mRNA_H-elongata_contig73303.15014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73303.15014.1
Unique NamemRNA_H-elongata_contig73303.15014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73303.15014.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.150e-30
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    7 VRKPAEQLLKACEEVPGYISILASIVGAREAAPDARAAAVILLKNMVRVRWKSRGGRGFVIGAGEKAALRGFLLGA-MDEPEERVASQV 270
            VRKPAEQLLKACEE+PGY S+LA+I     A  DARA AVILLKNMVRVRW+SRGGRG V+G GEKAALR  L GA M+EPEERV SQ+
Sbjct:   33 VRKPAEQLLKACEELPGYTSVLAAIATTHAAPTDARATAVILLKNMVRVRWRSRGGRGAVVGDGEKAALREVLAGAGMEEPEERVVSQL 121
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BLAST of mRNA_H-elongata_contig73303.15014.1 vs. uniprot
Match: A0A6H5L766_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L766_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 7.270e-30
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:    7 VRKPAEQLLKACEEVPGYISILASIVGAREAAPDARAAAVILLKNMVRVRWKSRGGRGFVIGAGEKAALRGFLLGA-MDEPEERVASQV 270
            VRKPAEQLLKACEE+PGY S+LA+I     A  DARA AVILLKNMVRVRW+SRGGRG V+G  EKAALR  L GA M+EPEERV SQ+
Sbjct:   33 VRKPAEQLLKACEELPGYTSVLAAIATTHAAPTDARATAVILLKNMVRVRWRSRGGRGAVVGDREKAALREVLAGAGMEEPEERVVSQL 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73303.15014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G019_ECTSI3.150e-3074.16Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L766_9PHAE7.270e-3073.03Importin N-terminal domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73303contigH-elongata_contig73303:969..1250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.4e-25
Seed eggNOG ortholog2880.D7G019
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5657@1,KOG1993@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.7682736-CDS-H-elongata_contig73303:968..12501622931135.7682736-CDS-H-elongata_contig73303:968..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73303 969..1250 -
1691679713.1857018-CDS-H-elongata_contig73303:968..12501691679713.1857018-CDS-H-elongata_contig73303:968..1250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73303 969..1250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73303.15014.1prot_H-elongata_contig73303.15014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73303 969..1250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73303.15014.1

>prot_H-elongata_contig73303.15014.1 ID=prot_H-elongata_contig73303.15014.1|Name=mRNA_H-elongata_contig73303.15014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
EHVRKPAEQLLKACEEVPGYISILASIVGAREAAPDARAAAVILLKNMVR
VRWKSRGGRGFVIGAGEKAALRGFLLGAMDEPEERVASQVRLSV
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mRNA from alignment at H-elongata_contig73303:969..1250-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73303.15014.1 ID=mRNA_H-elongata_contig73303.15014.1|Name=mRNA_H-elongata_contig73303.15014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig73303:969..1250- (Himanthalia elongata Himel1 dioecious)
GAACACGTTCGCAAGCCCGCGGAGCAACTGCTGAAGGCGTGCGAGGAGGT
CCCCGGCTATATTTCGATCCTGGCGTCCATTGTGGGTGCTCGGGAAGCTG
CCCCCGACGCTAGAGCAGCGGCCGTGATCCTTCTCAAAAATATGGTCCGG
GTCCGGTGGAAGTCTAGGGGCGGGAGAGGCTTCGTCATCGGGGCAGGGGA
GAAGGCCGCCCTTCGAGGCTTTCTCCTGGGAGCCATGGACGAGCCAGAAG
AGAGAGTGGCTTCCCAGGTGAGGCTGTCAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig73303:969..1250-

>mRNA_H-elongata_contig73303.15014.1 ID=mRNA_H-elongata_contig73303.15014.1|Name=mRNA_H-elongata_contig73303.15014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig73303:969..1250- (Himanthalia elongata Himel1 dioecious)
GAACACGTTCGCAAGCCCGCGGAGCAACTGCTGAAGGCGTGCGAGGAGGT
CCCCGGCTATATTTCGATCCTGGCGTCCATTGTGGGTGCTCGGGAAGCTG
CCCCCGACGCTAGAGCAGCGGCCGTGATCCTTCTCAAAAATATGGTCCGG
GTCCGGTGGAAGTCTAGGGGCGGGAGAGGCTTCGTCATCGGGGCAGGGGA
GAAGGCCGCCCTTCGAGGCTTTCTCCTGGGAGCCATGGACGAGCCAGAAG
AGAGAGTGGCTTCCCAGGTGAGGCTGTCAGTCGAACACGTTCGCAAGCCC
GCGGAGCAACTGCTGAAGGCGTGCGAGGAGGTCCCCGGCTATATTTCGAT
CCTGGCGTCCATTGTGGGTGCTCGGGAAGCTGCCCCCGACGCTAGAGCAG
CGGCCGTGATCCTTCTCAAAAATATGGTCCGGGTCCGGTGGAAGTCTAGG
GGCGGGAGAGGCTTCGTCATCGGGGCAGGGGAGAAGGCCGCCCTTCGAGG
CTTTCTCCTGGGAGCCATGGACGAGCCAGAAGAGAGAGTGGCTTCCCAGG
TGAGGCTGTCAGTC
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