mRNA_H-elongata_contig73354.15027.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI) HSP 1 Score: 216 bits (551), Expect = 4.020e-64 Identity = 107/159 (67.30%), Postives = 125/159 (78.62%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY--FKAPEPPPPVYTACHAVHGKIL 471
MNGKRN WEAVN+LPFIDAYRL+AAV E CP TAL EAERNT G+V+EY+HD ++R EMSCNPEIGLADI CTA+ R+VPFSIEPGECF+PELP DA+IP+AGFPSLHVL+V SVEE K+P+N FG+ SRY PPV A+ GK+L
Sbjct: 1 MNGKRNPWEAVNVLPFIDAYRLRAAVKELCPPTALSPQEAERNTRGQVVEYFHDAFVSRKEMSCNPEIGLADIPQCTASSRIVPFSIEPGECFRPELPHDAIIPSAGFPSLHVLTVGSVEERKVPVNCFGTASRYETLVLELKRPPVLPPASALSGKVL 159
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA) HSP 1 Score: 144 bits (363), Expect = 5.780e-37 Identity = 75/135 (55.56%), Postives = 88/135 (65.19%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
MNGKRN WEAVNLLPFIDA RL AAV E CP L +E +RNT G VLEY + +SCNPEIGL+DIR C + + +P+SIE F LP + IP AGFPSL+VL + E I +NVFGS SRY
Sbjct: 547 MNGKRNPWEAVNLLPFIDASRLFAAVHERCPVQLLTPEERKRNTYGAVLEYTYSEHATGTVVSCNPEIGLSDIRQCVSEEKELPWSIESHTSFTSALPLGSTIPLAGFPSLNVLPIEQAEAKPIKLNVFGSESRY 681
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S2UF08_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF08_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.510e-30 Identity = 67/135 (49.63%), Postives = 76/135 (56.30%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
MNGKRN WE VN+L FID L+ VA CP L DE RN+LGKVL Y D N SCN +IGL DI C + V G FKPEL IP GFPSL VL + +VE I +NVFG PS+Y
Sbjct: 78 MNGKRNPWEGVNILSFIDVNLLRETVAAQCPDKVLTPDERSRNSLGKVLCYTFDLTNNDTVPSCNKDIGLIDISKCHSRVDVFEEPKRDGVSFKPELMPGTQIPYPGFPSLLVLPIENVELIGIGLNVFGHPSKY 212
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S2PSP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PSP2_9STRA) HSP 1 Score: 121 bits (303), Expect = 6.780e-29 Identity = 63/135 (46.67%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
MNGKRN WE VN+LPFID LK +A+HCP +AL DE RN +GKV Y +D +N SCN +IGL +I C + ++ FKPEL IP GFPSL+VL + VE +N FG PS+Y
Sbjct: 567 MNGKRNPWEGVNILPFIDGNLLKQTIAKHCPDSALTADERHRNRVGKVYCYTYDAAVNDTVPSCNRDIGLPNIVKCNSRVDIIENLSVSNISFKPELVPGTKIPYPGFPSLNVLPIEHVELRNAGVNCFGFPSKY 701
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK) HSP 1 Score: 119 bits (298), Expect = 3.280e-28 Identity = 65/137 (47.45%), Postives = 78/137 (56.93%), Query Frame = 1
Query: 4 NGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVP---FSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
NGKRN WEAVNLLPFIDA R++AAVA HCP L ++E RN +G VL Y+HDP SCNPEIGL D+ C ++ +P F L +P G+PSL L R V I +N FGS SRY
Sbjct: 425 NGKRNPWEAVNLLPFIDADRMRAAVAAHCPDRLLTEEERRRNRIGPVLLYHHDPANTATIPSCNPEIGLPDLLRCASSIVELPTNAFEDVAEGTLHSALRPGVTLPLPGYPSLATLPRRGVRAEAIGLNCFGSGSRY 561
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.310e-28 Identity = 60/135 (44.44%), Postives = 81/135 (60.00%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
MNGKRN WE VN+LPFID + LK++++++CP L DE RN LGKV Y DP N S N +IGL DI+ C + + + F+P L IP GFPSL+VL + S+E + +N+FG PS+Y
Sbjct: 571 MNGKRNPWEGVNILPFIDVHLLKSSISKYCPDEVLTADERNRNRLGKVYLYTFDPASNDMVPSFNKDIGLPDIQKCNSRVDIFEENDSTDISFRPTLVPGTQIPYPGFPSLNVLPLVSIELIPVGLNIFGMPSKY 705
