mRNA_H-elongata_contig7320.14998.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7320.14998.1
Unique NamemRNA_H-elongata_contig7320.14998.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7320.14998.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.540e-22
Identity = 66/167 (39.52%), Postives = 88/167 (52.69%), Query Frame = 1 
Query:   16 NKDVMYQVESLDVFKGGGDDTSYIDGTMDISLTTGGNSALCGIFMDIGEEYLIDLYYNSYDD---------DQLAAVGSCGIFRSWDSITADDIELLDSGCDDYYPCGVACGEFQECKMSFDFYAGPSFDCIDTCD-PSPCAEDEVCELLSSACSDEATSCPPIVSC 486
            N+DV + V+   V+ G       +DG  +IS  TGGNSA+CG+ + IGEEYL+ LY    D           QL  VG C + R W  +  D+   L++GC +   C V+CGEFQEC +  D      + C DTCD P  CA++E C L   AC      CPP+ SC
Sbjct:   67 NEDVTFTVQVNAVYSGD------VDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLT-VGLCDLARVWSDVPDDEKADLEAGCGE---CDVSCGEFQECLLYEDGLESEYY-CADTCDDPDRCADNETCVLTEVACI--RAPCPPVASC 220
[Close]
BLAST of mRNA_H-elongata_contig7320.14998.1 vs. uniprot
Match: A0A6H5JAS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAS0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.590e-16
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:   85 IDGTMDISLTTGGNSALCGIFMDIGEEYLIDLY-YNSYDDDQLAAVGSCGIFRSWDSITADDIELLDSGCDDYYPCGVACGEFQECKMSFDFYA----------GPSFDCIDTCDPSPCAEDEVCELLSSACSDEATSCPPIVSC 486
            +D  ++I +TT  ++A CG+++ +G EYL+DLY Y      +L +VG+CG  +SW ++ AD I  L       +PC  ACGE Q+C +  D  +          G  F C DTC    C  +E C L  + C++    CPP+  C
Sbjct:   60 VDYPVEIEVTTSASAADCGVYLQVGGEYLLDLYRYKG----ELRSVGACGATQSWTTLPADRIATLGDINRACHPC-AACGESQDCLLYTDGDSTTTSSSVTGGGKEFYCADTCAAGVCGAEETCYLNEAHCTEGP--CPPVAEC 197
[Close]
BLAST of mRNA_H-elongata_contig7320.14998.1 vs. uniprot
Match: D7G2B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.340e-16
Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 1 
Query:   85 IDGTMDISLTTGGNSALCGIFMDIGEEYLIDLY-YNSYDDDQLAAVGSCGIFRSWDSITADDIELL---DSGCDDYYPCGVACGEFQECKMSFDFYA----------GPSFDCIDTCDPSPCAEDEVCELLSSACSDEATSCPPIVSC 486
            +D  ++I +TT  ++A CG+++ +G EYL+DLY Y      +L +VG+CG  +SW ++ AD I  L   +S CD   PC  ACGE Q+C +  D  +          G  F C DTC    C  +E C L  S C+     CPP+  C
Sbjct:   48 VDYPVEIEVTTSASAAHCGVYLQVGGEYLLDLYRYKG----ELRSVGACGATQSWTTLPADRIATLGDINSACD---PC-AACGESQDCLLYTDGDSTTTXXXVTGGGEEFYCADTCAAGVCGAEETCYLNESDCTGGP--CPPVAEC 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7320.14998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCN7_ECTSI1.540e-2239.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAS0_9PHAE3.590e-1634.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2B7_ECTSI5.340e-1636.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7320contigH-elongata_contig7320:241..1146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue6e-18
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size486
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7320.14998.1prot_H-elongata_contig7320.14998.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7320 268..1146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.8990796-UTR-H-elongata_contig7320:240..2671622931133.8990796-UTR-H-elongata_contig7320:240..267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7320 241..267 +
1691679712.1611228-UTR-H-elongata_contig7320:240..2671691679712.1611228-UTR-H-elongata_contig7320:240..267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7320 241..267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.9221785-CDS-H-elongata_contig7320:267..5731622931133.9221785-CDS-H-elongata_contig7320:267..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7320 268..573 +
1691679712.173779-CDS-H-elongata_contig7320:267..5731691679712.173779-CDS-H-elongata_contig7320:267..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7320 268..573 +
1622931133.944572-CDS-H-elongata_contig7320:993..11461622931133.944572-CDS-H-elongata_contig7320:993..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7320 994..1146 +
1691679712.1821294-CDS-H-elongata_contig7320:993..11461691679712.1821294-CDS-H-elongata_contig7320:993..1146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7320 994..1146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7320.14998.1

