mRNA_H-elongata_contig7328.15008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7328.15008.1
Unique NamemRNA_H-elongata_contig7328.15008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: D8LD03_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD03_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 1.000e-78
Identity = 140/185 (75.68%), Postives = 158/185 (85.41%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQALRGARAPERT 555
            +AIAKESGATFINVRMGAV QK+VGEGEK+V+AIFSLA+KLAPSIIFIDEIDCF+R R   E DHV+R+KTEFMTLWDGLLT R+ PV+VLGTTNRP ++DPAILRRLPRQF+V LP T+ QREQIL+LI  +YRL+  VDL  VA QT GFSGSDLD L QAAQTVPAREFA+ALR     ERT
Sbjct:  190 RAIAKESGATFINVRMGAVQQKWVGEGEKMVSAIFSLANKLAPSIIFIDEIDCFMRTRNVLEQDHVVRVKTEFMTLWDGLLTERSRPVMVLGTTNRPLEIDPAILRRLPRQFVVGLPETADQREQILQLIARRYRLSDGVDLGWVAAQTEGFSGSDLDALFQAAQTVPAREFARALRENAREERT 374
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BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: S2J2E0_MUCC1 (AAA domain-containing protein n=8 Tax=Mucorineae TaxID=1344963 RepID=S2J2E0_MUCC1)

HSP 1 Score: 188 bits (477), Expect = 2.360e-49
Identity = 95/183 (51.91%), Postives = 128/183 (69.95%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQALRGARAPE 549
            KA+AKESGATFIN+ +  +T KY GE  K+V+A+F+LA KL PSI+FIDEID FLR R   +H+    +K EFM+LWDGL T   S +++LG TNRP D+D AILRR+P++F V LP+ S QR+ IL L+     LAS  +++ +  +TAG SGSDL  LC+ A  +P REF +++R A   E
Sbjct:  143 KALAKESGATFINIHVSTLTDKYYGESNKLVSAVFTLARKLQPSIVFIDEIDSFLRERRSTDHETTGMMKAEFMSLWDGLTTGEDSRIVILGATNRPNDIDSAILRRMPKRFSVRLPSES-QRKSILELLLRNIELASDFNMTELVQRTAGLSGSDLKELCRNAAMIPIREFVRSVRPASTSE 324
[Close]
BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: I1BJZ1_RHIO9 (AAA domain-containing protein n=2 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BJZ1_RHIO9)

HSP 1 Score: 183 bits (464), Expect = 1.340e-47
Identity = 91/176 (51.70%), Postives = 125/176 (71.02%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQAL 528
            KA+AKESGATFINV +  +T KY GE  K+V+A+F+LA KL PSI+FIDEID FLR R   +H+    +K EFM+LWDGL T     +++LG TNRP D+D AILRR+P++F V LP+ S QR+ IL L+    +LAS  +++ +  +TAG SGSDL  LC+ A  +P RE+ +++
Sbjct:  141 KALAKESGATFINVHVSTLTDKYYGESNKLVSAVFTLARKLQPSIVFIDEIDSFLRERRSTDHETTGMMKAEFMSLWDGLTTGEEGRIVILGATNRPNDIDSAILRRMPKRFSVRLPSES-QRKSILELLLKDIQLASDFNMNELVQRTAGLSGSDLKELCRNAAMIPVREYVRSV 315
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BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: A0A167PLW3_PHYB8 (AAA domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167PLW3_PHYB8)

HSP 1 Score: 181 bits (460), Expect = 3.520e-47
Identity = 91/175 (52.00%), Postives = 122/175 (69.71%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQA 525
