mRNA_H-elongata_contig73318.15018.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73318.15018.1
Unique NamemRNA_H-elongata_contig73318.15018.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: D7FX88_ECTSI (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX88_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 5.730e-135
Identity = 193/310 (62.26%), Postives = 239/310 (77.10%), Query Frame = 1
Query:    1 CGTTGGCATTETCNDEDYAGGCDTPLQYVCEHQLPGLNVCESPPLTTMLPCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDD-SFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLMFYQIHDLGPNTR----TPEESLQESLEAYPDLWIAGSVIPSLGEARGRVVLANNMPREEQNNYDLETLDGVSYKKDLIRDFFLEGGGASA-GDMFRVNYFSGSGIFVYPLTVAAGLRTVFQGTNEVLFEFAEGFLGIAMFDFIVEDAITHLVAQQ 912
            CG TGGCAT +TC  +     C  P  YVCEHQLPGL+VCESPP+ +M PCWMS L   L L +IS+PGTHDTMSKG SACLQ G  NYVHTQAWSLRTMLD GVRA+D+R+R   D S +LEHGIVELPY FD DVRDVL +FL++NPTE V+MFYQ++DL         T E++LQ S+  YPDLW+ G+V+P+L EARG+ VL  +M +EEQN+++L + + V+ KK L+RDFFLEGGG  A G  FR+NY SG+G +VYPLTVAAGL++V+QGTNEV+FEF+ G LG+ MFDF+ EDA+ H+VAQQ
Sbjct:   62 CGVTGGCATLDTCGSDSSDADCAAPDSYVCEHQLPGLSVCESPPVASMQPCWMSGLDGALRLNQISLPGTHDTMSKGISACLQEGQANYVHTQAWSLRTMLDTGVRAIDVRIRRKSDLSLVLEHGIVELPYGFDVDVRDVLASFLTDNPTETVVMFYQMNDLAGEDSSGGVTAEDTLQASMSQYPDLWLDGAVVPTLEEARGKAVLPTDMGQEEQNDFNLSSFEAVATKKGLVRDFFLEGGGVPADGGPFRLNYLSGTGTYVYPLTVAAGLKSVYQGTNEVVFEFSGGSLGVVMFDFVGEDAVAHVVAQQ 371          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: UPI001F2D45DE (phosphatidylinositol-specific phospholipase C domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F2D45DE)

HSP 1 Score: 130 bits (327), Expect = 1.480e-30
Identity = 96/272 (35.29%), Postives = 141/272 (51.84%), Query Frame = 1
Query:  133 LTTMLPCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLMFYQIHDLGPN-TRTPEESLQESLEAYPD-------LWIAGSVIPSLGEARGRVVLANNMPREE----------QNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIFVYPLTVAAGLRTV---FQGTNEVLFEFAEGF----LGIAMFDF 873
            + T  P WMS +  G SL  +S+PGTHDTM+  S     GG  +   TQ+  LR+ LDAG+RALDIR RH+D++F + HG+V L   FD+ +R  ++ FL+ NPTE V+M  +      N TRT      ++ EAY D       LW  GS +P+LGE RG++V+ ++               Q+++ +  L  +  K   +RD        + G +F VN+ SGS    YPL VA G+  +    +G N+   +   G      G+ M DF
Sbjct:   27 IETSHPTWMSWVPGGTSLAALSLPGTHDTMAYQS----YGG--DLTQTQSLDLRSQLDAGIRALDIRCRHIDNAFTIHHGVVYLHVNFDDVLRTTIQ-FLNANPTETVVMRVKKEHTEENVTRT----FAQTFEAYRDQPAYSPYLW-RGSHVPTLGEVRGKIVILDDFAGGAYGIPWGAISLQDDWTVSQLADIDDKWFKVRDHLARTNTGAPGTLF-VNFLSGSSALAYPLHVAGGINILGVQTRGVNDYAIDHLVGGNVQRAGVMMMDF 285          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: A0A511T7G9_MYXFU (1-phosphatidylinositol phosphodiesterase n=4 Tax=Myxococcus TaxID=32 RepID=A0A511T7G9_MYXFU)

