mRNA_H-elongata_contig73279.15007.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: A0A6H5JF33_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF33_9PHAE) HSP 1 Score: 336 bits (861), Expect = 5.090e-110 Identity = 164/178 (92.13%), Postives = 173/178 (97.19%), Query Frame = 1
Query: 1 QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCEGGGKVS 534
QDLRFKVDTDTRVAIVGPNGVGKSTLL LLSGKLEP++GEVTRHRHLRIGRYDQHFHELLP KSPC+FLRSE+DVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMS PH+LLLDEPTNHLDMESVDALIRGIQEY+GGVVLVSHDARLIA+T CELWVCEGGG+V+
Sbjct: 371 QDLRFKVDTDTRVAIVGPNGVGKSTLLNLLSGKLEPSSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIRGIQEYKGGVVLVSHDARLIAATECELWVCEGGGRVN 548
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: D8LEI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI0_ECTSI) HSP 1 Score: 336 bits (861), Expect = 3.970e-107 Identity = 164/178 (92.13%), Postives = 173/178 (97.19%), Query Frame = 1
Query: 1 QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCEGGGKVS 534
QDLRFKVDTDTRVAIVGPNGVGKSTLL LLSGKLEP++GEVTRHRHLRIGRYDQHFHELLP KSPC+FLRSE+DVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMS PH+LLLDEPTNHLDMESVDALIRGIQEY+GGVVLVSHDARLIA+T CELWVCEGGG+V+
Sbjct: 663 QDLRFKVDTDTRVAIVGPNGVGKSTLLNLLSGKLEPSSGEVTRHRHLRIGRYDQHFHELLPQGKSPCDFLRSEYDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSQPHILLLDEPTNHLDMESVDALIRGIQEYKGGVVLVSHDARLIAATECELWVCEGGGRVN 840
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: A0A7S2RHT7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHT7_9STRA) HSP 1 Score: 256 bits (653), Expect = 2.450e-82 Identity = 124/173 (71.68%), Postives = 144/173 (83.24%), Query Frame = 1
Query: 1 QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCEG 519
+DLRFKVDT +R+AIVG NG GK+TLL LL+G+LEPT GEV+ HRHL IGRYDQHF ELLP K+P EFL SE+ +PEQ+ARK LG FGLDG RHLI I LSGGQKARVVFASL++ PH+L LDEPTNHLDMESV AL+ G++ +QGGVVL+SHDARLI+ ELWVCEG
Sbjct: 49 RDLRFKVDTSSRIAIVGANGSGKTTLLKLLTGQLEPTQGEVSHHRHLVIGRYDQHFEELLPFTKTPVEFLCSEYGLPEQEARKFLGMFGLDGTRHLIRIEALSGGQKARVVFASLALQAPHILCLDEPTNHLDMESVQALVDGLRAFQGGVVLISHDARLISELEMELWVCEG 221
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: Q3U6P1_MOUSE (ABC transporter domain-containing protein (Fragment) n=1 Tax=Mus musculus TaxID=10090 RepID=Q3U6P1_MOUSE) HSP 1 Score: 204 bits (518), Expect = 4.290e-63 Identity = 98/172 (56.98%), Postives = 131/172 (76.16%), Query Frame = 1
Query: 1 QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCE 516
++L F +D D+R+ IVGPNGVGKSTLL LL+GKL PT GE+ ++ L+IG ++Q + E L +E++P E+L+ F++P Q ARK LG+FGL+ H I I +LSGGQKARVVFA L+ P VL+LDEPTN+LD+ES+DAL I +Y+G V++VSHDARLI T C+LWV E
Sbjct: 50 KNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDYKGAVIVVSHDARLITETNCQLWVVE 221
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: A0A0D2WQE0_CAPO3 (ATP-binding cassette sub-family F member 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQE0_CAPO3) HSP 1 Score: 218 bits (555), Expect = 1.830e-62 Identity = 103/171 (60.23%), Postives = 131/171 (76.61%), Query Frame = 1
Query: 4 DLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCE 516
D+ V DTR+ IVGPNGVGKSTLL L+ G+L PT GEV R+R LRIGRY+QHF ++LP++ SP E+L + F+ +Q R LG+FGL H IPI +LSGGQKARVVFA+L PH+L DEPTNHLD+ES+DAL+ I++++GGVV+VSHDARLI T C+LWVC+
Sbjct: 1107 DVNMGVTMDTRMCIVGPNGVGKSTLLNLIIGELNPTEGEVRRNRKLRIGRYNQHFVDVLPMDISPTEYLMNTFNKVNEQCRAQLGRFGLVSHAHTIPIRDLSGGQKARVVFAALVFQEPHILFFDEPTNHLDIESIDALVEAIEQFKGGVVVVSHDARLITETECQLWVCD 1277
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: UPI00080A456E (ATP-binding cassette sub-family F member 1 n=1 Tax=Cebus imitator TaxID=2715852 RepID=UPI00080A456E) HSP 1 Score: 203 bits (517), Expect = 6.920e-62 Identity = 99/172 (57.56%), Postives = 131/172 (76.16%), Query Frame = 1
Query: 1 QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCE 516
++L F +D D+R+ IVGPNGVGKSTLL LL+GKL PT GE+ ++ L+IG ++Q + E L +E++P E+L+ F++P Q ARK LG+FGL+ H I I +LSGGQKARVVFA L+ P VL+LDEPTN+LD+ES+DAL I EY+G V++VSHDARLI T C+LWV E
Sbjct: 133 KNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACQKPDVLILDEPTNNLDIESIDALGEAINEYKGAVIVVSHDARLITETNCQLWVVE 304
