mRNA_H-elongata_contig7325.15001.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7325.15001.1
Unique NamemRNA_H-elongata_contig7325.15001.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: D8LL60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL60_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.340e-46
Identity = 76/91 (83.52%), Postives = 87/91 (95.60%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            VV+GSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGV++FTSK GK++AAVSFCETT+VLF +LS EE+ AYI+TREPMDK+G+Y
Sbjct:  108 VVVGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVSIFTSKLGKDKAAVSFCETTQVLFTALSAEEIRAYIRTREPMDKSGSY 198          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: W7UAS6_9STRA (Acetylserotonin o-methyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAS6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.350e-31
Identity = 62/96 (64.58%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEE-----AAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            +VIGSDTIVD DG+ILEKP D +HA++MLSSLSGR HLVHSGVA+++SKG K         VSFCET  V FA LS EE+  YI++ EPMDKAG Y
Sbjct:  156 IVIGSDTIVDRDGIILEKPEDAQHAYAMLSSLSGRTHLVHSGVAIYSSKGPKSGDGIPLPVVSFCETARVDFAPLSEEEIWNYIRSGEPMDKAGGY 251          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: A0A836CIZ2_9STRA (Inosine triphosphate pyrophosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 9.310e-31
Identity = 56/91 (61.54%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            +V+GSDTIV+LDG ILEKP D +HAF ML SLSGRRHLVHSGVA+FT   G  + A  + +TT V F ++S +E+ AY+++ EPMDKAGAY
Sbjct:   95 IVVGSDTIVELDGTILEKPDDAQHAFRMLKSLSGRRHLVHSGVAVFTGACGSAQPAACWYDTTSVEFLAMSDDEIWAYVESGEPMDKAGAY 185          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: A0A7S2S2U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2U2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.820e-27
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    4 VIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            V+G+DTIVDLDG +LEKP  ++ A + L  LSGR H VHS VA+F+S+ G  E  +SFCETT V F  LS  E++AY+ + EPMDKAG+Y
Sbjct:  126 VVGADTIVDLDGEVLEKPSSEQDAAATLRRLSGRAHFVHSSVAIFSSRHGVAEPVISFCETTRVKFGQLSDAEISAYVASGEPMDKAGSY 215          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: A0A0G4GLH8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLH8_VITBC)

HSP 1 Score: 108 bits (271), Expect = 5.700e-27
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            VVIG+DTIVDLDGVILEKP + + A SMLS +SGR H VH+GVA+FT + G  E    F E+T+V FA LS  E+ +Y+ + EPMDKAG Y
Sbjct:  163 VVIGADTIVDLDGVILEKPANHDDAVSMLSRMSGRCHAVHTGVAIFTRRAGPAEPVAHFVESTKVKFAPLSRSEIDSYVASGEPMDKAGGY 253          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: A0A0P1AIL8_PLAHL (Septum formation protein maf n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIL8_PLAHL)

HSP 1 Score: 104 bits (259), Expect = 2.650e-26
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            VVIG DT+V LDG ILEKP+D++ AF+MLS LS R H V+SGVALFT+K G +   + F E T ++F  L PE++ AYI T EPMDKAG+Y
Sbjct:   85 VVIGCDTVVVLDGEILEKPKDEDDAFNMLSKLSDRSHEVYSGVALFTTKRGNDNPLLFF-EKTLLVFGRLEPEDIRAYIATGEPMDKAGSY 174          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: A0A421FIL6_9STRA (Uncharacterized protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FIL6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.780e-26
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            VVIG DT+V  DGVILEKP+D+E AF+ML+ LSGR H V+SGVALFT++ G E   + F E T V+F  L P ++ AYI T EPMDKAG+Y
Sbjct:   87 VVIGCDTVVVHDGVILEKPKDEEDAFAMLTKLSGRPHEVYSGVALFTAERGGENPHLFF-EKTSVVFGPLEPADIRAYIATGEPMDKAGSY 176          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: F0V9W8_NEOCL (Putative septum formation protein maf n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0V9W8_NEOCL)