HSP 1 Score: 128 bits (321), Expect = 1.060e-29
Identity = 97/272 (35.66%), Postives = 144/272 (52.94%), Query Frame = 1
Query:  121 ESPPLTTMLPCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLM-FYQIHDLGPNTRTPEESLQ--ESLEAY-PDLWIAGSVIPSLGEARGRVVLANNMPR----------EEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIFVYPLTVAAGLRTV---FQGTNEVLFEFAEGFL----GIAMFDF 873
            +S  + T  P WMS +S+  SL  +SIPGTHDTM+  S     GGS     TQ+  LR  LDAGVRALDIR RH+ D F + HG+V L   FD+ +R  ++ FL++NPTE V+M   + H     TR+  ++ +      AY P LW  GS +P+LGE RGR+V+ ++             + Q+++ +  L  +  K + +R       G +   +F VN+ SG+    +PL VA G+  +   ++G N+   +   G      GI M DF
Sbjct:   33 DSGSIETTHPSWMSWVSNSTSLASLSIPGTHDTMAYQS----YGGSLT--QTQSLDLRKQLDAGVRALDIRCRHIGDRFTIHHGVVYLHVNFDDVLRTTIQ-FLNDNPTETVVMRVKREHTEEDITRSFSQTFEWYRDQPAYSPYLW-RGSHVPTLGEVRGRIVVLDDFAGGAYGIPWGALDLQDDWTVSQLADIDDKWNKVRAHLDRTQGGAPSKLF-VNFLSGASAMAHPLHVAGGINVLGIGYRGVNDFAIDHLVGGYAQRAGILMMDF 295          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: A0A085WNG0_9DELT (1-phosphatidylinositol phosphodiesterase n=1 Tax=Hyalangium minutum TaxID=394096 RepID=A0A085WNG0_9DELT)

HSP 1 Score: 127 bits (319), Expect = 1.150e-29
Identity = 102/284 (35.92%), Postives = 143/284 (50.35%), Query Frame = 1
Query:  133 LTTMLPCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLM-FYQIHDLGPNTRTPEESLQ--ESLEAY-PDLWIAGSVIPSLGEARGRVVL----------------ANNMPREEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIF--VYPLTVAAGLRTVFQGTNEVLFEFAEGF----LGIAMFDFIVEDAITHLVA 906
            + T  P WMS +    +L  +S+PGTHDTMS        GG    V TQ+  LRT L+AG+R LDIR RH+DD F + HG V     FD DV      FL E+PTE VLM   Q H+    TR+  E+     S  AY P LW  G+ +PSL + RGR+V+                 ++   + Q+ +++  +  +  K +  R  F+E    SA  M+ VN+ SGS     VYP TVA+G  +V++GTN+   E+         G+ M DF     I  ++A
Sbjct:   53 IETSHPDWMSWVPGQTNLAALSLPGTHDTMS------FHGGVL--VQTQSMPLRTQLEAGIRVLDIRCRHIDDRFTIHHGEVYQQANFD-DVLQATIQFLREHPTETVLMKVQQEHEAENTTRSFAETFAWYRSQSAYSPYLW-TGTYLPSLDQVRGRIVILQAFSGGSYGVRWPSDGSSASFDIQDEWEVTWVWNIPAKWEQARAQFMETNSGSASVMY-VNFLSGSSHTGGVYPYTVASGEGSVYRGTNDQALEYLVAGNVQRTGVVMMDFPGAGLIDAIIA 325          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: UPI001A106EBD (Phosphatidylinositol-specific phospholipase C n=1 Tax=Calothrix sp. C42_A2020_038 TaxID=2774333 RepID=UPI001A106EBD)

HSP 1 Score: 124 bits (311), Expect = 1.710e-29
Identity = 89/232 (38.36%), Postives = 129/232 (55.60%), Query Frame = 1
Query:  148 PCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKT---FLSENPTEVVLMFYQIHDLGP--NTRTPEESLQESLEAYPD-LWIAGSVIPSLGEARGRVVLANNMPR-----------EEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIFVYPLTVAAG 792