            KA+AKESGATFIN+ +  +T KY GE  K+VAA+FSLA KL PSI+FIDEID FLR R   +H+    +K EFM+LWDGL T   S +++LG TNRP D+D AILRR+P++F V LP T +QR+ IL L+     LA    ++ +  +TAG SGSDL  +C+ A  +P RE+ ++
Sbjct:  145 KALAKESGATFINIHVSTLTDKYYGESNKLVAAVFSLARKLQPSIVFIDEIDSFLRERRSNDHETTGMMKAEFMSLWDGLTTGEDSRIVILGATNRPNDIDSAILRRMPKRFAVRLP-TESQRKSILELLLRDINLAPDFKMAELVQRTAGCSGSDLKEVCRNAAMIPIREYVRS 318
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BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: A0A1Y3MKK2_PIRSE (AAA domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MKK2_PIRSE)

HSP 1 Score: 177 bits (449), Expect = 1.020e-46
Identity = 88/176 (50.00%), Postives = 126/176 (71.59%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQAL 528
            KAIAKESGA FIN+ +  +T KY GE +K+V A+FSLAHKL P+IIFIDEID FLR+R   +H+    +K EFM+LWDGL++  +S +I+LG TNRP D+D AI+RR+P+++ V LP  S QR  +L+L+    +L   + L  +A +T  +SGSD+  LC+AA  +P RE+ +++
Sbjct:   53 KAIAKESGANFINLHISTLTDKYYGESQKLVNALFSLAHKLEPTIIFIDEIDSFLRDRRSQDHEATAMMKAEFMSLWDGLVSDSSSRIIILGATNRPNDIDQAIIRRMPKRYSVQLPNLS-QRVTLLKLMLKDAKLDENLKLEEIAKRTNHYSGSDIKELCRAAVMIPVREYIRSI 227
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BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: A0A367JRE4_RHIAZ (AAA domain-containing protein n=4 Tax=Rhizopus TaxID=4842 RepID=A0A367JRE4_RHIAZ)

HSP 1 Score: 180 bits (456), Expect = 1.740e-46
Identity = 89/176 (50.57%), Postives = 122/176 (69.32%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQAL 528
            KA+A+ESGATFINV +  +T KY GE  K+ AA+F+LA KL PSI+FIDEID FLR R   +H+    +K EFM+LWDGL T   + +++LG TNRP D+D AILRR+P++F V LP+   QR  IL L+     LAS  +++ +  +TAG SGSDL  LC+ A  +P RE+ +++
Sbjct:  141 KALARESGATFINVHVSTLTDKYYGESNKLAAAVFTLARKLQPSIVFIDEIDSFLRERRSTDHETTGMMKAEFMSLWDGLTTGEDTRIVILGATNRPNDIDSAILRRMPKRFAVRLPSAD-QRRSILELLLKNITLASDFNMNELVQRTAGLSGSDLKELCRNAAMIPIREYVRSV 315
[Close]
BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: A0A4P9Y8U9_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y8U9_9FUNG)

HSP 1 Score: 180 bits (456), Expect = 1.740e-46
Identity = 90/176 (51.14%), Postives = 125/176 (71.02%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQAL 528
            KA+AKESGATFIN+R+  +T K+ GE  K++ A+F LA KL PSIIFIDEID FLR R   +H+ +  +K EFMTLWDGL++ + S +I+LG TNRP+D+D AILRR+P++F ++ P +  QRE ILR+I     L   + +SR+   T GFSGSDL  +C+ A  +P RE+  ++
Sbjct:  177 KALAKESGATFINLRLSTLTNKWFGESNKLIMALFGLARKLQPSIIFIDEIDSFLRERRSTDHEAMGMMKAEFMTLWDGLVSGKDSRIIILGATNRPSDIDQAILRRMPKRFQIS-PPSPEQRESILRIILRDASLHPDLTISRLVSITEGFSGSDLKEMCRHAVMIPRREYIHSI 351
