mRNA_H-elongata_contig73252.15003.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73252.15003.1
Unique NamemRNA_H-elongata_contig73252.15003.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: D8LER1_ECTSI (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER1_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 4.830e-151
Identity = 224/265 (84.53%), Postives = 240/265 (90.57%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLGVDV CSDTGCPPV ++A+GL GGT RVSGKISSQYLSALLMAAP SSGE V IEI DELVSAPYVHMTIKLM+KFGVK++NEGD RFT+  GQ+Y SPGTIAVEGDASSASYFLGGAAITGGPVTVRGCG+ SVQGDV+FAEVLEKMGATLTW  N+MTVSR+ + PLRGVDVDCGEIPDAAMTLAVIALFA+GPT IRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYC+V PP  VKP VAIDTYDDHRM +  FSL
Sbjct:  218 QLGVDVSCSDTGCPPVNIKAAGLNGGTTRVSGKISSQYLSALLMAAPLSSGE-VVIEITDELVSAPYVHMTIKLMDKFGVKVKNEGDMRFTIKDGQKYVSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGRDSVQGDVRFAEVLEKMGATLTWEANAMTVSRDLETPLRGVDVDCGEIPDAAMTLAVIALFAEGPTAIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCIVTPPKAVKPRVAIDTYDDHRM-AMCFSL 480          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A7S2XVK4_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVK4_9STRA)

HSP 1 Score: 398 bits (1023), Expect = 6.670e-135
Identity = 206/265 (77.74%), Postives = 223/265 (84.15%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLGVDV CS TGCPPV V A G+ GG  RVSGKISSQ+LSALLM AP +   DV IEI DELVSAPYVHMTIKLM K+GV++ENE D  FTV  GQ+YTSPGTI VEGDASSASYFLGGAAITGGPVTV+GCG  SVQGD+ FA+VL +MGA + WGPNS+TVSR +   L+GVDVDCG IPDAAMTLAVIALFA+GPT IRNVYNWRVKETERMKAIVTEL KLGAEVEEGRDYCVV PP  VK GVAIDTYDDHRM +  FSL
Sbjct:  193 QLGVDVSCSGTGCPPVFVHAKGIEGGLTRVSGKISSQFLSALLMMAPLAKS-DVVIEITDELVSAPYVHMTIKLMAKYGVQVENENDMVFTVKAGQKYTSPGTIFVEGDASSASYFLGGAAITGGPVTVQGCGSESVQGDIDFAKVLGQMGADIEWGPNSITVSRKEGTKLKGVDVDCGSIPDAAMTLAVIALFAEGPTKIRNVYNWRVKETERMKAIVTELSKLGAEVEEGRDYCVVHPPEEVKAGVAIDTYDDHRM-AMCFSL 455          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A836CIT3_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT3_9STRA)

HSP 1 Score: 385 bits (990), Expect = 1.660e-130
Identity = 206/271 (76.01%), Postives = 224/271 (82.66%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENE----GDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKP--PAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLGVDV CSDTGCPPV++ A+G+ GGTARVSGKISSQYLSALLMAAP + G DV IEI DELVSAPYV MT+KLM KFGV+ E      G   FTV  GQRY SPGTIAVEGDASSASYFLGGAAITGGPV V GCG+GSVQGDV+FAEVLEKMGA LTW  ++MTVSR     L+GVDVDCG IPDAAMTLAVIALFA+GPT IRNVY WRVKETERMKAIV EL KLGA+VEEG DYC+V+P  P  +K GVAIDTYDDHRM +  FSL