            P WM+ + D  +L+ +SIPGTHD+MS      L GG  + V TQ+ SL T L++G+R LDIR RH++DSF + HG+V     FD    DVLKT   FL+ NP+E VLM  +  +  P  NTR+ EE+ ++  E Y   +W   S  P LG+ RG++V+  +              + Q+NY+L+T   +  K   ++   +    AS  D F +NY SGSG   +P  VA+G
Sbjct:   48 PNWMAKIPDNRNLSSLSIPGTHDSMS------LHGG--DVVTTQSMSLATQLNSGIRVLDIRCRHINDSFAIHHGVVYQKANFD----DVLKTVADFLANNPSETVLMRVK-EEYKPQNNTRSFEETFKKYNEKYSKFIWAPTSQNPKLGDVRGKIVILQDFSASSQFGLQYNRFDSQDNYNLKTNWDLHQKWTYVKAH-INKANASNKDKFFINYLSGSG-GSFPYFVASG 264          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: UPI001CCE2E8E (phosphatidylinositol-specific phospholipase C n=1 Tax=Cystobacter gracilis TaxID=394092 RepID=UPI001CCE2E8E)

HSP 1 Score: 123 bits (308), Expect = 3.900e-28
Identity = 89/249 (35.74%), Postives = 135/249 (54.22%), Query Frame = 1
Query:  154 WMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLM-FYQIHDLGPNTRTPEESLQ--ESLEAYPDLWIAGSVIPSLGEARGRVVLA----------------NNMPREEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIF--VYPLTVAAGLRTVFQGTNEVLFEF 837
            WMS + +  +L  +SIPGTHDTMS        GGS   V TQ+  LRT LDAG+RALDIR RH+ D F + HG V     FD+ +R  ++ FL ++P+E VLM   + +D   NTR+ EE+    +S  AY +    G+ +P+L + RG++V+                 +N   + Q+ +++  L  +  K + I   F +    SA  M+ VN+ SGS     V+P TVA+G  +V++G N+   E+
Sbjct:   60 WMSWIPNATNLAALSIPGTHDTMS------FHGGSL--VQTQSLPLRTQLDAGIRALDIRCRHIGDRFAIHHGSVYQHANFDDVLRTTIQ-FLKDHPSETVLMKVKEEYDAEGNTRSFEETFAWYQSQTAYKNFIWTGTTLPTLEQVRGKIVIVQAFGGGSYGVRWPSDGSNASFDVQDEWEVTWLWDIPTKWERILAQFEKTKSGSASVMY-VNFLSGSSSTGGVHPYTVASGEGSVYRGMNDQALEY 298          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: A0A1D8TAE7_9NOCA (1-phosphatidylinositol phosphodiesterase n=2 Tax=Rhodococcus sp. WMMA185 TaxID=679318 RepID=A0A1D8TAE7_9NOCA)

HSP 1 Score: 119 bits (297), Expect = 1.170e-27
Identity = 105/287 (36.59%), Postives = 138/287 (48.08%), Query Frame = 1
Query:  148 PCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLMFYQI-HDLGPNTRTPEESLQESLEAYPD--------LWIAGS----VIPSLGEARGRVVLANNM-------PR-----EEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMF--RVNYFSGSGIF-----VYPLTVAAGLRTV---FQGTNEVLFEFAEGFLGIAMFDF----IVEDAI 891
            P WM  L D  + TE+S+PGTHDTM+   SA L G       TQ + L T L+AG+R LDIR RH  D F + HGI  L   F  DV   +  FL ENP+E V M  Q  +    NTR+ E++L   +   PD        LW   +     IP LGE RG+VV+  N        PR     + Q++Y L +LD +  K + +RD F +    S   MF   +N  SG  +      V P+TVA G R V      T + L +   G  GI   DF    +VE+ I