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BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: A0A2N1J9Y2_9BASI (AAA domain-containing protein n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1J9Y2_9BASI)

HSP 1 Score: 179 bits (455), Expect = 2.270e-46
Identity = 99/190 (52.11%), Postives = 129/190 (67.89%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQALRGARAPERTTRSRR 570
            KA+AKESGATFIN+ +  +T K+ GE  K+VAA+F LA KL PSIIFIDEID FLR R   +H+    +K EFMTLWDGL T  T  ++VLG TNRP D+D AILRR+P+++ V LP  SAQR++IL ++ +      + DL ++  +T G+SGSDL  LC+AA  VP RE    LR     ER  R+R+
Sbjct:  139 KALAKESGATFINMHVSTLTNKWFGESNKLVAALFGLARKLQPSIIFIDEIDSFLRERASGDHEVTAMMKAEFMTLWDGL-TSSTDRILVLGATNRPNDIDAAILRRMPKRYAVRLPE-SAQRKKILAIMLSNVPCHPSFDLEQLVRKTDGYSGSDLRELCRAAAMVPVREV---LRSRTGRERVARARK 323
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BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: A0A1X2HK30_SYNRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HK30_SYNRA)

HSP 1 Score: 179 bits (455), Expect = 2.560e-46
Identity = 91/176 (51.70%), Postives = 123/176 (69.89%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQAL 528
            KA+AKES ATFIN+ +  +T KY GE  K+VAA+FSLA KL P+I+FIDEID FLR R   +H+    +K EFM+LWDGL T   S ++VLG TNRP D+D AILRR+P++F V LP+   QR  IL+L+    +LA   ++S +  +TAG SGSDL  LC+ A  +P RE+ +++
Sbjct:  143 KALAKESNATFINLHVSTLTDKYYGESNKLVAALFSLARKLQPAIVFIDEIDSFLRERRSTDHETTGMMKAEFMSLWDGLTTGEDSRIVVLGATNRPNDIDSAILRRMPKRFAVRLPSEE-QRRSILQLLLKDIKLAPDFNMSELVQRTAGCSGSDLKELCRNAAMIPIREYVRSV 317
[Close]
BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Match: A0A3G2S8X5_9BASI (Putative AAA domain-containing protein C24B10.10c n=1 Tax=Malassezia restricta CBS 7877 TaxID=425264 RepID=A0A3G2S8X5_9BASI)

HSP 1 Score: 179 bits (455), Expect = 2.630e-46
Identity = 93/178 (52.25%), Postives = 124/178 (69.66%), Query Frame = 1 
Query:    1 KAIAKESGATFINVRMGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDHVLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVALPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQTVPAREFAQALRG 534
            KA+AKESGATFIN+ +  +T K+ GE  K+VAA+F LA KL P+I+FIDEID FLR R+  +H+ +  +K EFMTLWDGL T  T  ++VLG TNRPAD+D AILRRLP+++ V LP  S QR++IL ++      AS  D+  +  +T  +SGSDL  LC+AA  VP RE  ++  G
Sbjct:  148 KALAKESGATFINMHVSTLTNKWFGESNKLVAALFGLARKLQPTIVFIDEIDSFLRERSSGDHEAMAMMKAEFMTLWDGL-TSSTDRILVLGATNRPADIDSAILRRLPKRYAVGLPEAS-QRKKILSIMLADVPCASNFDIDEIVRKTETYSGSDLKELCRAAAMVPVREVLRSREG 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7328.15008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD03_ECTSI1.000e-7875.68AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
S2J2E0_MUCC12.360e-4951.91AAA domain-containing protein n=8 Tax=Mucorineae T... [more]
