mRNA_H-elongata_contig73351.15025.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig73351.15025.1
Unique Name	mRNA_H-elongata_contig73351.15025.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: G3G4N4_9PHAE (T-complex protein 1 epsilon subunit (Fragment) n=22 Tax=Fucaceae TaxID=3010 RepID=G3G4N4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 6.400e-13
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 1

Query:   22 ARLPARTCSTPLISSAIRETATLQLISAEPPPYTIRLSLIR 144
            A+L    CSTP ISSAIRETATLQLISAEPPPYTIRLSLIR
Sbjct:   78 AKLRTAYCSTPFISSAIRETATLQLISAEPPPYTIRLSLIR 118

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: D7FI32_ECTSI (T-complex protein 1 subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI32_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.970e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ
Sbjct:  408 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 441

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A7R9ZR80_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZR80_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.190e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            LIKD R+VYGGGSAE+SCS+AVS+ AD + GV+Q
Sbjct:   86 LIKDNRVVYGGGSAEVSCSLAVSKHADSVTGVDQ 119

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A7T8KAJ2_CALRO (Uncharacterized protein n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8KAJ2_CALRO)

HSP 1 Score: 53.9 bits (128), Expect = 7.390e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            L++D RIVYGGG+AEISCSVAV + AD+IK +EQ
Sbjct:   19 LVRDSRIVYGGGAAEISCSVAVGKEADKIKTIEQ 52

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A0N4UE63_DRAME (T-complex protein 1 subunit epsilon n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UE63_DRAME)

HSP 1 Score: 55.8 bits (133), Expect = 8.140e-8
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            LIKD RIVYGGG+AEISCS+AV+  AD+I+GVEQ
Sbjct:  407 LIKDNRIVYGGGAAEISCSLAVANEADKIEGVEQ 440

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A7S3PR08_9STRA (T-complex protein 1 subunit epsilon n=3 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR08_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.140e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            LI+D RIVYGGGSAEI+CS+AVS  ADE+ G+EQ
Sbjct:  408 LIRDNRIVYGGGSAEIACSIAVSDYADEVGGIEQ 441

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A7S1GCY1_9STRA (T-complex protein 1 subunit epsilon n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GCY1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.140e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            LIKD RIVYGGGSAEI+C++AVS MAD + G+EQ
Sbjct:  408 LIKDNRIVYGGGSAEIACAIAVSEMADTVGGMEQ 441

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A7R9VLE3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLE3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 8.700e-8
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            LI+D R+VYGGGSAEI+CSVAVS+ AD + GV+Q
Sbjct:   49 LIRDNRVVYGGGSAEIACSVAVSKYADTVAGVDQ 82

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BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A168REH2_ABSGL (T-complex protein 1 subunit epsilon n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168REH2_ABSGL)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            L++D R+VYGGG+AEISCS+AVS++ADEI  +EQ
Sbjct:  397 LVRDNRVVYGGGAAEISCSLAVSKVADEISSIEQ 430

[Close]

BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Match: A0A0N5AXS3_9BILA (T-complex protein 1 subunit epsilon n=2 Tax=Oxyuridae TaxID=51026 RepID=A0A0N5AXS3_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = -2

Query:   42 LIKDKRIVYGGGSAEISCSVAVSRMADEIKGVEQ 143
            L++D RIVYGGG+AEISCS+ V++ AD+IKGVEQ
Sbjct:  411 LVRDNRIVYGGGAAEISCSIEVAKEADKIKGVEQ 444