Sbjct:   40 PDWMGDLPDSANPTELSLPGTHDTMAY--SASLIGA------TQDFDLATQLNAGIRVLDIRTRHYQDEFPIHHGIEYLQADF-ADVVSTVSEFLRENPSETVFMRMQKEYKDAENTRSYEDTLNWYIHDNPDTRDLLSEYLWTPPADYDGAIPDLGEIRGQVVILQNFSADGVYGPRWGRNMDIQDDYLLPSLDDIDTKWEKVRDQFEKAEQGSMQTMFVNGLNATSGEDLGAIIDGVLPMTVAKGTRNVTGIVPRTEDYLRDSGTGRTGIVFADFPSAALVEEVI 317          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: UPI0013DD2904 (phosphatidylinositol-specific phospholipase C domain-containing protein n=1 Tax=Pyxidicoccus trucidator TaxID=2709662 RepID=UPI0013DD2904)

HSP 1 Score: 122 bits (306), Expect = 1.220e-27
Identity = 89/265 (33.58%), Postives = 137/265 (51.70%), Query Frame = 1
Query:  133 LTTMLPCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLMFYQIHDLGPN-TRTPEESLQ---ESLEAYPDLWIAGSVIPSLGEARGRVVLANNM----------PREEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIFVYPLTVAAGLRTVFQGTNEVLFEFAEGF----LGIAMFDF 873
            + T  P WM +  D  SL  +S+PGTHDTM+  ++    GG  +   TQ+ +LR  LDAG+RALDIR RH+ D+F + HG+V L   F  DV +    FLSE+P E ++M  +      N TRT  ++ +   E     P +W  GS +P+LGE RG++V+ ++             + Q+++ + TL  +  K + +R    +    S   +F VN+ SGS    +P  VA G  +  +G N+   ++  G      GI M DF
Sbjct:   42 IETSHPGWMGAFPDSTSLASVSLPGTHDTMAFTNT----GG--DLTQTQSLNLRAQLDAGIRALDIRCRHIGDAFTIHHGVVYLNVNFT-DVLNTATQFLSEHPRETLVMRVKKEHTEENITRTFAQTFEWYREQPAFKPYIW-RGSHVPTLGEVRGKLVILDDFGGGAYGIPWSSLDLQDDWTVSTLFDIDDKWNKVRAHLEKTNTGSPSKLF-VNFLSGSSAGAFPYMVAGGAGSGIRGVNDFAIDYLVGAKVQRAGIMMMDF 297          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: UPI0009E30A81 (phosphatidylinositol-specific phospholipase C n=1 Tax=Allosalinactinospora lopnorensis TaxID=1352348 RepID=UPI0009E30A81)

HSP 1 Score: 120 bits (301), Expect = 3.870e-27
Identity = 102/286 (35.66%), Postives = 137/286 (47.90%), Query Frame = 1
Query:  139 TMLPCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLM-FYQIHDLGPNTRTPEESLQESLEAYPD--------LWIAGSV---IPSLGEARGRVVLANNM--------PR------EEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIFVYPLTVAAG---LRTVFQGTNEVLFEFAEGFLGIAMFDF----IVEDAITH 897
            T  P WMS + D   L  +SIPGTHDTM++        G T   +TQ   L   L AG+RALDIR RH  D F + HG V L   F + +RD    FL E+PTE VLM   + +    NTR+  E+L+  L   PD        LW  G     IP+LGEARG++VL  +         PR      + Q+ Y + T+  +  K    R  F E  G+   +   VN+ SG+G+  YP  VA G   LR V     + LFE      G+ M D+    +V+  + H
Sbjct:   58 TSHPDWMSLVPDDTDLAALSIPGTHDTMAR--------GVTPAANTQDSGLPEQLGAGIRALDIRARHHRDVFPIHHGRVYLNANFTDVLRDTTD-FLKEHPTETVLMRLKEEYRAEENTRSFAETLEWYLNDNPDTADLAREHLWSPGGDGRRIPTLGEARGKIVLLQDFNGDGAVYGPRWGGPAMDIQDEYRVPTIFDIDDKWHKARAHF-EKTGSGDSEALSVNFLSGAGVGAYPKEVARGVLGLRGVNDFALQYLFERNVSRTGVVMMDYPGAGLVDAVVAH 333          
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Match: A0A0H4WXD2_9DELT (1-phosphatidylinositol phosphodiesterase n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WXD2_9DELT)

