mRNA_H-elongata_contig73355.15028.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73355.15028.1
Unique NamemRNA_H-elongata_contig73355.15028.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A834L4M7_RHOSS (HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834L4M7_RHOSS)

HSP 1 Score: 198 bits (504), Expect = 8.250e-59
Identity = 112/248 (45.16%), Postives = 158/248 (63.71%), Query Frame = 1
Query:   25 RTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGT--RKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
            RT  RS AAA+ +PKTT HRR+K+  ++ HS  LKP L+   K  RL++  S +  S   +  RKF  + N  H DEKW+Y+ +E +RYY+   E  P     SK +IPKVMFL  V RPR + +QN +FSGKIGI+PF  K  A+RSS+NRP GT+ T     VTK+  +  +I +V+P I++++PR  A     +  I++QQDNA+PH+   D + + A + DG+DIR+ NQP   PD N+LDLG+
Sbjct:   39 RTNIRSLAAAMKVPKTTIHRRIKEGKIRPHSNALKPYLSEQAKKARLQFCLSMLEPSEDESQPRKFKSMYNYVHIDEKWFYMTKEAERYYLLPEEEEPHRTCKSKRFIPKVMFLAAVARPRFDANQNEEFSGKIGIFPFVFKEPARRSSKNRPAGTLETKAILSVTKDIIRSCLINEVLPAIQSKWPRSSA-----HETIFIQQDNAKPHIQPFDLQFVEAATKDGFDIRLSNQPPSSPDMNVLDLGY 281          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A834FTG5_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FTG5_RHOSS)

HSP 1 Score: 197 bits (500), Expect = 4.380e-57
Identity = 113/248 (45.56%), Postives = 159/248 (64.11%), Query Frame = 1
Query:   25 RTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGT--RKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
            RT  RS AAA+ +PKTT HRR+K+  ++ HS  LKP L+   K  RL++  S +  S   +  RKF  + N  H DEKW+Y+ +E + YY+   E  P     SK +IPKVMFL  V RPR + +QN +FSGKIGI+PF  K  A+RSS+NRP GT+ T     VTK+  +  +I QV+P I++++P  P+SA   +  I++QQDNA+PH+   D + + A + DG+DIR+ NQP   PD N+LDLG+
Sbjct:   75 RTNIRSLAAAMKVPKTTIHRRIKEGKIRPHSNALKPYLSEQAKKARLQFCLSMLEPSEDESQPRKFKSMYNYVHIDEKWFYMTKEAESYYLLPEEEEPHRTCKSKRFIPKVMFLAAVARPRFDANQNEEFSGKIGIFPFVFKEPARRSSKNRPAGTLETKAILSVTKDIIRSCLINQVLPAIQSKWP--PSSA---HETIFIQQDNAKPHIQPFDLQFVEAATKDGFDIRLSNQPPSSPDMNVLDLGY 317          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI000CD873B3 (uncharacterized protein LOC111883545 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD873B3)

HSP 1 Score: 196 bits (497), Expect = 1.510e-56
Identity = 115/252 (45.63%), Postives = 159/252 (63.10%), Query Frame = 1
Query:   10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTS-SGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
             PL+ R+  RS A  + + K+T HRR+K+  ++ H+  +KP LT+ +K  RL +  S +S S S     F+ + NV H DEKW+Y+ +  +RYY+  GE  P     SK +I KVMFL  V RPR + S N  FSGKIGIYPFT    A+RSS+NR  GT+ T P   VTKE  +  +I++V+PDI+A++PR  +   P    I++QQDNA+PH+  +D E L A S DG+DIR+  QP   PD N+LDLGF
Sbjct:   95 IPLRRRSNIRSLANLLNVSKSTMHRRIKEGALRPHTNAIKPTLTHENKRARLEFCLSKISRSLSSNIPTFHDMFNVIHIDEKWFYMSKPSRRYYLVPGEDEPLRTCQSKKFITKVMFLAAVARPRFDASGNEVFSGKIGIYPFTRLEPAKRSSKNRVAGTLETKPILSVTKEVTRSWLIEKVLPDIRAKWPR--SHVGP----IFIQQDNAKPHIDVNDNEFLEAASQDGFDIRLNFQPSNSPDLNVLDLGF 340          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI000CD9DCB3 (uncharacterized protein LOC111916103 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9DCB3)