Sbjct:  143 QLGVDVTCSDTGCPPVRIAAAGIPGGTARVSGKISSQYLSALLMAAPLARG-DVTIEITDELVSAPYVSMTVKLMAKFGVQTEESVGANGAPVFTVRAGQRYVSPGTIAVEGDASSASYFLGGAAITGGPVRVVGCGRGSVQGDVQFAEVLEKMGAKLTWEEDAMTVSREPGVKLKGVDVDCGAIPDAAMTLAVIALFAEGPTAIRNVYTWRVKETERMKAIVAELTKLGADVEEGHDYCIVQPLAPGKMKSGVAIDTYDDHRM-AMCFSL 411          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A6V1NGJ7_HETAK (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NGJ7_HETAK)

HSP 1 Score: 385 bits (988), Expect = 2.750e-130
Identity = 198/265 (74.72%), Postives = 219/265 (82.64%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLGVD+  SDTGCPPV ++A G+RGGT RVSGKISSQY+SALLM AP + G DV IEI DELVSAPYVHMTIKLM+K+GV++ENE D RFTV GGQ+Y SPG   VEGDASSASYFL G AITGGPVTV GCG  SVQGDV FA+VLE+MGAT+ WGPNS+TVSR     L GVDVDCG IPDAAMTL V+ALF +GPT IRNVYNWRVKETERM A+VTEL KLGA  EEGRDY +V P A +KPGVAIDTYDDHR V+  FSL
Sbjct:  142 QLGVDISVSDTGCPPVNIKARGVRGGTTRVSGKISSQYISALLMMAPLAQG-DVVIEIADELVSAPYVHMTIKLMKKYGVEVENEDDMRFTVRGGQKYVSPGVAYVEGDASSASYFLAGGAITGGPVTVHGCGAESVQGDVDFAKVLEQMGATVEWGPNSITVSRAPGQKLVGVDVDCGAIPDAAMTLGVVALFCEGPTAIRNVYNWRVKETERMVAMVTELTKLGARCEEGRDYLIVHPLADIKPGVAIDTYDDHR-VAMCFSL 404          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A7S1UKH8_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKH8_9STRA)

HSP 1 Score: 382 bits (980), Expect = 1.300e-128
Identity = 190/264 (71.97%), Postives = 220/264 (83.33%), Query Frame = 1
Query:    4 LGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            L V++ECSDTGCPPV + A GL GGTA VSGKISSQYLSALLMAAP +SG D+ I+I+DELVSAPYVHMTIKL+EKFGVK++N+ D+ FT+  GQ+  SPGT  VEGDASSASYFL G AITGGPVTV GCG  SVQGD +FAEVL KMGA + W PNS+TVSR+   PL+GVD DCG+IPDAAMTLA +AL A+GPT +RNVYNWRVKETERM+AIV EL KLG E EEG DY VV PPA +KPGV+I+TYDDHR ++ +FSL
Sbjct:  177 LDVELECSDTGCPPVTINAKGLAGGTAEVSGKISSQYLSALLMAAPLASG-DITIKIKDELVSAPYVHMTIKLLEKFGVKVDNDSDRVFTIKAGQKLVSPGTAFVEGDASSASYFLAGGAITGGPVTVIGCGSESVQGDTRFAEVLGKMGAKVEWAPNSITVSRDMSTPLKGVDEDCGDIPDAAMTLATVALHAEGPTKVRNVYNWRVKETERMRAIVDELAKLGVETEEGEDYLVVHPPASIKPGVSIETYDDHR-IAMVFSL 438          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A7S2RGT1_9STRA (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGT1_9STRA)

HSP 1 Score: 366 bits (939), Expect = 4.450e-122
Identity = 185/258 (71.71%), Postives = 211/258 (81.78%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRM 774
            QLG DV CSDTGCPPV + A  L+GG AR+SGKISSQ+LSALLMAAP +SG DV +EI DELVSAPYV +T  LM K+GV ++   + +F VPGGQ+Y+SPG + VEGDASSASYFL   AITGGPV V GCG  SVQGDV FA VLE MGA + W PN++TVSR+    L GVDVDCGEIPDAAMTLAV+ALFA GPT IRNVYNWR+KETERMKAIVTELGKLG EVEEGRD+CV++PP  ++P VAIDTYDDHRM
Sbjct:  201 QLGADVTCSDTGCPPVHINAEPLKGGVARISGKISSQFLSALLMAAPLASG-DVTVEITDELVSAPYVMLTAGLMAKYGVDVD-VSELQFRVPGGQKYSSPGNVFVEGDASSASYFLALGAITGGPVKVIGCGSESVQGDVGFARVLESMGAKVEWEPNAITVSRDPDVELHGVDVDCGEIPDAAMTLAVVALFATGPTAIRNVYNWRLKETERMKAIVTELGKLGVEVEEGRDFCVIQPPKSIRPNVAIDTYDDHRM 456          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A5J4Z8J0_PORPP (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8J0_PORPP)