HSP 1 Score: 120 bits (301), Expect = 5.800e-27
Identity = 85/252 (33.73%), Postives = 130/252 (51.59%), Query Frame = 1
Query:  121 ESPPLTTMLPCWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTMLDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTEVVLMFYQIHDLGPNTRTPEESLQESLEAY-------PDLWIAGSVIPSLGEARGRVVLANNM----------PREEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFSGSGIFVYPLTVAAGLRTV-FQGTNE 822
            +S  + T  P WM+ + D   L+ +S+PGTHDTM+       QG   +   TQ+  LR  L+AGVRALDIR RH+ DSF + HG+V L   FD+ +R  ++ FL+ NP+E V+M  +      N      S  E+  AY       P +W  GS +PSLGE RG++V+ ++               Q+++ + TL  +  K + +R   LE     A     VN+ SG+    +P +VA G  ++  +G N+
Sbjct:   38 DSGSIETHHPNWMNWVPDSTRLSALSLPGTHDTMA------YQGYGGSLTQTQSLDLRKQLEAGVRALDIRCRHIADSFTIHHGVVYLHVNFDDVLRTTIQ-FLNANPSETVVMRVKKEHTEENVT---RSFAETYLAYRNNPAYRPYIW-TGSQVPSLGEVRGKIVILDDFGGGAYGIAWGSLNLQDDWTVSTLFDIGNKWNKVRAH-LERTNTGASSSLFVNFLSGASALAHPYSVAGGHSSMGIRGVND 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73318.15018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX88_ECTSI5.730e-13562.26PLCXc domain-containing protein n=2 Tax=Ectocarpus... [more]
UPI001F2D45DE1.480e-3035.29phosphatidylinositol-specific phospholipase C doma... [more]
A0A511T7G9_MYXFU1.060e-2935.661-phosphatidylinositol phosphodiesterase n=4 Tax=M... [more]
A0A085WNG0_9DELT1.150e-2935.921-phosphatidylinositol phosphodiesterase n=1 Tax=H... [more]
UPI001A106EBD1.710e-2938.36Phosphatidylinositol-specific phospholipase C n=1 ... [more]
UPI001CCE2E8E3.900e-2835.74phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A1D8TAE7_9NOCA1.170e-2736.591-phosphatidylinositol phosphodiesterase n=2 Tax=R... [more]
UPI0013DD29041.220e-2733.58phosphatidylinositol-specific phospholipase C doma... [more]
UPI0009E30A813.870e-2735.66phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A0H4WXD2_9DELT5.800e-2733.731-phosphatidylinositol phosphodiesterase n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73318contigH-elongata_contig73318:376..1684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score133.3
Seed ortholog evalue2e-28
Seed eggNOG ortholog215803.DB30_1575
KEGG rclassRC00017,RC00425
KEGG koko:K01771
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
EggNOG free text desc.Phospholipase C, catalytic domain (part); domain X
EggNOG OGs1N0QX@1224,2X4XX@28221,2YZTE@29,439M2@68525,COG0823@1,COG0823@2
EC4.6.1.13
COG Functional cat.U
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size912
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.200608-CDS-H-elongata_contig73318:375..10081622931136.200608-CDS-H-elongata_contig73318:375..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73318 376..1008 -