HSP 1 Score: 193 bits (490), Expect = 1.690e-55
Identity = 112/253 (44.27%), Postives = 159/253 (62.85%), Query Frame = 1
Query:   10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSS--GGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
             PL+ R+  RS A ++ + K+T HRR+K+  ++ H+  +KP LT+ ++  RL +  S ++ SS       F+ + NV H DEKW+Y+ +  +RYY+  G+  P     SK +I K+MFL  V RPR ++S N  FSGKIGIYPFT    A+RSS+NR  GTM T P   V KE  +  +I++V+PDI+A++PR      P    I++QQDNA+PH+  DD E L A S DG+DIR+  QP   PD N+LDLGF
Sbjct:   95 IPLRHRSNIRSLAKSLNVSKSTLHRRIKEGVLRPHTNVIKPTLTHENRRARLEYCLSKITLSSLFSPIPTFHDMFNVVHIDEKWFYMSKPSKRYYLVPGDDEPLRTCKSKKFITKIMFLAAVARPRYDSSGNEVFSGKIGIYPFTTLEPAKRSSKNRVAGTMETKPILSVNKEVTRSWLIEKVLPDIRAKWPR--GHTGP----IFIQQDNAKPHIDVDDSEFLEAASRDGFDIRLCFQPPNSPDLNVLDLGF 341          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A485KBU5_9STRA (Aste57867_2438 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBU5_9STRA)

HSP 1 Score: 194 bits (492), Expect = 2.480e-55
Identity = 113/260 (43.46%), Postives = 153/260 (58.85%), Query Frame = 1
Query:   25 RTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTPQEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF------LDLYSRCRT 774
            RTT +  A+ V +P T+ HR  K   +  HS  LKP LT+ +K  RL+W + FV    G    F+ + +  H DEKW+Y+ + K+  Y+  GE  P     SK +I KVMFL  V RPR N +++  F GKIG + FTE V AQR+SRNRP+GT+VT P  V+++ Y+  ++  V+P IK ++P    S       I +QQDNARPH+   D  +LAA  +DGWDI M  QP   PD N+LDLGF      L   +RCRT
Sbjct:   98 RTTLKRIASIVNMPATSLHRYFKQGLLVRHSSHLKPLLTDANKAARLKWAQKFV----GPDLVFDDMMSYVHIDEKWFYMTRVKRTLYLLPGEEPPHRTTQSKRFITKVMFLSAVARPRWNYNKDEWFDGKIGTWHFTEVVPAQRNSRNRPSGTLVTVPVNVSRDTYRDMLVNNVIPAIKNKWPDARTSC------IVIQQDNARPHVTTTDKGVLAACKADGWDIAMECQPPNSPDLNVLDLGFFRAIQSLQERTRCRT 347          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI00053F3BA8 (uncharacterized protein LOC104908869 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3BA8)

HSP 1 Score: 189 bits (481), Expect = 7.400e-55
Identity = 110/257 (42.80%), Postives = 160/257 (62.26%), Query Frame = 1
Query:    1 LQPFPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGT-RKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGFLD 753
            L   PL+ RTT RS AAA+G+  +T +R MK   ++ H+  +KP LT   KL R+ W  + +  ++  T  KF+ + N+ H DEKW+ + +  QRYY+   E  P     SK +I KVMF GV+ RP   +   + + GKIGIYPF +KV A+R S NR  GT+ T P   +TKE  ++K+I+ V+P IK ++P P A        IW+QQDNARPH+ + D + + A +SDG+++R+VNQP + PD N+LDLGF +
Sbjct:   31 LMTIPLRERTTLRSTAAALGMHNSTLYRLMKRGALRKHTNTMKPHLTQSHKLARVLWCLNAIIPATLNTIPKFSHMYNMIHIDEKWFCMSRIMQRYYLGPTEKAPHRTCKSKRFIVKVMFEGVMSRPHITSEGVSIWDGKIGIYPFVDKVPAKRRSNNREAGTLETKPITSITKEVMRQKLIQSVIPAIKQKWP-PYACKD-----IWIQQDNARPHIDSTDADFIEAATSDGFNMRLVNQPAQSPDLNVLDLGFFN 281          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A834LPB9_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LPB9_RHOSS)