HSP 1 Score: 363 bits (931), Expect = 5.610e-120
Identity = 186/266 (69.92%), Postives = 210/266 (78.95%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIE-NEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLG  V CSDTGCPPV+V A+GL GG ARVSGKISSQYLSALLM AP +  E V +EI+DELVS PYV MT+ LM++FGV +E N+    FT+P GQ Y SPGT+ VEGDASSASYF  G AITGGP+ V GCG  S+QGD+ F  VLEKMGA + W  NS+TVSR+    LRGVDVDCG+IPDAAMTLAV+ALFA G T IRNVYNWRVKETERMKAIVTEL KLGA VEEG DYC++ PPA + P VAIDTYDDHRM +  FSL
Sbjct:  269 QLGAKVTCSDTGCPPVRVEANGLPGGVARVSGKISSQYLSALLMVAPLAKSE-VTLEIKDELVSVPYVLMTVNLMKRFGVHVEVNDEKTSFTIPAGQSYQSPGTVFVEGDASSASYFSAGGAITGGPMKVLGCGSESIQGDIDFTRVLEKMGAKVEWSANSITVSRDAGVKLRGVDVDCGDIPDAAMTLAVVALFADGKTAIRNVYNWRVKETERMKAIVTELRKLGAHVEEGHDYCIIDPPARINPDVAIDTYDDHRM-AMCFSL 532          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: R7QRX5_CHOCR (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRX5_CHOCR)

HSP 1 Score: 357 bits (915), Expect = 1.190e-118
Identity = 189/268 (70.52%), Postives = 212/268 (79.10%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVR--ASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIE-NEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLG DVECSDTGCPPV++R   +GL GG ARVSGKISSQYLSALL+AAP ++ EDV I I DELVS PYV MTI LM KFGV ++ +EG+  F V  GQ+Y SPG   VEGDASSASYFL GAAITGGPVTVRGCG  SVQGDV FA ++  MGA + W  NS+TVSR     L+GVDVDC +IPDAAM+LA  ALFA+GPT IRNVYNWRVKETERMKAIVTEL KLGAEVEEGRDYCV+ PP  ++  V IDTYDDHRM +  FSL
Sbjct:  182 QLGADVECSDTGCPPVRIRNTEAGLPGGVARVSGKISSQYLSALLIAAPMAN-EDVTIRITDELVSVPYVKMTINLMNKFGVDVQVDEGNTEFVVKKGQQYVSPGEYFVEGDASSASYFLAGAAITGGPVTVRGCGSESVQGDVDFARIMGLMGAKVEWEANSITVSREPGTKLKGVDVDCVDIPDAAMSLATTALFAEGPTAIRNVYNWRVKETERMKAIVTELRKLGAEVEEGRDYCVIHPPKTIRENVPIDTYDDHRM-AMAFSL 447          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A813CZ13_POLGL (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813CZ13_POLGL)

HSP 1 Score: 353 bits (905), Expect = 2.420e-117
Identity = 193/281 (68.68%), Postives = 216/281 (76.87%), Query Frame = 1
Query:    1 QLGVDVECSDT----GCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEG---DK-----RFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNK--KFPLRGVDVDCGEIPDAAMTLAVIALFAQG--PTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLG  VEC+      GCPPV+V A G+ GG   +SGKISSQY+S+LLMAAP +    V IE++DELVS PYV MTI LM++FGV +E E    DK     R+TV GGQ Y SPGT  VEGDAS ASYFLGGAAITGGPVTV GCG  SVQGD+KFA VLE+MG T+ W PNS+TVSR      PL+GVDVDCGEIPDAAMTL VIALFAQ   PT +RNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYC+V+P A +KP V IDTYDDHRM +  FSL