>prot_H-elongata_contig7320.14998.1 ID=prot_H-elongata_contig7320.14998.1|Name=mRNA_H-elongata_contig7320.14998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MYQVESLDVFKGGGDDTSYIDGTMDISLTTGGNSALCGIFMDIGEEYLID
LYYNSYDDDQLAAVGSCGIFRSWDSITADDIELLDSGCDDYYPCGVACGE
FQECKMSFDFYAGPSFDCIDTCDPSPCAEDEVCELLSSACSDEATSCPPI
VSC
back to top

mRNA from alignment at H-elongata_contig7320:241..1146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7320.14998.1 ID=mRNA_H-elongata_contig7320.14998.1|Name=mRNA_H-elongata_contig7320.14998.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at H-elongata_contig7320:241..1146+ (Himanthalia elongata Himel1 dioecious)
GAGGGAGCGAGTAGCAACAAAGACGTTATGTACCAGGTCGAAAGCCTCGA
TGTTTTTAAGGGGGGGGGAGACGACACAAGTTATATCGACGGCACGATGG
ACATCAGCCTCACGACCGGCGGCAACAGCGCCCTCTGCGGGATATTTATG
GATATCGGCGAGGAGTACCTCATCGACCTTTACTACAATTCCTACGACGA
CGACCAACTAGCAGCAGTAGGCTCGTGTGGCATTTTTAGGTCTTGGGACT
CGATCACCGCCGACGACATTGAGCTCCTTGATTCGGGGTGCGACGATTAT
TACCCGTGCGGCGTTGCCTGCGGCGAATTCCAGGTGCTTGCGCTTGGTTG
GTGGAGAGCAAAGCGAGTATGACGCCAAGACGGGTGGGCTGAAAAATCCC
ATATATTATGCCTAAGTTTACTGTTCGGCCATATTTCTAAAATGTACTTA
TGTTAGAGGCTCTGTTTTACTCGATGAGCGTCTACATTCCCAAATAATCG
ATGGTGATAATTCGCACGCCGGTACGATGAAGCAGCATATTTACGAGTTC
AGTAAAACCCAGGGTATCCACGAACAACCCGTAAATGGTCCGACGTTAAT
CGGGTGATTAGATTATGAAACTGCGGTGTCTAGGGGCGACCACCTGTACC
ACTTCTTCACAAACATAAACTTCATTACATAATTTCCCCCATGCTGCCTT
TCACCAACTTCGTCCTTTACCCGTATTGACGCGTTGATTGTGCTATCTTA
CAGGAATGCAAGATGAGCTTCGACTTCTACGCAGGACCAAGCTTCGACTG
CATCGACACATGTGATCCGAGCCCGTGCGCTGAGGACGAGGTCTGCGAGC
TTTTGTCCTCGGCATGCTCCGACGAAGCAACTTCGTGCCCACCTATCGTA
TCTTGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig7320:241..1146+

>mRNA_H-elongata_contig7320.14998.1 ID=mRNA_H-elongata_contig7320.14998.1|Name=mRNA_H-elongata_contig7320.14998.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig7320:241..1146+ (Himanthalia elongata Himel1 dioecious)
ATGTACCAGGTCGAAAGCCTCGATGTTTTTAAGGGGGGGGGAGACGACAC
AAGTTATATCGACGGCACGATGGACATCAGCCTCACGACCGGCGGCAACA
GCGCCCTCTGCGGGATATTTATGGATATCGGCGAGGAGTACCTCATCGAC
CTTTACTACAATTCCTACGACGACGACCAACTAGCAGCAGTAGGCTCGTG
TGGCATTTTTAGGTCTTGGGACTCGATCACCGCCGACGACATTGAGCTCC
TTGATTCGGGGTGCGACGATTATTACCCGTGCGGCGTTGCCTGCGGCGAA
TTCCAGATGTACCAGGTCGAAAGCCTCGATGTTTTTAAGGGGGGGGGAGA
CGACACAAGTTATATCGACGGCACGATGGACATCAGCCTCACGACCGGCG
GCAACAGCGCCCTCTGCGGGATATTTATGGATATCGGCGAGGAGTACCTC
ATCGACCTTTACTACAATTCCTACGACGACGACCAACTAGCAGCAGTAGG
CTCGTGTGGCATTTTTAGGTCTTGGGACTCGATCACCGCCGACGACATTG
AGCTCCTTGATTCGGGGTGCGACGATTATTACCCGTGCGGCGTTGCCTGC
GGCGAATTCCAGGAATGCAAGATGAGCTTCGACTTCTACGCAGGACCAAG
CTTCGACTGCATCGACACATGTGATCCGAGCCCGTGCGCTGAGGACGAGG
TCTGCGAGCTTTTGTCCTCGGCATGCTCCGACGAAGCAACTTCGTGCCCA
CCTATCGTATCTTGTGAATGCAAGATGAGCTTCGACTTCTACGCAGGACC
AAGCTTCGACTGCATCGACACATGTGATCCGAGCCCGTGCGCTGAGGACG
AGGTCTGCGAGCTTTTGTCCTCGGCATGCTCCGACGAAGCAACTTCGTGC
CCACCTATCGTATCTTGT
back to top