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: A0A1I8JDY1_9PLAT (ABC transporter domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JDY1_9PLAT) HSP 1 Score: 200 bits (509), Expect = 1.120e-61 Identity = 100/171 (58.48%), Postives = 125/171 (73.10%), Query Frame = 1
Query: 4 DLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCE 516
DL F VD +R++IVGPNGVGKSTLL +LSG+LEPT GE + RIG+YDQH + L +E +P EFLRS F++ Q ARK LG+FGL+ H I + LSGGQ++RV FA LS P +L+LDEPTN+LD+ES+DAL I E++GGVV+VSHD RLI T C LWV E
Sbjct: 86 DLNFGVDMQSRISIVGPNGVGKSTLLKMLSGELEPTRGERRLNHRARIGKYDQHSGDQLDMEATPVEFLRSLFNLQYQDARKTLGRFGLESHAHEIKMKLLSGGQRSRVAFALLSCRAPDILILDEPTNNLDIESIDALAEAINEFEGGVVIVSHDERLIRDTDCRLWVVE 256
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: A0A0J7NWI1_LASNI (Atp-binding cassette sub-family f member 2 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NWI1_LASNI) HSP 1 Score: 198 bits (504), Expect = 2.700e-61 Identity = 97/176 (55.11%), Postives = 129/176 (73.30%), Query Frame = 1
Query: 1 QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEF-DVPE-QQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCEGG 522
++L F +D DTR+A+VGPNG GKSTLL LL G L PT+G + ++ HLRIGRY QH HELL L+ SP +++ F +V E ++ RK++G++GL G + + PI +LS GQ+ RVVFA L+ PH+LL DEPTNHLDME++DAL I ++ GG+VLVSHD RLI E+WVCE G
Sbjct: 18 KNLEFGIDLDTRLALVGPNGAGKSTLLKLLYGDLVPTSGMIRKNSHLRIGRYHQHLHELLDLDVSPLDYMMKAFPEVKEREEMRKIIGRYGLTGRQQICPIRQLSDGQRCRVVFAWLAWQVPHLLLFDEPTNHLDMETIDALADAINDFDGGMVLVSHDFRLINQVAEEIWVCENG 193
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: A0A812VCJ4_9DINO (ABCF1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VCJ4_9DINO) HSP 1 Score: 212 bits (540), Expect = 3.150e-61 Identity = 100/173 (57.80%), Postives = 133/173 (76.88%), Query Frame = 1
Query: 1 QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEFDVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWVCEG 519
+D+ +D +RVAIVGPNGVGKSTLL L+ G LEPT GE+ R+R LRIG+Y+QHF ++LP++++P ++L+ D Q++R +LG+FGL+ H I +++LSGGQKARVVFASLS H+L +DEPTNHLD+ES+DAL I +QGGV+LVSHDARLI +T C LWV G
Sbjct: 582 KDVSLGIDQSSRVAIVGPNGVGKSTLLNLIMGDLEPTEGEIHRNRFLRIGKYNQHFVDVLPMDETPVQYLQRMHDTKYQESRMMLGRFGLESHAHEIKVSDLSGGQKARVVFASLSKQDSHILFMDEPTNHLDIESIDALADAIGAFQGGVILVSHDARLIEATDCRLWVISG 754
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Match: W7TNJ5_9STRA (Atp-binding cassette sub-family f member 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNJ5_9STRA) HSP 1 Score: 209 bits (532), Expect = 4.600e-61 Identity = 102/169 (60.36%), Postives = 129/169 (76.33%), Query Frame = 1
Query: 7 LRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGRYDQHFHELLPLEKSPCEFLRSEF-DVPEQQARKVLGQFGLDGARHLIPIAELSGGQKARVVFASLSMSHPHVLLLDEPTNHLDMESVDALIRGIQEYQGGVVLVSHDARLIASTGCELWV 510
L F +D D+R+ IVGPNG GKSTLL L++G LEPT GE+ R+ LR+G Y+QHF + LP++KSP E+LRS F D Q R VLG++GL G H IPI +LSGGQKARVVF LS+ PH+L LDEPTN+LD+E++DAL I E+ GGVVLVSHDARLI ++GC +W+
Sbjct: 428 LNFGMDLDSRICIVGPNGSGKSTLLKLVTGALEPTKGEIRRNSKLRMGIYNQHFVDRLPMDKSPIEYLRSLFPDETYQSVRNVLGRYGLQGHAHEIPIRDLSGGQKARVVFVELSLMAPHILFLDEPTNNLDIETIDALCEAINEFNGGVVLVSHDARLIEASGCRVWI 596 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73279.15007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73279.15007.1 >prot_H-elongata_contig73279.15007.1 ID=prot_H-elongata_contig73279.15007.1|Name=mRNA_H-elongata_contig73279.15007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp QDLRFKVDTDTRVAIVGPNGVGKSTLLGLLSGKLEPTTGEVTRHRHLRIGback to top mRNA from alignment at H-elongata_contig73279:360..2851- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73279.15007.1 ID=mRNA_H-elongata_contig73279.15007.1|Name=mRNA_H-elongata_contig73279.15007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2492bp|location=Sequence derived from alignment at H-elongata_contig73279:360..2851- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73279:360..2851- >mRNA_H-elongata_contig73279.15007.1 ID=mRNA_H-elongata_contig73279.15007.1|Name=mRNA_H-elongata_contig73279.15007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig73279:360..2851- (Himanthalia elongata Himel1 dioecious)back to top |