I1BJZ1_RHIO91.340e-4751.70AAA domain-containing protein n=2 Tax=Rhizopus del... [more]
A0A167PLW3_PHYB83.520e-4752.00AAA domain-containing protein n=1 Tax=Phycomyces b... [more]
A0A1Y3MKK2_PIRSE1.020e-4650.00AAA domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A367JRE4_RHIAZ1.740e-4650.57AAA domain-containing protein n=4 Tax=Rhizopus Tax... [more]
A0A4P9Y8U9_9FUNG1.740e-4651.14P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2N1J9Y2_9BASI2.270e-4652.11AAA domain-containing protein n=1 Tax=Malassezia v... [more]
A0A1X2HK30_SYNRA2.560e-4651.70P-loop containing nucleoside triphosphate hydrolas... [more]
A0A3G2S8X5_9BASI2.630e-4652.25Putative AAA domain-containing protein C24B10.10c ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7328contigH-elongata_contig7328:139..5147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue6.9e-63
Seed eggNOG ortholog2880.D8LD03
Preferred nameATAD1
KEGG rclassRC00002
KEGG koko:K01509
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
GOsGO:0000003,GO:0000166,GO:0002090,GO:0002092,GO:0003002,GO:0003006,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005777,GO:0005778,GO:0005886,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0008104,GO:0008144,GO:0008150,GO:0009888,GO:0009893,GO:0009953,GO:0009987,GO:0010604,GO:0010646,GO:0010648,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019222,GO:0019867,GO:0019953,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030100,GO:0030154,GO:0030554,GO:0031090,GO:0031323,GO:0031325,GO:0031903,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0033036,GO:0033365,GO:0034613,GO:0035220,GO:0035222,GO:0035295,GO:0035639,GO:0036094,GO:0042579,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0044703,GO:0044743,GO:0045041,GO:0045184,GO:0045202,GO:0045211,GO:0045807,GO:0046907,GO:0048190,GO:0048232,GO:0048259,GO:0048260,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050804,GO:0050805,GO:0050877,GO:0050890,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051966,GO:0051967,GO:0055085,GO:0060255,GO:0060429,GO:0060627,GO:0065002,GO:0065007,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0097060,GO:0097159,GO:0097367,GO:0098588,GO:0098590,GO:0098794,GO:0098805,GO:0099177,GO:1901265,GO:1901363,GO:1990542
EggNOG free text desc.ATP binding
EggNOG OGsCOG0464@1,KOG0737@2759
EC3.6.1.3
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-01_001750.1
Exons5
Model size2386
Cds size879
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.9460232-UTR-H-elongata_contig7328:138..1831622931134.9460232-UTR-H-elongata_contig7328:138..183Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7328 139..183 +