Sbjct:  153 QLGSPVECTQNPPYGGCPPVRVDADGIEGGKCVISGKISSQYISSLLMAAPLAKTGPVIIEVKDELVSKPYVDMTIGLMKQFGVIVEVEELSEDKNAPRPRYTVRGGQCYVSPGTYYVEGDASGASYFLGGAAITGGPVTVEGCGSTSVQGDIKFANVLEQMGCTVEWKPNSITVSRKTDGSQPLKGVDVDCGEIPDAAMTLTVIALFAQDGKPTAVRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCIVQPLASIKPNVLIDTYDDHRM-AMCFSL 432          
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Match: A0A2V3J3T4_9FLOR (3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3T4_9FLOR)

HSP 1 Score: 348 bits (894), Expect = 1.620e-115
Identity = 185/267 (69.29%), Postives = 213/267 (79.78%), Query Frame = 1
Query:    1 QLGVDVECSDTGCPPVKVR-ASGLRGGTARVSGKISSQYLSALLMAAPFSSGEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIE-NEGDKRFTVPGGQRYTSPGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKMGATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTTIRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAIDTYDDHRMVSQLFSL 795
            QLG DVECS+TGCPPV +R +SGL GG A VSGKISSQYLSALLMAAP +  +DV I I+D LVS PYV MTI LM ++GV+++ N+   +FT+   Q+Y SPG + VEGDASSASYFL GAAITGG VTV GCG  S+QGDV FA VLE+MGA + W  NS+TVSR     LRGVDVDCG+IPDAAM+LA  ALFA+G T IRNVYNWRVKETERMKAIVTEL KLGA+VEEG DYCV+ PP ++KP VAIDTYDDHRM +  FSL
Sbjct:  183 QLGADVECSNTGCPPVTIRNSSGLPGGEAYVSGKISSQYLSALLMAAPLAK-KDVTIIIKDTLVSVPYVKMTINLMARYGVRVDVNQQYTQFTIASQQQYKSPGQVFVEGDASSASYFLAGAAITGGAVTVSGCGSDSIQGDVDFARVLEQMGAQVEWEKNSITVSRETGTELRGVDVDCGDIPDAAMSLATTALFAKGQTAIRNVYNWRVKETERMKAIVTELRKLGADVEEGYDYCVITPPGVIKPEVAIDTYDDHRM-AMAFSL 447          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73252.15003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER1_ECTSI4.830e-15184.533-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S2XVK4_9STRA6.670e-13577.743-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A836CIT3_9STRA1.660e-13076.013-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A6V1NGJ7_HETAK2.750e-13074.723-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S1UKH8_9STRA1.300e-12871.973-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A7S2RGT1_9STRA4.450e-12271.713-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A5J4Z8J0_PORPP5.610e-12069.923-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
R7QRX5_CHOCR1.190e-11870.523-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A813CZ13_POLGL2.420e-11768.683-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]
A0A2V3J3T4_9FLOR1.620e-11569.293-phosphoshikimate 1-carboxyvinyltransferase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73252contigH-elongata_contig73252:182..2930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score441.8
Seed ortholog evalue2.2e-121
Seed eggNOG ortholog2880.D8LER1
KEGG rclassRC00350
KEGG koko:K00800,ko:K10669
