mRNA_H-elongata_contig7335.15023.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig7335.15023.1
Unique Name	mRNA_H-elongata_contig7335.15023.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig7335.15023.1 vs. uniprot
Match: A0A6H5KG63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG63_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 3.780e-71
Identity = 122/175 (69.71%), Postives = 141/175 (80.57%), Query Frame = 3

Query:    9 IPGASLASMKEYISDPSRIVYACWDRDYVTPMGDGLFRVGLKGQRFLTISIDMSVDIKFSAAPNGNVQCKSVGYSLDDMGKILGQRFVDTFSFELEGELRVEEKEAKVRALRLKNTLLSGDVALTIGGKMPSLLAATPEQLVKTACLGINQQVLGYVLRTFVGTVAGDYRQWARN 533
            I GA L SM+ YISDPSRIVYACW+   +T MGDG+FR+  +GQ FL+ISIDMSVDI+   A +G +QCKSVGYS+DDM K+LGQ FVDTF  ELEGELRVEE   KVRAL LKNT L GDVA+TIGGKMP LL+ATPE LVK+A LGIN +VL YV  TFV TVAGDYR+W+R+
Sbjct:  105 ISGAPLESMQAYISDPSRIVYACWEHKDITDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGELRVEETVTKVRALSLKNTRLGGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYREWSRD 279

[Close]

BLAST of mRNA_H-elongata_contig7335.15023.1 vs. uniprot
Match: D7FNW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW2_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 3.850e-71
Identity = 122/177 (68.93%), Postives = 142/177 (80.23%), Query Frame = 3

Query:    9 IPGASLASMKEYISDPSRIVYACWDRDYVTPMGDGLFRVGLKGQRFLTISIDMSVDIKFSAAPNGNVQCKSVGYSLDDMGKILGQRFVDTFSFELEGELRVEEKEAKVRALRLKNTLLSGDVALTIGGKMPSLLAATPEQLVKTACLGINQQVLGYVLRTFVGTVAGDYRQWARNVK 539
            I GA L SM EYIS+PSRIVYACW+   +  MGDG+FR+  +GQ FL+ISIDMSVDI+   A +G +QCKSVGYS+DDM K+LGQ FVDTF  ELEG+LRVEE   KVRAL LKNT LSGDVA+TIGGKMP LL+ATPE LVK+A LGIN +VL YV  TFV TVAGDYR+W+R+ K
Sbjct:   44 ISGAPLESMLEYISEPSRIVYACWEHKDIMDMGDGVFRMAFRGQSFLSISIDMSVDIQLWTAEDGTIQCKSVGYSVDDMAKLLGQEFVDTFFLELEGKLRVEETVTKVRALSLKNTRLSGDVAVTIGGKMPGLLSATPEPLVKSAALGINNKVLEYVSNTFVSTVAGDYRKWSRDQK 220

[Close]

BLAST of mRNA_H-elongata_contig7335.15023.1 vs. uniprot
Match: A0A6H5K0I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.910e-6
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 3

Query: 1713 QHTELCEVLANLDIVPGRPVHQAAIDATQA*VELEEHKEIADTLLLDAREI 1865
            Q  ELCEVLANLDIVPG+P H A ++AT A   LEE  E+   L   A+++
Sbjct:   17 QDQELCEVLANLDIVPGQPAHMAVVNATLAWAGLEEQTEVQQALHQGAQDV 67