1691679712.7040563-UTR-H-elongata_contig7328:138..1831691679712.7040563-UTR-H-elongata_contig7328:138..183Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7328 139..183 +
1622931135.0271802-UTR-H-elongata_contig7328:3685..51471622931135.0271802-UTR-H-elongata_contig7328:3685..5147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7328 3686..5147 +
1691679712.7691653-UTR-H-elongata_contig7328:3685..51471691679712.7691653-UTR-H-elongata_contig7328:3685..5147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7328 3686..5147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.961083-CDS-H-elongata_contig7328:183..2451622931134.961083-CDS-H-elongata_contig7328:183..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 184..245 +
1691679712.7207086-CDS-H-elongata_contig7328:183..2451691679712.7207086-CDS-H-elongata_contig7328:183..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 184..245 +
1622931134.9724002-CDS-H-elongata_contig7328:871..10111622931134.9724002-CDS-H-elongata_contig7328:871..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 872..1011 +
1691679712.730009-CDS-H-elongata_contig7328:871..10111691679712.730009-CDS-H-elongata_contig7328:871..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 872..1011 +
1622931134.9838812-CDS-H-elongata_contig7328:1391..15961622931134.9838812-CDS-H-elongata_contig7328:1391..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 1392..1596 +
1691679712.7426548-CDS-H-elongata_contig7328:1391..15961691679712.7426548-CDS-H-elongata_contig7328:1391..1596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 1392..1596 +
1622931134.998809-CDS-H-elongata_contig7328:2834..32441622931134.998809-CDS-H-elongata_contig7328:2834..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 2835..3244 +
1691679712.7530742-CDS-H-elongata_contig7328:2834..32441691679712.7530742-CDS-H-elongata_contig7328:2834..3244Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 2835..3244 +
1622931135.0122218-CDS-H-elongata_contig7328:3623..36851622931135.0122218-CDS-H-elongata_contig7328:3623..3685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 3624..3685 +
1691679712.7613087-CDS-H-elongata_contig7328:3623..36851691679712.7613087-CDS-H-elongata_contig7328:3623..3685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7328 3624..3685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7328.15008.1prot_H-elongata_contig7328.15008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7328 184..3685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7328.15008.1

>prot_H-elongata_contig7328.15008.1 ID=prot_H-elongata_contig7328.15008.1|Name=mRNA_H-elongata_contig7328.15008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MGAVTQKYVGEGEKIVAAIFSLAHKLAPSIIFIDEIDCFLRNRTGFEHDH