KEGG ReactionR03460
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0003674,GO:0003824,GO:0003866,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0008150,GO:0008152,GO:0009058,GO:0009423,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046417,GO:0071704,GO:1901576
EggNOG free text desc.shikimate 3-dehydrogenase (NADP ) activity
EggNOG OGsCOG0169@1,KOG0692@2759
EC2.5.1.19,2.7.1.160
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons5
Model size795
Cds size795
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73252.15003.1prot_H-elongata_contig73252.15003.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73252 182..2930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.5140278-CDS-H-elongata_contig73252:181..3291622931134.5140278-CDS-H-elongata_contig73252:181..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 182..329 -
1691679712.4406488-CDS-H-elongata_contig73252:181..3291691679712.4406488-CDS-H-elongata_contig73252:181..329Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 182..329 -
1622931134.5275795-CDS-H-elongata_contig73252:705..7851622931134.5275795-CDS-H-elongata_contig73252:705..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 706..785 -
1691679712.4558108-CDS-H-elongata_contig73252:705..7851691679712.4558108-CDS-H-elongata_contig73252:705..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 706..785 -
1622931134.5423026-CDS-H-elongata_contig73252:1505..16581622931134.5423026-CDS-H-elongata_contig73252:1505..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 1506..1658 -
1691679712.467915-CDS-H-elongata_contig73252:1505..16581691679712.467915-CDS-H-elongata_contig73252:1505..1658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 1506..1658 -
1622931134.553856-CDS-H-elongata_contig73252:2107..22851622931134.553856-CDS-H-elongata_contig73252:2107..2285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 2108..2285 -
1691679712.4778087-CDS-H-elongata_contig73252:2107..22851691679712.4778087-CDS-H-elongata_contig73252:2107..2285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 2108..2285 -
1622931134.5650399-CDS-H-elongata_contig73252:2694..29301622931134.5650399-CDS-H-elongata_contig73252:2694..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 2695..2930 -
1691679712.486838-CDS-H-elongata_contig73252:2694..29301691679712.486838-CDS-H-elongata_contig73252:2694..2930Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73252 2695..2930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73252.15003.1

>prot_H-elongata_contig73252.15003.1 ID=prot_H-elongata_contig73252.15003.1|Name=mRNA_H-elongata_contig73252.15003.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
QLGVDVECSDTGCPPVKVRASGLRGGTARVSGKISSQYLSALLMAAPFSS