HSP 1 Score: 190 bits (482), Expect = 3.110e-54
Identity = 112/252 (44.44%), Postives = 156/252 (61.90%), Query Frame = 1
Query:   10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRK-FNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVT-TPQEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
             P   RT  RS A A+ +P+TT HRR+KD  ++ H+  LKP L+   K  RL++  S +  SS  ++  F  + N  H DEKW+++ +E +RYY+   E  P     SK +I KVMFL  V RPR +T++N +FSGKIGI+PFT K  A+R+S+NR  GT+ T     VTKE  +K +I++V+P I+A++PR     +     I +QQDNARPH+   D E L   S DG+DIR+  QP   PD N+LDLGF
Sbjct:  100 LPYSQRTNIRSIAEALEVPRTTIHRRVKDGVMRPHTNPLKPCLSEEGKRARLQFCLSMLEPSSLQSQPTFKNMYNYVHIDEKWFFMTKESERYYLLPHENEPLRTCKSKHFITKVMFLAAVARPRFDTTRNQEFSGKIGIFPFTYKEPAKRTSKNRVAGTLETKVVVSVTKEIIRKCLIEKVLPAIRAKWPRGNGIET-----ILIQQDNARPHIREFDAEFLEEASKDGFDIRLSFQPPNSPDLNVLDLGF 346          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI00125DF384 (uncharacterized protein LOC116015901 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125DF384)

HSP 1 Score: 189 bits (479), Expect = 3.940e-54
Identity = 111/252 (44.05%), Postives = 154/252 (61.11%), Query Frame = 1
Query:   10 FPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFV-STSSGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTPQE-VTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
             PL  RTT RS A A+ + KT+ HRR+K+  +KSHS  +KP LT  ++  RL++  S + S S      F  + +  H DEKW++L +  Q+YY+  GE  P     SK +I KVMFL  V RPR ++ +N  F GKIGI+PF  K  A+R S+NR  GT+VT P E V KE  +K +I  V+P I+A++      +   ++ I++QQDNARPH+  +D E L A   DG+DIR+  QP   PD N+LDLGF
Sbjct:   70 IPLNRRTTIRSMATALNMSKTSLHRRVKEGSLKSHSNAIKPLLTEENRKVRLQFCISMIDSNSPPHNPSFIDMYDRVHIDEKWFFLSKSSQKYYLLPGEDEPYRTCKSKKFIAKVMFLCAVARPRFDSGRNEMFDGKIGIFPFIYKEAAKRRSKNREAGTLVTKPIESVNKEVTRKWLIDYVLPAIRAKW------SLSSSKSIFIQQDNARPHISVNDAEFLEAAQKDGFDIRLTCQPPNSPDMNVLDLGF 315          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: A0A6A4Z2B2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z2B2_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.110e-53
Identity = 106/253 (41.90%), Postives = 152/253 (60.08%), Query Frame = 1
Query:    1 LQPFPLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTPQEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
            LQ  P   RTT RS AAA+ +P++T H   K      +S  ++PALT+ +K+ R++W   FV   +     F+ + +  H DEKW++    K+ YY+  GE  P     SK +I KVMFL  V RPR ++++   F GK+G + FT KV A R SRNRP GT+VT+P  VT+  YK  ++  V+P IK ++P      S +++ I +QQDNARPH+   D +++AA +SDGW + +  QP   PD NILDLGF
Sbjct:  111 LQALPKAKRTTFRSIAAALNMPRSTLHAYYKRGIFVKYSSSVRPALTDSNKIVRVKWALDFVHALNENEYVFSDMMDYVHVDEKWFFATTVKRTYYLAPGEEPPHRTCKSKKFITKVMFLSAVARPRWDSAKGELFDGKLGTWHFTTKVPAARGSRNRPAGTLVTSPVSVTRSVYKAMLLDHVIPAIKRKWP------STESKKITIQQDNARPHIPPRDHDIVAACTSDGWAMEVKYQPPNSPDMNILDLGF 357          
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Match: UPI0007EF4F0C (uncharacterized protein LOC108212769 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF4F0C)