VLRIKTEFMTLWDGLLTVRTSPVIVLGTTNRPADVDPAILRRLPRQFIVA
LPATSAQREQILRLITTKYRLASTVDLSRVALQTAGFSGSDLDGLCQAAQ
TVPAREFAQALRGARAPERTTRSRRVRTVRSSSSSSSTALSAAPSGGNNI
GSALGDFAQWWTGRTRQMPPPSDGAAGGNVRVAAPATSTSANANSIASTP
IIQMRPMTQEDFDTALGHVRPTGEVAAAFAASEAEEEHAQEQ*
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mRNA from alignment at H-elongata_contig7328:139..5147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7328.15008.1 ID=mRNA_H-elongata_contig7328.15008.1|Name=mRNA_H-elongata_contig7328.15008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5009bp|location=Sequence derived from alignment at H-elongata_contig7328:139..5147+ (Himanthalia elongata Himel1 dioecious)
AAGGCAATCGCCAAGGAATCTGGCGCGACGTTCATCAATGTCCGCATGGG
CGCGGTGACGCAGAAGTACGTCGGAGAGGGAGAGAAGATTGTCGCGGCCA
TCTTCAGGTGGTGTTTAATCGTTTCCCGTGACGACCGACCCCATGTGGAG
CTTTTTGGCGGCGCTTTCGTGAGGGACAACCTACTAGTGCTAAACCCCGC
GACCTAGAGCTCTAGTTGAGATGTAATATGACTGCTGAAGAATTCACCTC
CGGAAGTGTTATGTGCACGATGCGACGTCACTTCAAGATAGGCTCAACAC
TTGGAGAAGTTGTTGTTCGTGCTATTTTTACTTTATATACCATTATTAAC
CGGATATGGCCGATGATTTCTCAGCCCCACTTGGAAGAAAAAAGAAACAC
ACGGGAGGACCAAGTACATTCGTGTATGTACCATATCATGTGGATATACT
GCTTCACAGACATAAAAATACGCTTTTGAGGGGGATCCTCTTGACAGGTC
CGCCGATACGTGGGTTTGAGGTTCGGGCTAGAAGAGTGAATCTAGGAGTG
AATGATCGTAAGGGCAAGAACGTTATCGCGTCGCGACCAGTTTAATCGAG
ACCCCGCTCACCGCCCTCTTACGTAGCGGTCGAATGTCCGGCTAGGCAGT
TCGCGCATGTCGTCTATCTTCCCTTTCATTGACTATGTGTGTCTTTGTGT
GCGTTGGCGTGTTGGCGTGCTTTATTTTTGAAGCCTGGCGCACAAGCTGG
CGCCGTCCATCATCTTCATCGATGAAATCGACTGCTTCTTGAGAAACCGT
ACGGGTTTCGAGCACGACCACGTCCTGAGAATCAAGACTGAGTTCATGAC
TCTGTGGGATGGTCTCCTGACCGGCGAGTTCGAAGCAGTCACGCTACATC
CCATGGATAATACAATGTATAGTATAGCGGAGCATAGTATATATACAGAG
AGTGTACATCGCTTCACCAAGCAATCAAAAGAGTCTACCGGTAAAAAGAG
CAAGATTAATGCTGATGGGGGCTCCGTGTCGAGACAGGGCGCTGGGGTCT
CTCTCACGATGGCGTTAAATCTTGTCGAGGTGTCTTTCTCGCGTTCCGTT
AGGTTGGTGACCACGGTGATATGGGAGGTGGTGCGCTACGTAGTTCTCGC
TATTGAAGCCGGCCGCGGAGGGAGCCTCCCCCCCCCTACTTCCATTTCCC
TCCCTCCTCATGACGTGTCCCTGCTTGCCGCCGTCCCCGCCACCGTCAAA
CAGTGCGCACCAGCCCCGTGATTGTCCTCGGCACCACGAATCGTCCAGCG
GACGTCGACCCCGCCATTCTTCGGCGACTTCCGAGGCAGTTTATCGTGGC
GCTTCCGGCCACCTCTGCGCAGCGGGAGCAGATACTCCGCCTGATCACGA
CGAAGTACAGGCTGGCGAGCACCGTGGACCTGAGCAGAGTGGCCCTGCAG
ACGGCGGGGTGAGCAACATGTGTCTGTACATAATGCCAGGTATCTTAATA
TAACTGCGCATATACAACCCGAGGTACATACTACATTATATATATCTATA
TATATATTATACGGTATACGTCAAAGTTTTTTTCATCACTCGTTTTAGTT
CTTAGATATCCTGGGCAGCGAAATCGTTGTTCGATGTGACCAACCTTATC
TCCATGTAAACTTTCTAGGCTCATCTGTCTTCCGTCTCAAATACGCGTAG
GGAGTTAATTTAATGTGACCAGTTATGTTCTCGTAGCCCGAGTAGCTCAA
TGGGTAACCGTCGAGCCTGTTTGTAGTGCCGAAATCGAAATCGTAAATCG
TGGGTTCGAATCCACAATAATACCAGGTTTGAATATTTTTATTTATTTAG