HSP 1 Score: 107 bits (267), Expect = 5.770e-26
Identity = 49/90 (54.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query:    4 VIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            VIG+DT+VDLDG ILEKP+D+E A  ML+ LSGR H VH+ V L++ +GG E    +F ETT+V   +   E++ AY++T EPMDKAG+Y
Sbjct:  223 VIGADTVVDLDGQILEKPKDEEDALQMLTRLSGRTHAVHTAVCLYSRQGGAERPVAAFVETTKVTMVAFGHEDIKAYVRTGEPMDKAGSY 312          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: A0A225VQ72_9STRA (Septum formation protein Maf n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VQ72_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.450e-26
Identity = 55/91 (60.44%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            VVIG DT+V  DGVILEKP+D+E AF ML+ LSGR H V SGVALFT++ G +   + F E T ++F  L PE++ AYI T EPMDKAGAY
Sbjct:   85 VVIGCDTVVVQDGVILEKPQDEEDAFDMLTKLSGRPHEVFSGVALFTAERGADNPHLFF-ERTNLVFGPLEPEDIHAYIATGEPMDKAGAY 174          
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Match: A0A086LK84_TOXGO (Putative septum formation protein maf (Fragment) n=1 Tax=Toxoplasma gondii RUB TaxID=935652 RepID=A0A086LK84_TOXGO)

HSP 1 Score: 102 bits (255), Expect = 8.440e-26
Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKGGKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY 273
            +VIG+DTIV+LDG ILEKP+D++ A  ML+SLSGR H VH+ V+L++ +GG E    +F ETT+V   +L  +++ AY++T +P+DKAG +
Sbjct:   37 IVIGADTIVELDGQILEKPKDEQDARRMLASLSGRTHAVHTAVSLYSRQGGAEHPVAAFVETTKVTMVALGSDDIEAYVRTGDPIDKAGKF 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7325.15001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL60_ECTSI1.340e-4683.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7UAS6_9STRA1.350e-3164.58Acetylserotonin o-methyltransferase n=3 Tax=Monodo... [more]
A0A836CIZ2_9STRA9.310e-3161.54Inosine triphosphate pyrophosphatase-like protein ... [more]
A0A7S2S2U2_9STRA3.820e-2756.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A0G4GLH8_VITBC5.700e-2759.34Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0P1AIL8_PLAHL2.650e-2659.34Septum formation protein maf n=1 Tax=Plasmopara ha... [more]
A0A421FIL6_9STRA4.780e-2660.44Uncharacterized protein n=5 Tax=Phytophthora kerno... [more]
F0V9W8_NEOCL5.770e-2654.44Putative septum formation protein maf n=1 Tax=Neos... [more]
A0A225VQ72_9STRA6.450e-2660.44Septum formation protein Maf n=1 Tax=Phytophthora ... [more]
A0A086LK84_TOXGO8.440e-2650.55Putative septum formation protein maf (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7325contigH-elongata_contig7325:555..1614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.2e-36
Seed eggNOG ortholog2880.D8LL60
Preferred nameASMTL
KEGG rclassRC00055,RC00523
KEGG koko:K01868,ko:K06287
KEGG ReactionR03663
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.nucleoside-triphosphate diphosphatase activity
EggNOG OGsCOG0424@1,KOG1509@2759
EC6.1.1.3
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMaf-like protein
Ec32 orthologEc-25_000130.1
Exons3
Model size273
Cds size273
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7325.15001.1prot_H-elongata_contig7325.15001.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7325 555..1614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.2759342-CDS-H-elongata_contig7325:554..5841622931134.2759342-CDS-H-elongata_contig7325:554..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7325 555..584 +
1691679712.2952335-CDS-H-elongata_contig7325:554..5841691679712.2952335-CDS-H-elongata_contig7325:554..584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7325 555..584 +
1622931134.2947698-CDS-H-elongata_contig7325:1045..12541622931134.2947698-CDS-H-elongata_contig7325:1045..1254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7325 1046..1254 +
1691679712.306539-CDS-H-elongata_contig7325:1045..12541691679712.306539-CDS-H-elongata_contig7325:1045..1254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7325 1046..1254 +
1622931134.3150826-CDS-H-elongata_contig7325:1580..16141622931134.3150826-CDS-H-elongata_contig7325:1580..1614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7325 1581..1614 +
1691679712.3256748-CDS-H-elongata_contig7325:1580..16141691679712.3256748-CDS-H-elongata_contig7325:1580..1614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7325 1581..1614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7325.15001.1