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot

BLAST of mRNA_H-elongata_contig73351.15025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
G3G4N4_9PHAE	6.400e-13	85.37	T-complex protein 1 epsilon subunit (Fragment) n=2...	[more]
D7FI32_ECTSI	1.970e-12	100.00	T-complex protein 1 subunit epsilon n=2 Tax=Ectoca...	[more]
A0A7R9ZR80_9STRA	7.190e-8	70.59	Hypothetical protein n=1 Tax=Craspedostauros austr...	[more]
A0A7T8KAJ2_CALRO	7.390e-8	70.59	Uncharacterized protein n=1 Tax=Caligus rogercress...	[more]
A0A0N4UE63_DRAME	8.140e-8	76.47	T-complex protein 1 subunit epsilon n=1 Tax=Dracun...	[more]
A0A7S3PR08_9STRA	8.140e-8	73.53	T-complex protein 1 subunit epsilon n=3 Tax=Aplano...	[more]
A0A7S1GCY1_9STRA	8.140e-8	73.53	T-complex protein 1 subunit epsilon n=1 Tax=Bicoso...	[more]
A0A7R9VLE3_9STRA	8.700e-8	70.59	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A168REH2_ABSGL	1.110e-7	67.65	T-complex protein 1 subunit epsilon n=1 Tax=Absidi...	[more]
A0A0N5AXS3_9BILA	1.110e-7	70.59	T-complex protein 1 subunit epsilon n=2 Tax=Oxyuri...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig73351	contig	H-elongata_contig73351:1065..1208 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	144
Cds size	138
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931137.1244602-CDS-H-elongata_contig73351:1064..1202	1622931137.1244602-CDS-H-elongata_contig73351:1064..1202	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig73351 1065..1202 -
1691679713.776293-CDS-H-elongata_contig73351:1064..1202	1691679713.776293-CDS-H-elongata_contig73351:1064..1202	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig73351 1065..1202 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931137.1499872-UTR-H-elongata_contig73351:1202..1208	1622931137.1499872-UTR-H-elongata_contig73351:1202..1208	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig73351 1203..1208 -
1691679713.7858224-UTR-H-elongata_contig73351:1202..1208	1691679713.7858224-UTR-H-elongata_contig73351:1202..1208	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig73351 1203..1208 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig73351.15025.1	prot_H-elongata_contig73351.15025.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig73351 1065..1202 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig73351:1065..1208-
coding sequence from alignment at H-elongata_contig73351:1065..1208-

protein sequence of mRNA_H-elongata_contig73351.15025.1

>prot_H-elongata_contig73351.15025.1 ID=prot_H-elongata_contig73351.15025.1|Name=mRNA_H-elongata_contig73351.15025.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MVLLPARLPARTCSTPLISSAIRETATLQLISAEPPPYTIRLSLIR

mRNA from alignment at H-elongata_contig73351:1065..1208-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig73351.15025.1 ID=mRNA_H-elongata_contig73351.15025.1|Name=mRNA_H-elongata_contig73351.15025.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig73351:1065..1208- (Himanthalia elongata Himel1 dioecious)
ATTGGAATGGTTTTGTTACCCGCGCGATTGCCTGCTCGTACCTGCTCTAC
ACCCTTGATTTCGTCGGCCATACGGGAGACCGCGACGCTGCAGCTGATCT
CTGCCGAGCCACCACCGTACACGATACGCTTGTCCTTGATCAGG

Coding sequence (CDS) from alignment at H-elongata_contig73351:1065..1208-

>mRNA_H-elongata_contig73351.15025.1 ID=mRNA_H-elongata_contig73351.15025.1|Name=mRNA_H-elongata_contig73351.15025.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig73351:1065..1208- (Himanthalia elongata Himel1 dioecious)
ATGGTTTTGTTACCCGCGCGATTGCCTGCTCGTACCTGCTCTACACCCTT
GATTTCGTCGGCCATACGGGAGACCGCGACGCTGCAGCTGATCTCTGCCG
AGCCACCACCGTACACGATACGCTTGTCCTTGATCAGGATGGTTTTGTTA
CCCGCGCGATTGCCTGCTCGTACCTGCTCTACACCCTTGATTTCGTCGGC
CATACGGGAGACCGCGACGCTGCAGCTGATCTCTGCCGAGCCACCACCGT
ACACGATACGCTTGTCCTTGATCAGG