1691679713.3854117-CDS-H-elongata_contig73318:375..10081691679713.3854117-CDS-H-elongata_contig73318:375..1008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73318 376..1008 -
1622931136.2174766-CDS-H-elongata_contig73318:1405..16841622931136.2174766-CDS-H-elongata_contig73318:1405..1684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73318 1406..1684 -
1691679713.4036245-CDS-H-elongata_contig73318:1405..16841691679713.4036245-CDS-H-elongata_contig73318:1405..1684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73318 1406..1684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73318.15018.1prot_H-elongata_contig73318.15018.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73318 376..1684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73318.15018.1

>prot_H-elongata_contig73318.15018.1 ID=prot_H-elongata_contig73318.15018.1|Name=mRNA_H-elongata_contig73318.15018.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp
CGTTGGCATTETCNDEDYAGGCDTPLQYVCEHQLPGLNVCESPPLTTMLP
CWMSSLSDGLSLTEISIPGTHDTMSKGSSACLQGGSTNYVHTQAWSLRTM
LDAGVRALDIRLRHVDDSFILEHGIVELPYAFDEDVRDVLKTFLSENPTE
VVLMFYQIHDLGPNTRTPEESLQESLEAYPDLWIAGSVIPSLGEARGRVV
LANNMPREEQNNYDLETLDGVSYKKDLIRDFFLEGGGASAGDMFRVNYFS
GSGIFVYPLTVAAGLRTVFQGTNEVLFEFAEGFLGIAMFDFIVEDAITHL
VAQQ
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mRNA from alignment at H-elongata_contig73318:376..1684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73318.15018.1 ID=mRNA_H-elongata_contig73318.15018.1|Name=mRNA_H-elongata_contig73318.15018.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1309bp|location=Sequence derived from alignment at H-elongata_contig73318:376..1684- (Himanthalia elongata Himel1 dioecious)
TGTGGGACTACGGGGGGCTGCGCGACGACGGAAACGTGCAATGATGAAGA CTACGCGGGAGGCTGTGACACCCCGCTCCAGTACGTCTGCGAGCATCAGC TGCCAGGGCTGAACGTGTGCGAGTCCCCACCCCTGACGACCATGCTACCG TGCTGGATGTCGTCTCTCTCCGACGGTCTGTCTCTGACCGAGATCAGCAT CCCCGGGACGCACGACACGATGTCGAAGGGGTCCTCGGCCTGCCTCCAGG GCGGAAGCACGAATTACGTCCACACTCAGGTAGGTGTCGTGCGAAGTTGA AGGGCGCCTTACAGCCTACCGTGCCCTTGCGGCGACTTATTGTTATTATG ATTGTTGGCAGCATATCCGGAGGGGTGGCGCGTACGCGGCCGCGGCCACG TCCCCGTAAAATGACGCCACCACCCTTATACGCGGAGACATTGCTACACC CTGCTGCGTGGCGTTATCATGGCGCTGTTCTTTTCCTACACCTCTAGTCA TGTTCTAAGACAACCGAGTCAATTTTGTTTTTTCAAGTGAGCAGGGAATA ATGAAAAACAAATTAAACAAACTAAACGTGTCGCTCTCTCCATCACACAC ACACACACACACACACACACATACATACATACATACTCACACACTCTAAT CGGAGTTCCACCACGGCGCTTTGCAGGCATGGTCCCTCCGGACGATGTTG GACGCCGGGGTGCGAGCGCTCGACATCCGGCTCCGACATGTTGACGACTC TTTCATCCTCGAGCACGGCATCGTAGAGCTGCCATACGCCTTTGACGAGG ACGTGCGAGATGTCCTAAAGACCTTCCTCTCGGAGAACCCGACAGAAGTC GTTCTCATGTTCTACCAGATCCACGACCTCGGGCCGAACACACGGACGCC TGAAGAAAGTCTCCAGGAATCTCTGGAGGCGTACCCCGACCTCTGGATTG CGGGTTCCGTGATTCCCTCACTCGGCGAGGCCCGGGGCAGGGTGGTCCTG GCCAACAACATGCCGCGTGAAGAGCAGAATAACTACGACCTGGAGACGCT TGACGGAGTCTCCTACAAGAAAGACCTAATCCGCGATTTTTTTCTCGAGG GCGGCGGTGCATCAGCGGGGGATATGTTCCGCGTTAACTACTTTTCCGGT TCGGGAATATTCGTCTACCCCCTAACGGTCGCGGCCGGTCTGAGGACGGT GTTCCAGGGGACCAATGAGGTCCTCTTTGAGTTCGCCGAAGGATTTCTCG GCATCGCGATGTTCGATTTCATCGTGGAGGATGCTATCACGCACCTCGTC GCCCAACAG