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig7335.15023.1 vs. uniprot

BLAST of mRNA_H-elongata_contig7335.15023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5KG63_9PHAE	3.780e-71	69.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FNW2_ECTSI	3.850e-71	68.93	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K0I4_9PHAE	5.910e-6	52.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig7335	contig	H-elongata_contig7335:452..3319 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Bacteria
Seed ortholog score	71.2
Seed ortholog evalue	5.3e-10
Seed eggNOG ortholog	489825.LYNGBM3L_58630
EggNOG free text desc.	Protein of unknown function (DUF1997)
EggNOG OGs	1G4ZU@1117,1HAT6@1150,28NJH@1,2ZBKN@2
COG Functional cat.	S
Best tax level	Oscillatoriales
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	2
Model size	2465
Cds size	525
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig7335.15023.1	prot_H-elongata_contig7335.15023.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig7335 484..1411 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931136.751698-UTR-H-elongata_contig7335:451..483	1622931136.751698-UTR-H-elongata_contig7335:451..483	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig7335 452..483 +
1691679713.6181362-UTR-H-elongata_contig7335:451..483	1691679713.6181362-UTR-H-elongata_contig7335:451..483	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig7335 452..483 +
1622931136.849874-UTR-H-elongata_contig7335:1411..3319	1622931136.849874-UTR-H-elongata_contig7335:1411..3319	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig7335 1412..3319 +
1691679713.6508412-UTR-H-elongata_contig7335:1411..3319	1691679713.6508412-UTR-H-elongata_contig7335:1411..3319	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig7335 1412..3319 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931136.769827-CDS-H-elongata_contig7335:483..846	1622931136.769827-CDS-H-elongata_contig7335:483..846	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig7335 484..846 +
1691679713.6301796-CDS-H-elongata_contig7335:483..846	1691679713.6301796-CDS-H-elongata_contig7335:483..846	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig7335 484..846 +
1622931136.7853944-CDS-H-elongata_contig7335:1249..1411	1622931136.7853944-CDS-H-elongata_contig7335:1249..1411	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig7335 1250..1411 +
1691679713.6383293-CDS-H-elongata_contig7335:1249..1411	1691679713.6383293-CDS-H-elongata_contig7335:1249..1411	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig7335 1250..1411 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig7335:452..3319+
coding sequence from alignment at H-elongata_contig7335:452..3319+

protein sequence of mRNA_H-elongata_contig7335.15023.1

>prot_H-elongata_contig7335.15023.1 ID=prot_H-elongata_contig7335.15023.1|Name=mRNA_H-elongata_contig7335.15023.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp
MKEYISDPSRIVYACWDRDYVTPMGDGLFRVGLKGQRFLTISIDMSVDIK
FSAAPNGNVQCKSVGYSLDDMGKILGQRFVDTFSFELEGELRVEEKEAKV
RALRLKNTLLSGDVALTIGGKMPSLLAATPEQLVKTACLGINQQVLGYVL
RTFVGTVAGDYRQWARNVKDEAAR*