HSP 1 Score: 187 bits (475), Expect = 3.020e-53
Identity = 107/251 (42.63%), Postives = 152/251 (60.56%), Query Frame = 1
Query:   13 PLKLRTTQRSGAAAVGLPKTTFHRRMKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSG-GTRKFNGIRNVAHADEKWWYLCQEKQRYYVFDGETLP----SSKSYIPKVMFLGVVGRPRRNTSQNTDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTP-QEVTKE*YKKKMIKQVVPDIKARFPRPPASASPDNRIIWVQQDNARPHLINDDPELLAAMSSDGWDIRMVNQPDKIPDTNILDLGF 747
            P   RT  RS A A+ L K+T HRR+++  ++ H+  +KP LT  +K  RLR+  S ++         F+ + N  H DEKW+ + ++ QRYY+   E  P     S ++I K+MFL VV RPR +T +NT F GKIGI+PF  K  A+R S+NRP GT+ T P   +TK+  +K MI +V+P I++ +P           II+VQQDNA+PH+  DDPE + A   +G+DIR+  QP   PD N+LDLGF
Sbjct:   98 PFNRRTNIRSLACAIHLSKSTLHRRIREGHLRPHTNSIKPYLTEENKRARLRFCLSMITHDMNLNISLFSSMLNSIHIDEKWFTMTKKNQRYYILPDENPPLRTCKSSNFIDKIMFLCVVARPRFDTLRNTMFEGKIGIFPFITKEPAKRKSKNRPAGTLETKPINPITKDVTRKMMIDKVLPAIESMWP-----GGNSGGIIFVQQDNAKPHISVDDPEFVEAAKRNGFDIRLCFQPPNSPDLNVLDLGF 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73355.15028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A834L4M7_RHOSS8.250e-5945.16HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Rh... [more]
A0A834FTG5_RHOSS4.380e-5745.56Uncharacterized protein n=3 Tax=Rhododendron simsi... [more]
UPI000CD873B31.510e-5645.63uncharacterized protein LOC111883545 n=1 Tax=Lactu... [more]
UPI000CD9DCB31.690e-5544.27uncharacterized protein LOC111916103 n=1 Tax=Lactu... [more]
A0A485KBU5_9STRA2.480e-5543.46Aste57867_2438 protein n=2 Tax=Aphanomyces stellat... [more]
UPI00053F3BA87.400e-5542.80uncharacterized protein LOC104908869 n=1 Tax=Beta ... [more]
A0A834LPB9_RHOSS3.110e-5444.44Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
UPI00125DF3843.940e-5444.05uncharacterized protein LOC116015901 n=1 Tax=Ipomo... [more]
A0A6A4Z2B2_9STRA1.110e-5341.90Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
UPI0007EF4F0C3.020e-5342.63uncharacterized protein LOC108212769 n=1 Tax=Daucu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73355contigH-elongata_contig73355:1431..2216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1e-24
Seed eggNOG ortholog157072.XP_008870373.1
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size774
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73355.15028.1prot_H-elongata_contig73355.15028.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73355 1695..2129 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.4244096-UTR-H-elongata_contig73355:1430..16941622931137.4244096-UTR-H-elongata_contig73355:1430..1694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73355 1431..1694 -
1691679713.8469663-UTR-H-elongata_contig73355:1430..16941691679713.8469663-UTR-H-elongata_contig73355:1430..1694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73355 1431..1694 -
1622931137.4938235-UTR-H-elongata_contig73355:2129..22161622931137.4938235-UTR-H-elongata_contig73355:2129..2216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73355 2130..2216 -
1691679713.8784986-UTR-H-elongata_contig73355:2129..22161691679713.8784986-UTR-H-elongata_contig73355:2129..2216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73355 2130..2216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.4392097-CDS-H-elongata_contig73355:1694..18831622931137.4392097-CDS-H-elongata_contig73355:1694..1883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73355 1695..1883 -
1691679713.857785-CDS-H-elongata_contig73355:1694..18831691679713.857785-CDS-H-elongata_contig73355:1694..1883Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73355 1695..1883 -
1622931137.4712887-CDS-H-elongata_contig73355:1895..21291622931137.4712887-CDS-H-elongata_contig73355:1895..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73355 1896..2129 -
1691679713.8681507-CDS-H-elongata_contig73355:1895..21291691679713.8681507-CDS-H-elongata_contig73355:1895..2129Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73355 1896..2129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73355.15028.1