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Coding sequence (CDS) from alignment at H-elongata_contig73318:376..1684-

>mRNA_H-elongata_contig73318.15018.1 ID=mRNA_H-elongata_contig73318.15018.1|Name=mRNA_H-elongata_contig73318.15018.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at H-elongata_contig73318:376..1684- (Himanthalia elongata Himel1 dioecious)
TGTGGGACTACGGGGGGCTGCGCGACGACGGAAACGTGCAATGATGAAGA
CTACGCGGGAGGCTGTGACACCCCGCTCCAGTACGTCTGCGAGCATCAGC
TGCCAGGGCTGAACGTGTGCGAGTCCCCACCCCTGACGACCATGCTACCG
TGCTGGATGTCGTCTCTCTCCGACGGTCTGTCTCTGACCGAGATCAGCAT
CCCCGGGACGCACGACACGATGTCGAAGGGGTCCTCGGCCTGCCTCCAGG
GCGGAAGCACGAATTACGTCCACACTCAGTGTGGGACTACGGGGGGCTGC
GCGACGACGGAAACGTGCAATGATGAAGACTACGCGGGAGGCTGTGACAC
CCCGCTCCAGTACGTCTGCGAGCATCAGCTGCCAGGGCTGAACGTGTGCG
AGTCCCCACCCCTGACGACCATGCTACCGTGCTGGATGTCGTCTCTCTCC
GACGGTCTGTCTCTGACCGAGATCAGCATCCCCGGGACGCACGACACGAT
GTCGAAGGGGTCCTCGGCCTGCCTCCAGGGCGGAAGCACGAATTACGTCC
ACACTCAGGCATGGTCCCTCCGGACGATGTTGGACGCCGGGGTGCGAGCG
CTCGACATCCGGCTCCGACATGTTGACGACTCTTTCATCCTCGAGCACGG
CATCGTAGAGCTGCCATACGCCTTTGACGAGGACGTGCGAGATGTCCTAA
AGACCTTCCTCTCGGAGAACCCGACAGAAGTCGTTCTCATGTTCTACCAG
ATCCACGACCTCGGGCCGAACACACGGACGCCTGAAGAAAGTCTCCAGGA
ATCTCTGGAGGCGTACCCCGACCTCTGGATTGCGGGTTCCGTGATTCCCT
CACTCGGCGAGGCCCGGGGCAGGGTGGTCCTGGCCAACAACATGCCGCGT
GAAGAGCAGAATAACTACGACCTGGAGACGCTTGACGGAGTCTCCTACAA
GAAAGACCTAATCCGCGATTTTTTTCTCGAGGGCGGCGGTGCATCAGCGG
GGGATATGTTCCGCGTTAACTACTTTTCCGGTTCGGGAATATTCGTCTAC
CCCCTAACGGTCGCGGCCGGTCTGAGGACGGTGTTCCAGGGGACCAATGA
GGTCCTCTTTGAGTTCGCCGAAGGATTTCTCGGCATCGCGATGTTCGATT
TCATCGTGGAGGATGCTATCACGCACCTCGTCGCCCAACAGGCATGGTCC
CTCCGGACGATGTTGGACGCCGGGGTGCGAGCGCTCGACATCCGGCTCCG
ACATGTTGACGACTCTTTCATCCTCGAGCACGGCATCGTAGAGCTGCCAT
ACGCCTTTGACGAGGACGTGCGAGATGTCCTAAAGACCTTCCTCTCGGAG
AACCCGACAGAAGTCGTTCTCATGTTCTACCAGATCCACGACCTCGGGCC
GAACACACGGACGCCTGAAGAAAGTCTCCAGGAATCTCTGGAGGCGTACC
CCGACCTCTGGATTGCGGGTTCCGTGATTCCCTCACTCGGCGAGGCCCGG
GGCAGGGTGGTCCTGGCCAACAACATGCCGCGTGAAGAGCAGAATAACTA
CGACCTGGAGACGCTTGACGGAGTCTCCTACAAGAAAGACCTAATCCGCG
ATTTTTTTCTCGAGGGCGGCGGTGCATCAGCGGGGGATATGTTCCGCGTT
AACTACTTTTCCGGTTCGGGAATATTCGTCTACCCCCTAACGGTCGCGGC
CGGTCTGAGGACGGTGTTCCAGGGGACCAATGAGGTCCTCTTTGAGTTCG
CCGAAGGATTTCTCGGCATCGCGATGTTCGATTTCATCGTGGAGGATGCT
ATCACGCACCTCGTCGCCCAACAG
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