mRNA from alignment at H-elongata_contig7335:452..3319+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig7335.15023.1 ID=mRNA_H-elongata_contig7335.15023.1|Name=mRNA_H-elongata_contig7335.15023.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2868bp|location=Sequence derived from alignment at H-elongata_contig7335:452..3319+ (Himanthalia elongata Himel1 dioecious)
AGACCCCGATTCCTGGCGCGTCGCTGGCCTCCATGAAAGAGTACATCTCG
GATCCTTCTCGGATCGTCTACGCCTGCTGGGATCGTGACTATGTCACTCC
GATGGGGGATGGACTCTTCCGGGTGGGCCTCAAGGGCCAGAGGTTCTTGA
CTATCTCCATCGACATGTCAGTGGACATTAAGTTCTCGGCGGCGCCCAAC
GGGAACGTTCAGTGCAAGTCGGTCGGGTATTCCTTAGATGACATGGGCAA
GATTTTGGGTCAAAGATTTGTAGACACGTTCTCTTTTGAGCTAGAAGGCG
AGCTGAGGGTGGAGGAGAAGGAGGCGAAAGTGCGCGCGCTGAGGCTGAAG
AATACGCTCTTGAGCGGGGATGTTGCCCTTACCATTGGCGGCAAGGTAGG
TAGCGCTTGATATGTGAGCTATGCAGGGGGTTGGGGGATGCAGGGTCATT
TACTATAGTCGATATCAGCTACCGTGCGACGCCCTCTAGGTACAGTTCTG
CCACACAGGTTTCAGCCTCCTCGACGGCAACCGTTTGGCCCCCGCACCCA
GCCATGAATCGCTTACTTGCATTGATCGTCTTTCCGTTGTGCCTCCATAA
GCCATGAATACCCTTGATATATTAATGTATATATGTATGAAGTAACGCCC
CAACAATAAAACGCCCCCAACCCTTGTGGGTACACCCTTCCTCCCATTTT
GTTTGGGGCAAAGGACAATACAGTATTAATAGTGCAGTAGTGGGCACAGA
AATCCGTCATCACATCGGCCAAATCTGACTCGTTCGCGTTGCTTCCAGAT
GCCAAGCCTCCTGGCCGCCACGCCGGAGCAGTTAGTCAAGACGGCGTGTC
TAGGCATCAACCAGCAGGTGCTGGGGTACGTGCTGCGCACCTTTGTCGGG
ACCGTCGCGGGAGACTACCGTCAGTGGGCCAGGAACGTCAAGGACGAGGC
GGCGCGGTGAAAAACGAACCCTGGAACCTTGTCCAAGCAAAAAAAAATGC
GCGCGCGCGTTGCACGATTTAATGAAATTATTTTGTATTTTTAGAGGCGG
AGTTTCTCTTTTGGTCAAAATAATTTACAAGTGTCTTGTCCTCAGTGCTC
GGTGGAGGTGAAACGGAGGTAGAGGGGCATTCCTGCTGCGAGTTCGGAAT
GAGGACGAGTTCGGTCGCTAGAAGTAAGCTCGATCAAGTTGCCTCATACA
TTTAGACCCTTCTGAATCGCCGCGCCCCAGTGATCTTAAGGGGTAGCCTG
CACGTTATGTTCATCAGTTTGTAAAGCAGTTCAGAGTTCGAATCTCGGTG
GAGCGGGCGGGGACGGGGGGTTCTTGTAGAGAAAAGGAGGGCGAGAGAAC
GTGAGGTGGAGTTCCACTATTGGTTGGCGAGGCGTGGCGCAGGAGGTATA
GTAAACTTACATCGCAATAAAAAGAGTAGCGTAGGCGGGATTGGGCGGCG
TTGCGATAAGTGGGATTTGATATTATAAGCCTATAATGGCGTACGTTGAA
CGATCCCATCGGGCAAAACTTGAGATCAAACTAGAACAGCATTCACTTGA
GATGAAGTCATAGAAATAAGTGTGTGTGGAGGGGGGGAGGGTCGTGTCTA
CTCTGGTAAACATGTCCCTTACAACCTCGAGCACGAAGGCTGTACAGTAG
GGGTTCCACTCTAAGACGGTCGAAAGCCTGTGTCATGGCATCGATACACT
TTAGTAGGATCACGTTACTATTCAGGAACCCTCCACGACTAATAGGGGTC
ACTCAAAGGTAAACTAATGGATACATTCGAAGCTTACGATAGTTGGTCCC
CTGGACTGTACCTCTCATGGTGCTAAGAAGGCATGGATGTTCGGACAGTT
CTGGTGAGTTCATTCGTTTTTTGAAAGAAAAATCTTTAGACCCTGGGACT
GTGGTTCTGGTGGCTGCCACAAAACACTCGATTTGCTGGACAGGGGGCGC
CCAGCAACGCTCTCCCCGGCACACGGCATACGAGGCTGAGCTCTCACAAG
CCGCAGGCAAGGGCCTGGTTCACGGGGCTAAGGACGAAGTGGGGGGGGCG
GAACGTACGGCTGCACTCAACGCCCTGAGCGTCGGCGTGAATGAGGCGGC
GTAAGAGTCAGGTGTCAACACACGGAGTTGTGCGAGGTCCTGGCGAACCT
CGACATCGTTCCGGGAAGGCCTGTCCATCAGGCGGCCATCGACGCCACTC
AAGCGTAGGTAGAGCTGGAGGAACATAAGGAGATCGCCGATACTCTTCTG
CTGGACGCGCGAGAAATAGAGGGGGGTTTTCATAAAAATGCTGCAGGAGA
AGGTGAATAACGCCTTAAATGAGGTAGACAATACGTCCGACGACGAAGAG
CTATATGACATCGACGACGGCGGCAAGAACACGCAATAGGGGCGGAAGGA
TATGCTGCCGCAACCGGCACAAGCGGAACTATCTGATTTATTCGGTACAC
TGAAAAAAATATTGCTCAGCAGCCGTGTGGCAATGTCAAATTGGAAGGGT
TTTTGCGAAATACTTCCTTGGAGCATACTTCCCACAAGGACGCGGCAGAT
ATATATAAGGGAGTCCTCAACTTACTCAAGCTAGATGATATGTATTTGAC
GTGGCTGCAGTAGACTGTCGTCATGTACACTTACCTTAGGTGTGATAGAT
ACTGTAGCCTATTTGGGCTATAGGCCTGTAACGTGTTTGTTGAGATATCT
TCCCGTTCCACGCGAGTGTACGGTACAATCGCTATACAAATATCTATACA
TTACCTAAAATTGAAAGTTGGTTCGAGTCTTTGGCCGCTCTATATGATTT
TATGGCGGAGCTCGAGCTGATAGGGTGTGCTGCCAGTCTTTGGGGGAAAT
ATGAGATCGGAACGAGAT