>prot_H-elongata_contig73355.15028.1 ID=prot_H-elongata_contig73355.15028.1|Name=mRNA_H-elongata_contig73355.15028.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MKDLGVKSHSRFLKPALTNHDKLDRLRWTRSFVSTSSGGTRKFNGIRNVA
HADEKWWYLCQEKQRYYVFDGETLPSSKSYIPKVMFLGVVGRPRRNTSQN
TDFSGKIGIYPFTEKVRAQRSSRNRPTGTMVTTPQEVTKE*
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mRNA from alignment at H-elongata_contig73355:1431..2216-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73355.15028.1 ID=mRNA_H-elongata_contig73355.15028.1|Name=mRNA_H-elongata_contig73355.15028.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at H-elongata_contig73355:1431..2216- (Himanthalia elongata Himel1 dioecious)
CTGCAACCATTCCCGCTGAAGCTGCGCACGACACAGCGGAGCGGAGCTGC AGCGGTCGGGCTCCCGAAGACAACTTTTCACCGCCGCATGAAGGACCTTG GGGTGAAGTCTCACTCGCGTTTCCTGAAGCCGGCTCTTACCAATCATGAC AAGCTGGATCGGCTGAGATGGACGAGAAGCTTCGTTTCGACGTCTTCAGG AGGAACTCGCAAATTCAATGGGATAAGGAACGTGGCTCATGCCGACGAGA AGTGGTGGTACCTTTGCCAAGAGAAGCAGAGGTACTACGTGTTCGACGGC GAGACCTTACCTTCAAGTAAGGTTTAGCATAAGAGCTATATCCCGAAGGT GATGTTTCTTGGAGTTGTTGGGCGGCCGAGGCGCAACACCTCCCAAAACA CCGACTTTTCCGGAAAGATCGGGATCTACCCCTTCACTGAGAAAGTCCGA GCCCAGCGTAGCAGCCGGAACAGGCCCACGGGCACAATGGTCACCACGCC TCAGGAGGTGACGAAGGAATGATACAAAAAGAAGATGATCAAGCAAGTGG TCCCGGACATCAAGGCCCGATTTCCCCGCCCCCCTGCCAGCGCCAGCCCG GATAATAGGATCATTTGGGTGCAGCAAGACAACGCCCGCCCTCACCTGAT CAACGACGACCCAGAGTTGTTGGCTGCAATGTCTTCAGATGGGTGGGACA TTCGAATGGTCAATCAGCCGGACAAAATCCCGGACACCAACATCCTGGAT TTGGGTTTTTTAGATCTGTACAGTCGCTGCAGGACC
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Coding sequence (CDS) from alignment at H-elongata_contig73355:1431..2216-

>mRNA_H-elongata_contig73355.15028.1 ID=mRNA_H-elongata_contig73355.15028.1|Name=mRNA_H-elongata_contig73355.15028.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig73355:1431..2216- (Himanthalia elongata Himel1 dioecious)
ATGAAGGACCTTGGGGTGAAGTCTCACTCGCGTTTCCTGAAGCCGGCTCT
TACCAATCATGACAAGCTGGATCGGCTGAGATGGACGAGAAGCTTCGTTT
CGACGTCTTCAGGAGGAACTCGCAAATTCAATGGGATAAGGAACGTGGCT
CATGCCGACGAGAAGTGGTGGTACCTTTGCCAAGAGAAGCAGAGGTACTA
CGTGTTCGACGGCGAGACCTTACCTTCAAGTAAGATGAAGGACCTTGGGG
TGAAGTCTCACTCGCGTTTCCTGAAGCCGGCTCTTACCAATCATGACAAG
CTGGATCGGCTGAGATGGACGAGAAGCTTCGTTTCGACGTCTTCAGGAGG
AACTCGCAAATTCAATGGGATAAGGAACGTGGCTCATGCCGACGAGAAGT
GGTGGTACCTTTGCCAAGAGAAGCAGAGGTACTACGTGTTCGACGGCGAG
ACCTTACCTTCAAGTAAGAGCTATATCCCGAAGGTGATGTTTCTTGGAGT
TGTTGGGCGGCCGAGGCGCAACACCTCCCAAAACACCGACTTTTCCGGAA
AGATCGGGATCTACCCCTTCACTGAGAAAGTCCGAGCCCAGCGTAGCAGC
CGGAACAGGCCCACGGGCACAATGGTCACCACGCCTCAGGAGGTGACGAA
GGAATGAAGCTATATCCCGAAGGTGATGTTTCTTGGAGTTGTTGGGCGGC
CGAGGCGCAACACCTCCCAAAACACCGACTTTTCCGGAAAGATCGGGATC
TACCCCTTCACTGAGAAAGTCCGAGCCCAGCGTAGCAGCCGGAACAGGCC
CACGGGCACAATGGTCACCACGCCTCAGGAGGTGACGAAGGAATGA
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