CGTTAATAGTCTAATCTAGTGCTGTACTTCAGTTATAGTCTAAACAAAGT
TCGGCCATTGGTTGACGAGTTATGGGAGTGGTGAACTTGCATAGATGCGA
TGGTTGTGGACTAACCGGGTTAGTGTATATACCACTCTGGTCCGAAATAT
AAGGACTTTTGACCGTATCTTGGGACAGAAGTTTTTTTTGAGACGGAGTT
TTGAATCGTGTTCTCTAAAACTTGGCGCGGCGGAAACAAGCTAAAGTGGT
CCTTTCGATGAAACTGCCAGCTTGACACATACCAACCAAACGGACCTCGC
CTCACAAACGTGCCCGCTGGGTTTGGGGCAACCTGTTTTTTTTTCAAACC
GGTTTTGAGACGGGAATTCCATTTATCTCCCCGAACCAAATTTCACAAAA
AAATATCTTTTTTTTTTTTGTGAAAAAATAGATCGCGCCAAAGTCGCTGC
TCTCTCGAGCGAAGTTCCTTTGGCAATGAGCTATGCTGCTGCTGCTGGAA
ACCCGGAGATTTCAGATGAAAATACCCGTGTTGTACGCAGGGGAATTTTC
CTTCTGACCCCCTGGGTATGGTACTAACCCATAACATTTCTTCTTTCCTC
TTTCGTGCCTTAACATCATCATAGGGTGCCGAAATGTGAAACGGTCCTTA
TATTTCGGACCAGAGTGGTAATTAGTATACTAGTATATAGTTAGTATATA
GTATCACCCATCGGCAGAAAGTTATACGAAGATCAAATCAGGGCGTTCCG
CGGTGGTATATCGATATTTCATCGTTACTTTTCGACTGACAAACTGGAAA
TACCCGCCCAACCCGCGCCCCCATGACATCATCAAACGAAACCCAGCTTT
TCGGGAAGTGATCTGGATGGCCTGTGCCAGGCGGCGCAAACGGTGCCGGC
GCGAGAGTTTGCCCAAGCCCTTCGAGGAGCGCGGGCCCCCGAGCGCACGA
CTCGATCGCGCCGAGTTCGAACGGTGCGCTCTTCCTCCTCCTCCTCGTCA
ACAGCGCTATCCGCGGCTCCGTCGGGTGGGAATAACATTGGTTCGGCGCT
GGGGGATTTCGCGCAGTGGTGGACGGGGCGGACGAGGCAGATGCCTCCCC
CGAGCGACGGGGCGGCGGGTGGAAACGTGAGGGTGGCCGCGCCGGCGACG
AGCACGAGTGCAAACGCAAACAGCATTGCGAGCACGCCGATCATACAGAT
GCGTCCCATGACACAGGAGGACTTCGATACCGCCTTGGGACACGTTCGGC
CCACAGGCGAGTCGCGCAAAGACCTGGGGGGGATTTCTAAGGTTTTCGTT
GGTCCCCCTCAAAATTTCGTATTTTAAGCTTTCAGGGTTATCGTTAGCGA
TATAACCCAAGCGGGTCTACTGTGCTCAAAAACGTGGATGCGCGCACATG
TAGGCTTTTTGTTGCATGGCGTATGGCTATTTTATTGGCTCAGATTATTG
TGTCCCTATGCGGCAGCTTGTCACCAGGTTCCGGAGCCTGTCGGAAAGAA
CGACTTCGTTCAGTGACCACGGCGCTGTAGCTGTCCTCTTGTAATTTGTG
TGCTTGTCGACGGCGTCGAGACTTTGATCACAGGCCTCAAATGATGTCAT
CCCTCTCCTCCGCGCCCCCCCTCCCCGCCCGCTAGGCGAAGTGGCTGCAG
CCTTCGCCGCGAGTGAAGCGGAGGAAGAGCACGCGCAGGAGCAATAATGA
TGTTTGATAAAAAGATGGCAAATTGGATGTGGTAGAGTAGAGCGGGGAGC
CGCGGTGGAGAGCCCCATCACACCTCCTCCCCTCACCGCCCCTCAGTCCT
GTGGTCATCCTGTTGGAGGCGTTACGTGTGTCGCTTTGTCTCTTCTCTCT
TATGGTATATATGCTTTCTGCGTCTTGCGTTTTTCTGGTATCAAGCGCTT
TGCTTTGGCGCGCCGCTAAAGCTTTTCAGATGTTTGTATTGTAGCCGGAC
TCGGTTCACCGAAAGCGCTCCTAACGCAAGGTGTGTTTGGGATTTTACAC
TCGCGTGCTCGCCGAACAAACTGAAACGTGGGCAGACGATGTTATTTTTG
CCGTCAGCGGAAATACCCCTCCCCCTCTCCTAGAGCAGAGCTTTAAAAGC
TCGGCAGGCGGTTTGGTCTTCAGATGATTGGAACGTGAGCGAGGCGGTAG
GACAAAAATAAAACATGGGAGGCAGTATGTTCTTTCAGTATGAGGTATGT
ATTAAGACGCGATTCGCGGACGTTTTTTGCGTACTAGTGTCTCAGGTGAC
GTTACATACCACACCTCACTTGACTCATGATTAATTTCCCATACGAAAAG
GGAGGGGGGTGCACATACACGGAGAGGGGTGATGGTAAAGTTCCGGATAA
AAGCATGTTTTGACCGGGAGTATGGTGTAAAATACTAAAATACTTATTAC
AGTAAACTCCACCCCTAGAAAATTAGGTATGTGCCATGTGGGAAGAAGCC
ACACCACACGTCGAGACTGTTAAGCTGCTTGCGTCCCTCGCACTTCTTGA
AGCTTCTACCCTTGGCAACGAGCATTCTTACCCCCCCCACCCCCCGCCGC
CGTTCGAAGCTAGCATAGCCTCTTGAGAGAGTCGACGCAACCAAACAGGA
CAGTGTCCGACAAAACCCAATGGGTTGGTTTGGTGCGCTCCGCACCCCGA