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A7S1UYY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYY6_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.070e-27 Identity = 62/135 (45.93%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
MNGKRN WE VNLLPFID LK +A P + L DE +RN+ G V Y HDP N S N IGL DI+ C + + CFKPEL +P GFPS++VL + S E K +N FGS S+Y
Sbjct: 10 MNGKRNPWEGVNLLPFIDVKLLKQTIATQVPNSTLTNDERKRNSRGVVFMYEHDPTANETIPSPNTSIGLIDIQRCHSKIEEIDEPDRLDICFKPELVPGTKLPYPGFPSMNVLPIASFELTKTGLNCFGSASKY 144
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A482SU95_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU95_9ARCH) HSP 1 Score: 117 bits (292), Expect = 2.080e-27 Identity = 60/135 (44.44%), Postives = 80/135 (59.26%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
M+GK+N WEAV LL FID +L A CP L E RN GK+L++ +DP + +SCNPEIGL DI HC ++ + FS+ PG+ F +L P AG+PSL L + S++ INVFG+ SRY
Sbjct: 575 MDGKKNPWEAVVLLSFIDEKQLVEAERVFCPVAKLTVTEYNRNQFGKLLQHVYDPNVTDTVLSCNPEIGLGDIHHCHSSLTELDFSLLPGKAFVSKLVEGTEYPIAGYPSLTCLPLASIDIVSQKINVFGTDSRY 709
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: A0A1Z5JKV0_FISSO (5'-3' exoribonuclease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKV0_FISSO) HSP 1 Score: 114 bits (285), Expect = 1.850e-26 Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGEC-FKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
MNGK+N WE VNLLPFID LK+ V + CP + L E RN++G + Y HDP S NP IGL DI C + V+ F P F+P+L S +P GFPSL+VL + S+ K +N FG PS+Y
Sbjct: 551 MNGKKNPWEGVNLLPFIDIALLKSTVEKFCPDSKLSTAELVRNSMGTIYCYKHDPTSIETVTSPNPSIGLPDISVCHSTISVIEFDEGPSTSKFEPKLVSGTQLPYPGFPSLNVLPIASIALTKAGLNCFGVPSKY 686
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC) HSP 1 Score: 113 bits (283), Expect = 3.440e-26 Identity = 61/135 (45.19%), Postives = 77/135 (57.04%), Query Frame = 1
Query: 1 MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEYYHDPRMNRAEMSCNPEIGLADIRHCTAAFRVVPFSIEPGECFKPELPSDAVIPTAGFPSLHVLSVRSVEECKIPINVFGSPSRY 405
MNGKRN WE VN+LPFIDA RLK A+ ++CP L +E RN +G+V Y +D N SCN +IGL +I C + + S E F PEL IP GFPSL+VL + VE +N FG S+Y
Sbjct: 619 MNGKRNPWEGVNILPFIDANRLKDAIKDNCPDRLLTAEERNRNRVGQVFCYSYDEACNDTIPSCNRDIGLPNIEKCHSRVITIDNSSESTVSFSPELIPGTKIPYPGFPSLNVLPIERVELRNAGLNCFGFASKY 753 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73354.15027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73354.15027.1 >prot_H-elongata_contig73354.15027.1 ID=prot_H-elongata_contig73354.15027.1|Name=mRNA_H-elongata_contig73354.15027.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp MNGKRNSWEAVNLLPFIDAYRLKAAVAEHCPRTALRQDEAERNTLGKVLEback to top mRNA from alignment at H-elongata_contig73354:414..2412- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73354.15027.1 ID=mRNA_H-elongata_contig73354.15027.1|Name=mRNA_H-elongata_contig73354.15027.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1999bp|location=Sequence derived from alignment at H-elongata_contig73354:414..2412- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73354:414..2412- >mRNA_H-elongata_contig73354.15027.1 ID=mRNA_H-elongata_contig73354.15027.1|Name=mRNA_H-elongata_contig73354.15027.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig73354:414..2412- (Himanthalia elongata Himel1 dioecious)back to top |