TGGTCCTCAGCCAGACTTTCAAGGAGCCCTGCAACTCTAGGTAA
back to top