AATTTGAACGAGCGTTCACGGAAGTTTCTGGAAAGGAGCGTCTTCCGGCC
TCTGGAGCCAGTTGTCCGACGGATAGCGGTATCCGTCCTTGCCCTCGACG
ACGTGGATGGAATACGCGTGCCTAGACTTTTCCGACGAGTTGGCCTCGCT
GTAGTGGACCAGGGAGTGGTGCAGCAAGACCAGAGTGCCGGCTTTCACCT
AACGGTAGCCACAGCAAATGGTCGTATAAGATGAGGAGGGGGAGGGGGGG
GGTGCAGTTGAAAAAGAGCTCTTCACTCGGTTGTAAGTTAGTTGCGCCCA
TGATTCGAGAGCGAACGAGCTAAACCTGTTTGTTTCCCAAAGGATGTTCC
ATCTGGCGGCGGCTCAGGCTTCCAAGTCGCAGTCTGTACGCGAGTGAGGG
TGTACTTTTTGTAACGCGTGATTTTATTACTCGAGTAATTATATCGCGAA
CGATGCGGGCTAAACTAGCGGACAAGATCGGCGACACGCAATTTTGGCGG
CAAGGGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig7328:139..5147+

>mRNA_H-elongata_contig7328.15008.1 ID=mRNA_H-elongata_contig7328.15008.1|Name=mRNA_H-elongata_contig7328.15008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig7328:139..5147+ (Himanthalia elongata Himel1 dioecious)
ATGGGCGCGGTGACGCAGAAGTACGTCGGAGAGGGAGAGAAGATTGTCGC
GGCCATCTTCAGATGGGCGCGGTGACGCAGAAGTACGTCGGAGAGGGAGA
GAAGATTGTCGCGGCCATCTTCAGCCTGGCGCACAAGCTGGCGCCGTCCA
TCATCTTCATCGATGAAATCGACTGCTTCTTGAGAAACCGTACGGGTTTC
GAGCACGACCACGTCCTGAGAATCAAGACTGAGTTCATGACTCTGTGGGA
TGGTCTCCTGACCGCCTGGCGCACAAGCTGGCGCCGTCCATCATCTTCAT
CGATGAAATCGACTGCTTCTTGAGAAACCGTACGGGTTTCGAGCACGACC
ACGTCCTGAGAATCAAGACTGAGTTCATGACTCTGTGGGATGGTCTCCTG
ACCGTGCGCACCAGCCCCGTGATTGTCCTCGGCACCACGAATCGTCCAGC
GGACGTCGACCCCGCCATTCTTCGGCGACTTCCGAGGCAGTTTATCGTGG
CGCTTCCGGCCACCTCTGCGCAGCGGGAGCAGATACTCCGCCTGATCACG
ACGAAGTACAGGCTGGCGAGCACCGTGGACCTGAGCAGAGTGGCCCTGCA
GACGGCGGGTGCGCACCAGCCCCGTGATTGTCCTCGGCACCACGAATCGT
CCAGCGGACGTCGACCCCGCCATTCTTCGGCGACTTCCGAGGCAGTTTAT
CGTGGCGCTTCCGGCCACCTCTGCGCAGCGGGAGCAGATACTCCGCCTGA
TCACGACGAAGTACAGGCTGGCGAGCACCGTGGACCTGAGCAGAGTGGCC
CTGCAGACGGCGGGCTTTTCGGGAAGTGATCTGGATGGCCTGTGCCAGGC
GGCGCAAACGGTGCCGGCGCGAGAGTTTGCCCAAGCCCTTCGAGGAGCGC
GGGCCCCCGAGCGCACGACTCGATCGCGCCGAGTTCGAACGGTGCGCTCT
TCCTCCTCCTCCTCGTCAACAGCGCTATCCGCGGCTCCGTCGGGTGGGAA
TAACATTGGTTCGGCGCTGGGGGATTTCGCGCAGTGGTGGACGGGGCGGA
CGAGGCAGATGCCTCCCCCGAGCGACGGGGCGGCGGGTGGAAACGTGAGG
GTGGCCGCGCCGGCGACGAGCACGAGTGCAAACGCAAACAGCATTGCGAG
CACGCCGATCATACAGATGCGTCCCATGACACAGGAGGACTTCGATACCG
CCTTGGGACACGTTCGGCCCACAGCTTTTCGGGAAGTGATCTGGATGGCC
TGTGCCAGGCGGCGCAAACGGTGCCGGCGCGAGAGTTTGCCCAAGCCCTT
CGAGGAGCGCGGGCCCCCGAGCGCACGACTCGATCGCGCCGAGTTCGAAC
GGTGCGCTCTTCCTCCTCCTCCTCGTCAACAGCGCTATCCGCGGCTCCGT
CGGGTGGGAATAACATTGGTTCGGCGCTGGGGGATTTCGCGCAGTGGTGG
ACGGGGCGGACGAGGCAGATGCCTCCCCCGAGCGACGGGGCGGCGGGTGG
AAACGTGAGGGTGGCCGCGCCGGCGACGAGCACGAGTGCAAACGCAAACA
GCATTGCGAGCACGCCGATCATACAGATGCGTCCCATGACACAGGAGGAC
TTCGATACCGCCTTGGGACACGTTCGGCCCACAGGCGAAGTGGCTGCAGC
CTTCGCCGCGAGTGAAGCGGAGGAAGAGCACGCGCAGGAGCAATAAGCGA
AGTGGCTGCAGCCTTCGCCGCGAGTGAAGCGGAGGAAGAGCACGCGCAGG
AGCAATAA
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