GEDVAIEIEDELVSAPYVHMTIKLMEKFGVKIENEGDKRFTVPGGQRYTS
PGTIAVEGDASSASYFLGGAAITGGPVTVRGCGKGSVQGDVKFAEVLEKM
GATLTWGPNSMTVSRNKKFPLRGVDVDCGEIPDAAMTLAVIALFAQGPTT
IRNVYNWRVKETERMKAIVTELGKLGAEVEEGRDYCVVKPPAMVKPGVAI
DTYDDHRMVSQLFSL
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mRNA from alignment at H-elongata_contig73252:182..2930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73252.15003.1 ID=mRNA_H-elongata_contig73252.15003.1|Name=mRNA_H-elongata_contig73252.15003.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2749bp|location=Sequence derived from alignment at H-elongata_contig73252:182..2930- (Himanthalia elongata Himel1 dioecious)
CAGCTCGGCGTTGACGTAGAGTGCTCGGACACAGGCTGCCCGCCGGTGAA GGTCCGAGCTTCGGGGCTCAGGGGAGGAACGGCGCGCGTGAGCGGCAAGA TATCTTCACAGTACCTGTCCGCCCTGCTCATGGCCGCACCTTTTTCGTCC GGGGAAGACGTCGCGATCGAGATCGAAGACGAGCTGGTATCCGCCCCCTA CGTGCACATGACTATCAAGCTCATGGAGAAATTCGGGTGAGGTGGGTTTC GTCTGGCGTCTCTCCCAAAAGGTGTGCGGGGGTAAAGATTATCGAGAAAG GTCTCGCTTGATCGGGAGCTTAAGGCAGTGTGTGCGGCAACACTTCGTCG ACGCGTGAGACGGGCGAATCGAGACACACACGCGTAAGCTAGGTTTAAGA ATGGCTTTCGAAGGGGAACACAAGGGAAAAGGGGTCGCTGGACATACCTC ACCCCTCGAGTTAAGAACGATAGAAGGGTGCGTTGTACGCGATTCTGTTA TGTTTCGTCACGTGCAAGGCTGATGCTGCATACGCTCAAGTACTATTTTG AACAAATCTGTTCTAGAGATCAATCGCCAGTCGGAAAAAGATACCCACCT TGCACCGCCCCCAAACCCGCCCACGGCGACGCCTCCCTCTCCCAGCGTCA AGATTGAAAATGAGGGGGACAAACGCTTCACCGTCCCCGGGGGACAGAGG TACACGTCACCGGGGACGATCGCCGTGGAAGGCGACGCGTCCTCGGCATC TTACTTCTTGGGGGGGGCGGCCATCACGGGGGGTCCCGTGACGGTTCGAG GGTGCGGAAAAGGCAGCGTGCAGGTGGGCGTTTTTTTTTCGGTCGGCGTC CGAAGTTGTCTCTGACAGCATTCTAGGGAGCAGTTCGCTTTTTTTCTTCT TTGTAAAAACAAACCCAAGCGACACCCCTTTTTCTCGTTGCGCTCTCTCC CCCGAAAGAGGTGACCTGACCAGATTTTCCATTATATCTATATGTAGAAT GTAGATATATGTATTTATCCTTGAGTTTGATTGGCGGCGCAATAGCAGCG GCAGCGAGAGATAGAAAAAGTGATTCTCGATCTTCGATGGCATTTATTTT TTATTTTTTATCACGAATAGTCTTGACCCCCCTTCGGAGAGTGTAGGTGA AGAGAGAGATAGAGAGAGAGTGTGTCGTGATACCGCCCTTCCCAAGGATG TTTTTAGTAGAGACCCGATACAATAGCTCCTCTCTTTCTCATATTTCGTC TGGCTTTTTTCACCCCCCACAGGGAGACGTTAAGTTCGCCGAGGTCCTTG AAAAGATGGGGGCGACTCTGACCTGGGGGCCCAACTCCATGACGGTCAGT AGAAACAAAAAATTTCCGCTCAGGGGAGTGGATGTGGACTGCGGAGAGAT TCCGGACGCGGCGATGACCTTGGCGGTGAGCGCGAGTCAGAGGTGGCGTG CTTTTGGAGCTAAAATGGAAGGGCTCTAAACGCGAAGACCTATTCGAAAT GGCGCGGTGTAAAGGTCACAACTCATGCGGCCTTGGTAGGAGACAGTTGT TATCTCCACTTTGACCCACGATTACTCGGTAGACTGTGAGGGTCGTTGTG AGAATCGCCTCTCTGTCTTCCTCAGGGATGTGTCCAGCCCCTTCTACGAG AGAGAAATGGTCCTCGCCCCCGTCGATGCGACTCTCGCAAGCGCTCGCTT GACATCTTGGTTGATTTTCTTCCCGTGTCCGAAAACGTTTTTTCACGTGT ACCAATTGTGACATCCTCTCGTTCGGAGAAATAAATTGGCTATCATATGC CCCGTTTGACAGATTTAAAGTTATACAATATTAGAGTGGTATATGGCGGC TTGCTTTACAGCCGTAAGAAAGAGAGGGGTCATGTGTTATTGGTGGATCG CGGCTCCTTCGGATGTTCATTTCACACTCCACGCCATGCCGTAGTAGGGG CGTTGACAAGCGGCGCTAAAGGAGTCGCTGGGATGGAAAGAAAAAGCCTC