Coding sequence (CDS) from alignment at H-elongata_contig7335:452..3319+

>mRNA_H-elongata_contig7335.15023.1 ID=mRNA_H-elongata_contig7335.15023.1|Name=mRNA_H-elongata_contig7335.15023.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig7335:452..3319+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGAGTACATCTCGGATCCTTCTCGGATCGTCTACGCCTGCTGGGA
TCGTGACTATGTCACTCCGATGGGGGATGGACTCTTCCGGGTGGGCCTCA
AGGGCCAGAGGTTCTTGACTATCTCCATCGACATGTCAGTGGACATTAAG
TTCTCGGCGGCGCCCAACGGGAACGTTCAGTGCAAGTCGGTCGGGTATTC
CTTAGATGACATGGGCAAGATTTTGGGTCAAAGATTTGTAGACACGTTCT
CTTTTGAGCTAGAAGGCGAGCTGAGGGTGGAGGAGAAGGAGGCGAAAGTG
CGCGCGCTGAGGCTGAAGAATACGCTCTTGAGCGGGGATGTTGCCCTTAC
CATTGGCGGCAAGATGAAAGAGTACATCTCGGATCCTTCTCGGATCGTCT
ACGCCTGCTGGGATCGTGACTATGTCACTCCGATGGGGGATGGACTCTTC
CGGGTGGGCCTCAAGGGCCAGAGGTTCTTGACTATCTCCATCGACATGTC
AGTGGACATTAAGTTCTCGGCGGCGCCCAACGGGAACGTTCAGTGCAAGT
CGGTCGGGTATTCCTTAGATGACATGGGCAAGATTTTGGGTCAAAGATTT
GTAGACACGTTCTCTTTTGAGCTAGAAGGCGAGCTGAGGGTGGAGGAGAA
GGAGGCGAAAGTGCGCGCGCTGAGGCTGAAGAATACGCTCTTGAGCGGGG
ATGTTGCCCTTACCATTGGCGGCAAGATGCCAAGCCTCCTGGCCGCCACG
CCGGAGCAGTTAGTCAAGACGGCGTGTCTAGGCATCAACCAGCAGGTGCT
GGGGTACGTGCTGCGCACCTTTGTCGGGACCGTCGCGGGAGACTACCGTC
AGTGGGCCAGGAACGTCAAGGACGAGGCGGCGCGGTGAATGCCAAGCCTC
CTGGCCGCCACGCCGGAGCAGTTAGTCAAGACGGCGTGTCTAGGCATCAA
CCAGCAGGTGCTGGGGTACGTGCTGCGCACCTTTGTCGGGACCGTCGCGG
GAGACTACCGTCAGTGGGCCAGGAACGTCAAGGACGAGGCGGCGCGGTGA