mRNA_H-elongata_contig733.15012.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig733.15012.1
Unique NamemRNA_H-elongata_contig733.15012.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig733.15012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig733contigH-elongata_contig733:9485..10069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size570
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig733.15012.1prot_H-elongata_contig733.15012.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig733 9620..10066 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.3377879-UTR-H-elongata_contig733:9484..96191622931135.3377879-UTR-H-elongata_contig733:9484..9619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig733 9485..9619 -
1691679712.929543-UTR-H-elongata_contig733:9484..96191691679712.929543-UTR-H-elongata_contig733:9484..9619Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig733 9485..9619 -
1622931135.4009018-UTR-H-elongata_contig733:10066..100691622931135.4009018-UTR-H-elongata_contig733:10066..10069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig733 10067..10069 -
1691679712.957828-UTR-H-elongata_contig733:10066..100691691679712.957828-UTR-H-elongata_contig733:10066..10069Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig733 10067..10069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931135.3686604-CDS-H-elongata_contig733:9619..96631622931135.3686604-CDS-H-elongata_contig733:9619..9663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 9620..9663 -
1691679712.9386523-CDS-H-elongata_contig733:9619..96631691679712.9386523-CDS-H-elongata_contig733:9619..9663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 9620..9663 -
1622931135.3868852-CDS-H-elongata_contig733:9678..100661622931135.3868852-CDS-H-elongata_contig733:9678..10066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 9679..10066 -
1691679712.947601-CDS-H-elongata_contig733:9678..100661691679712.947601-CDS-H-elongata_contig733:9678..10066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig733 9679..10066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig733.15012.1

>prot_H-elongata_contig733.15012.1 ID=prot_H-elongata_contig733.15012.1|Name=mRNA_H-elongata_contig733.15012.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MVDAGFRVRVGAGDRGGMVGGGVNVTLGGGITGGDVDVFEEDGEIVGVVF
GPGVSAGFGMSVGGGIGDVRGVVEVDVGVCVGVGVSGCGGIVGDCPGVGC
GVKGGNEAGFKAADEVVGVVVGPGVWFMVGGIADVDGMLEVGV*
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mRNA from alignment at H-elongata_contig733:9485..10069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig733.15012.1 ID=mRNA_H-elongata_contig733.15012.1|Name=mRNA_H-elongata_contig733.15012.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=585bp|location=Sequence derived from alignment at H-elongata_contig733:9485..10069- (Himanthalia elongata Himel1 dioecious)
GGTATGGTCGATGCTGGGTTTCGTGTTCGTGTCGGAGCGGGAGACCGTGG
AGGTATGGTAGGTGGTGGTGTCAATGTCACGCTTGGCGGTGGTATCACGG
GGGGAGATGTAGACGTGTTTGAAGAAGATGGTGAGATAGTCGGGGTGGTT
TTTGGTCCCGGTGTTTCGGCCGGTTTCGGTATGAGCGTCGGAGGAGGGAT
TGGGGATGTTCGTGGTGTAGTTGAGGTAGATGTTGGAGTTTGCGTTGGAG
TCGGAGTCAGTGGTTGTGGGGGTATTGTCGGTGATTGTCCTGGAGTTGGT
TGCGGTGTCAAGGGTGGAAATGAAGCCGGGTTCAAAGCCGCTGACGAGGT
CGTCGGGGTTGTTGTTGGACCTGGTGTTTGGTTCATGGTCGGTATGGACG
TCGGAGGTGGAATTGCAGATGTTGATGGTATGTTGGAAGTCGGTGTTTGA
GTTCGCGTCGGAGCAGGAGCTTCTGGTACTATCGTAGGTAGTGGAGTCGG
TTTTACATCAGGTTGCGGTGTCACGGGACCAGCCGTAGCCGGGCTAGGAA
AATGTGTTGGGGCAGTCGGTGCTTTTATTCGTTCT
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Coding sequence (CDS) from alignment at H-elongata_contig733:9485..10069-

>mRNA_H-elongata_contig733.15012.1 ID=mRNA_H-elongata_contig733.15012.1|Name=mRNA_H-elongata_contig733.15012.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig733:9485..10069- (Himanthalia elongata Himel1 dioecious)
ATGGTCGATGCTGGGTTTCGTGTTCGTGTCGGAGCGGGAGACCGTGGAGG
TATGGTAGGTGGTGGTGTCAATGTCACGCTTGGCGGTGGTATCACGGGGG
GAGATGTAGACGTGTTTGAAGAAGATGGTGAGATAGTCGGGGTGGTTTTT
GGTCCCGGTGTTTCGGCCGGTTTCGGTATGAGCGTCGGAGGAGGGATTGG
GGATGTTCGTGGTGTAGTTGAGGTAGATGTTGGAGTTTGCGTTGGAGTCG
GAGTCAGTGGTTGTGGGGGTATTGTCGGTGATTGTCCTGGAGTTGGTTGC
GGTGTCAAGGGTGGAAATGAAGCCGGGTTCAAAGCCGCTGACGAGGTCGT
CGGGGTTGTTGTTGGACCTGGTGTTTGGTTCATGGTCGATGGTCGATGCT
GGGTTTCGTGTTCGTGTCGGAGCGGGAGACCGTGGAGGTATGGTAGGTGG
TGGTGTCAATGTCACGCTTGGCGGTGGTATCACGGGGGGAGATGTAGACG
TGTTTGAAGAAGATGGTGAGATAGTCGGGGTGGTTTTTGGTCCCGGTGTT
TCGGCCGGTTTCGGTATGAGCGTCGGAGGAGGGATTGGGGATGTTCGTGG
TGTAGTTGAGGTAGATGTTGGAGTTTGCGTTGGAGTCGGAGTCAGTGGTT
GTGGGGGTATTGTCGGTGATTGTCCTGGAGTTGGTTGCGGTGTCAAGGGT
GGAAATGAAGCCGGGTTCAAAGCCGCTGACGAGGTCGTCGGGGTTGTTGT
TGGACCTGGTGTTTGGTTCATGGTCGGTGGAATTGCAGATGTTGATGGTA
TGTTGGAAGTCGGTGTTTGAGTGGAATTGCAGATGTTGATGGTATGTTGG
AAGTCGGTGTTTGA
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