TCCGGGGACGAGAGAGACGAAGCCCCACGTTTTCGTAAACCGCCCTAGGC TACACGTGGTTGTGTACTTGCGCGTTTTTTGTGAGGCAGGGACCGTGCTT CGCGCGTTTGCGGCCTTGCTCGTTGCCACCGCCAAACTTGCGCAGGTTAT CGCCCTCTTCGCCCAGGGTCCGACCACCATCCGAAACGTTTACAACTGGC GGGTGAAGGAAACAGAGCGCATGAAGTGAGCCACACACACCCACACGGGT ATGAGTCGCGGCGATTAAGTTGTTTGAGCGGTGCGGTGCTGAGGTCAATA ATTTAAGATTGTGGTTTTGTCATCAGAGAGAGAGATTAGCAAAATCGCAA GCGAGTTTTAGGTCTATTTTGTGGGAAGCGTGCGTCGTCAAGCGTCAAAA AGGAAGTGAATTGTCTCATCTCAACGTTGTTCCTTTGGGTGTTCTCTCAA CACTCTCCATTATTCCTTGATCCAGGTCCTTCCCGCAGTCTATCTCCGAC TTTCCTCTATACCACAGTCTATGTAACTAAGGTGTGATATCCTAAGCCAA AGCAACTGTTTGTCGGCGGCATGCCCCTCTCGGGATTCCTCTGCGGAACA GGGCGATCGTGACCGAGCTGGGCAAGCTCGGGGCGGAGGTGGAAGAAGGA CGTGATTACTGCGTCGTCAAGCCCCCCGCAATGGTCAAGCCTGGGGTGGC CATCGACACTTACGATGATCACCGAATGGTGAGTCAGCTCTTCTCTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig73252:182..2930-

>mRNA_H-elongata_contig73252.15003.1 ID=mRNA_H-elongata_contig73252.15003.1|Name=mRNA_H-elongata_contig73252.15003.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig73252:182..2930- (Himanthalia elongata Himel1 dioecious)
CAGCTCGGCGTTGACGTAGAGTGCTCGGACACAGGCTGCCCGCCGGTGAA
GGTCCGAGCTTCGGGGCTCAGGGGAGGAACGGCGCGCGTGAGCGGCAAGA
TATCTTCACAGTACCTGTCCGCCCTGCTCATGGCCGCACCTTTTTCGTCC
GGGGAAGACGTCGCGATCGAGATCGAAGACGAGCTGGTATCCGCCCCCTA
CGTGCACATGACTATCAAGCTCATGGAGAAATTCGGCAGCTCGGCGTTGA
CGTAGAGTGCTCGGACACAGGCTGCCCGCCGGTGAAGGTCCGAGCTTCGG
GGCTCAGGGGAGGAACGGCGCGCGTGAGCGGCAAGATATCTTCACAGTAC
CTGTCCGCCCTGCTCATGGCCGCACCTTTTTCGTCCGGGGAAGACGTCGC
GATCGAGATCGAAGACGAGCTGGTATCCGCCCCCTACGTGCACATGACTA
TCAAGCTCATGGAGAAATTCGGCGTCAAGATTGAAAATGAGGGGGACAAA
CGCTTCACCGTCCCCGGGGGACAGAGGTACACGTCACCGGGGACGATCGC
CGTGGAAGGCGACGCGTCCTCGGCATCTTACTTCTTGGGGGGGGCGGCCA
TCACGGGGGGTCCCGTGACGGTTCGAGGGTGCGGAAAAGGCAGCGTGCAG
CGTCAAGATTGAAAATGAGGGGGACAAACGCTTCACCGTCCCCGGGGGAC
AGAGGTACACGTCACCGGGGACGATCGCCGTGGAAGGCGACGCGTCCTCG
GCATCTTACTTCTTGGGGGGGGCGGCCATCACGGGGGGTCCCGTGACGGT
TCGAGGGTGCGGAAAAGGCAGCGTGCAGGGAGACGTTAAGTTCGCCGAGG
TCCTTGAAAAGATGGGGGCGACTCTGACCTGGGGGCCCAACTCCATGACG
GTCAGTAGAAACAAAAAATTTCCGCTCAGGGGAGTGGATGTGGACTGCGG
AGAGATTCCGGACGCGGCGATGACCTTGGCGGGAGACGTTAAGTTCGCCG
AGGTCCTTGAAAAGATGGGGGCGACTCTGACCTGGGGGCCCAACTCCATG
ACGGTCAGTAGAAACAAAAAATTTCCGCTCAGGGGAGTGGATGTGGACTG
CGGAGAGATTCCGGACGCGGCGATGACCTTGGCGGTTATCGCCCTCTTCG
CCCAGGGTCCGACCACCATCCGAAACGTTTACAACTGGCGGGTGAAGGAA
ACAGAGCGCATGAAGTTATCGCCCTCTTCGCCCAGGGTCCGACCACCATC
CGAAACGTTTACAACTGGCGGGTGAAGGAAACAGAGCGCATGAAGGCGAT
CGTGACCGAGCTGGGCAAGCTCGGGGCGGAGGTGGAAGAAGGACGTGATT
ACTGCGTCGTCAAGCCCCCCGCAATGGTCAAGCCTGGGGTGGCCATCGAC
ACTTACGATGATCACCGAATGGTGAGTCAGCTCTTCTCTCTCGGCGATCG
TGACCGAGCTGGGCAAGCTCGGGGCGGAGGTGGAAGAAGGACGTGATTAC
TGCGTCGTCAAGCCCCCCGCAATGGTCAAGCCTGGGGTGGCCATCGACAC
TTACGATGATCACCGAATGGTGAGTCAGCTCTTCTCTCTC
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