>prot_H-elongata_contig7325.15001.1 ID=prot_H-elongata_contig7325.15001.1|Name=mRNA_H-elongata_contig7325.15001.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
VVIGSDTIVDLDGVILEKPRDDEHAFSMLSSLSGRRHLVHSGVALFTSKG
GKEEAAVSFCETTEVLFASLSPEEVTAYIKTREPMDKAGAY
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mRNA from alignment at H-elongata_contig7325:555..1614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7325.15001.1 ID=mRNA_H-elongata_contig7325.15001.1|Name=mRNA_H-elongata_contig7325.15001.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-elongata_contig7325:555..1614+ (Himanthalia elongata Himel1 dioecious)
GTGGTGATAGGCTCCGACACGATCGTTGACGTGAGGTTCACACAGCATGT ATCCTCGATCCTCGGTGTTACTATTAATATGAATAGTGTTCCACGAAGGA GTAAATCATGCTGTAAATTAGATAAGTGTGTAGTGTATAGTGTGTACCTT ATACTCTGTACAAGGGGAGGGGCGGCGCGGCAGAACATCATTTTTGATAT TATTGGTTAAGTGATACTGTACAGGTGCTGTGCTGTGCTGTGCTGGAGAT AAAAATAAAATAATGCACATCTAAATGTTATCCTGGCTCTAGTGTGTGTC TATAGCTATGCCTATATGTCTATTGTCTGTGTGTGCCTGGCGGCGATATC TTCCATGTATTTTAGTCAGAGCTGAGTTATGCCACAAAAGCGAAGATTTT TTACAAGTTTCTGTCTGAGTATTAATAGGGTAAAATACATCGCCTCGCGA GTCATTGCGGTCGCCGAATGTGTCCCACGCTCCGATCACAGCTGGACGGC GTAATTCTGGAAAAACCAAGGGACGACGAACACGCGTTTTCAATGCTGTC CAGCCTCAGCGGGCGACGGCACCTGGTCCACTCTGGAGTGGCGCTTTTCA CGTCCAAAGGAGGGAAGGAAGAGGCAGCGGTCAGCTTCTGCGAAACCACG GAGGTGCTGTTTGCCTCCTTGTCGCCGGAAGAGGTTACAGCATACATCAA GTGAGAGCTTACATTGCAGTACATTGCAGTACTGTACACTATGGTAACGC CTTACATAGCGCCATGCTGCCATGTCATAGTTGTAATCGCAGGACATTCC TCCCCGTGAGGGTGAGCCGTTTATACTATACTATGATATACTATACTATG ATATAATATACTATACTCGTGTTATACTATACTGGTGTTGTACTATACTC GTGTAGTACCTACTACCGAGCGTCCAACGTCACGAGCACTGTGGAAAATG GCTCTCTGGGTCATTTTCGGGCATTGTGATCACCATCACACCCTGCTCTG TTGATGTTACTTGCTGTTACTTGCAGGACGCGAGAACCGATGGATAAAGC TGGGGCTTAC
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Coding sequence (CDS) from alignment at H-elongata_contig7325:555..1614+

>mRNA_H-elongata_contig7325.15001.1 ID=mRNA_H-elongata_contig7325.15001.1|Name=mRNA_H-elongata_contig7325.15001.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig7325:555..1614+ (Himanthalia elongata Himel1 dioecious)
GTGGTGATAGGCTCCGACACGATCGTTGACGTGGTGATAGGCTCCGACAC
GATCGTTGACCTGGACGGCGTAATTCTGGAAAAACCAAGGGACGACGAAC
ACGCGTTTTCAATGCTGTCCAGCCTCAGCGGGCGACGGCACCTGGTCCAC
TCTGGAGTGGCGCTTTTCACGTCCAAAGGAGGGAAGGAAGAGGCAGCGGT
CAGCTTCTGCGAAACCACGGAGGTGCTGTTTGCCTCCTTGTCGCCGGAAG
AGGTTACAGCATACATCAACTGGACGGCGTAATTCTGGAAAAACCAAGGG
ACGACGAACACGCGTTTTCAATGCTGTCCAGCCTCAGCGGGCGACGGCAC
CTGGTCCACTCTGGAGTGGCGCTTTTCACGTCCAAAGGAGGGAAGGAAGA
GGCAGCGGTCAGCTTCTGCGAAACCACGGAGGTGCTGTTTGCCTCCTTGT
CGCCGGAAGAGGTTACAGCATACATCAAGACGCGAGAACCGATGGATAAA
GCTGGGGCTTACGACGCGAGAACCGATGGATAAAGCTGGGGCTTAC
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